BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481573
Length=951
Score E
Sequences producing significant alignments: (Bits) Value
AT2G38790.1 | Symbols: | unknown protein; Has 21 Blast hits to... 774 0.0
> AT2G38790.1 | Symbols: | unknown protein; Has 21 Blast hits
to 21 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes
- 2 (source: NCBI BLink). | chr2:16214189-16215264 REVERSE
LENGTH=1076
Length=1076
Score = 774 bits (419), Expect = 0.0
Identities = 557/619 (90%), Gaps = 27/619 (4%)
Strand=Plus/Plus
Query 348 TAAAGATGAGTTTCTTGGTTTCTTCAGCAATATCGGAGACGCTGTGTCCC-AATTCAAAC 406
|||||| ||||||||||||||||||| ||| ||||||||||||||||||| |||| ||||
Sbjct 449 TAAAGACGAGTTTCTTGGTTTCTTCAACAAAATCGGAGACGCTGTGTCCCAAATT-AAAC 507
Query 407 AAGATTCTCGTTCTCCTACAAAGTCAATGACTATGCAGAGGAGTCTCAGTGCTGGTTCGT 466
||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 508 AAGATTCTCGTCCTCCTACAAAGTCAATGACTATGCGGAGGAGTCTCAGTGCTGGTTCGC 567
Query 467 CACGTGTCACCTCGAAAGGGGTTAAATTGGGTCCATCAGATCTAAGAGATGAAAGGTTTA 526
||||| |||| |||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 568 CACGTTTCACTTCGAAAGGGGTTAATTTGGGTCCATCAGATCTAAGACATGAAAGGTTTA 627
Query 527 AAGTTACAACGGTTAATGCTGGT-G-G-TGCT-G--C--C-GGAGGAGGTAAAGGTGGGT 577
||||||||| ||||||||||||| | | |||| | | | ||||||||||||||||| |
Sbjct 628 AAGTTACAATGGTTAATGCTGGTGGAGCTGCTGGTTCTGCGGGAGGAGGTAAAGGTGGCT 687
Query 578 CGGCGGCTGGTCAGGGCCAGACCAAGAAGCAGTCAGGATTTGTGACATGTGGTGGTGTGG 637
|||| ||||||||||| |||||||||||| ||||| ||||||||||| | |||||||||
Sbjct 688 CGGCAGCTGGTCAGGGTCAGACCAAGAAGTAGTCAAGATTTGTGACA--T-GTGGTGTGG 744
Query 638 CCATGGATGATCAAATCTTATGAAACAGTCACTCAGGGTTTATCATTACACAGGACATTA 697
|||||||||||||||||||||| || || ||||||||||| |||| |||| | | |||
Sbjct 745 CCATGGATGATCAAATCTTATG--AC--TC-CTCAGGGTTTAGCATTGCACAAGCCGTTA 799
Query 698 CTATTTGCTAAATGGAATGAAATGTGAAAAGTGTGGTTAAGTCTTTTGAGTCAACTTGGG 757
|||||||||| | ||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 800 CTATTTGCTACACGGAATGAAATGTGTAAAGTGTGGTTAAGACTTTTGAGTCAACTTGGG 859
Query 758 GATTCCTAGTTCTAAAGGTGGATTTCAATTTCTTTATTC--T--TTTCCTAGTTGGGTTT 813
|||||| |||| ||||| ||||||||||||||||||||| | ||||||||| ||||||
Sbjct 860 GATTCCAAGTTTTAAAGATGGATTTCAATTTCTTTATTCAATCATTTCCTAGTGGGGTTT 919
Query 814 GTTTTATGTTTTAGTATTTATAGAGATGAAGTATCAGACTCAACCAAAGGTAGAAGAAAC 873
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 920 GTTTTATGTTTTAGTATCTATAGAGATGAAGTATCAGACTCATCCAAAGGTAGAAGAAAC 979
Query 874 TAGGATCAACAAGAGCTTTGTTTATATATTCTCTTTGGTGATTGATTCTAAT-ATTCTGT 932
|||||||||| || |||||||||| |||||||||||||| |||||||| | |||||||
Sbjct 980 TAGGATCAACTAG--CTTTGTTTATTTATTCTCTTTGGTGTTTGATTCTC-TGATTCTGT 1036
Query 933 TATGTTCTTTCAATTAATA 951
|||||||||||||||||||
Sbjct 1037 TATGTTCTTTCAATTAATA 1055
Score = 183 bits (99), Expect = 2e-45
Identities = 164/192 (85%), Gaps = 18/192 (9%)
Strand=Plus/Plus
Query 26 CTGCTCAAAAGTTTTGGCCAACTTCTTTCTTTCTGTGGTGGTGATTGTGAATAATAATGT 85
||||||||||| ||||||||||||||||||| |||| | ||||||||||| ||| ||||
Sbjct 53 CTGCTCAAAAGATTTGGCCAACTTCTTTCTTGCTGT--T-GTGATTGTGAA-AATTATGT 108
Query 86 CTATGGGGAAGAAACATCTTAACATCAATTCTCTGAATTACCAAAATCCACAAAGGGTGA 145
||||||||||||||||||||||||||||||||| |||| ||||| |||||||||| |
Sbjct 109 CTATGGGGAAGAAACATCTTAACATCAATTCTCAGAATCACCAA--TCCACAAAGG---A 163
Query 146 AGAAAACGAAAAAGACAACAACCGCAAGAACAGTCTCTTCTTTGGATTATTTGATGACCC 205
|||| |||||||| ||||||||||||||||||||||||| ||||| |||||
Sbjct 164 ------CGAA---GACAACAATTGCAAGAACAGTCTCTTCTTTGGATTGTTTGACGACCC 214
Query 206 TGAATCTACAAG 217
|||||||| |||
Sbjct 215 TGAATCTAAAAG 226
Score = 154 bits (83), Expect = 2e-36
Identities = 104/113 (92%), Gaps = 6/113 (5%)
Strand=Plus/Plus
Query 216 AGATAGCTACCACAGAGTTTATGACGAACAAAatgatgatgttggttatgatggtgatgg 275
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 269 AGATAGCTACCACAGAGTTTATGACGAACAAAATGATGATGTTGAATATGATGGTGATGG 328
Query 276 cgatg---atga---tgagggatcaaggatggacatgaGAGTACTGATGGTAT 322
|||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 329 TGATGGTGATGAGGATGAGGGATCAAGGATGGACATGAGAGTACTGATGGTAT 381
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46516820122
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5