BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481576
Length=1607
Score E
Sequences producing significant alignments: (Bits) Value
AT2G26980.4 | Symbols: CIPK3 | CBL-interacting protein kinase 3... 2252 0.0
> AT2G26980.4 | Symbols: CIPK3 | CBL-interacting protein kinase
3 | chr2:11514703-11518505 REVERSE LENGTH=1966
Length=1966
Score = 2252 bits (1219), Expect = 0.0
Identities = 1456/1563 (93%), Gaps = 46/1563 (3%)
Strand=Plus/Plus
Query 87 TTAAG-G-AATGAATCGGAGGCAGCAAGTGAAACGTAGAGTAGGTAAATATGAAGTTGGA 144
||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 101 TTAAGAGAAATGAATCGGAGACAGCAAGTGAAACGTAGAGTAGGTAAATATGAAGTTGGA 160
Query 145 AGAACAATTGGAGAAGGAACTTTTGCTAAAGTTAAGTTTGCTAGAAACTCTGAAACCGGA 204
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 161 AGAACAATTGGAGAAGGAACGTTTGCTAAAGTTAAGTTTGCTAGAAACTCTGAAACTGGA 220
Query 205 GAACCTGTTGCTCTCAAGATTCTTGATAAAGAGAAAGTTCTCAAGCATAAAATGGCTGAA 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 221 GAACCTGTTGCTCTCAAGATTCTTGATAAAGAGAAAGTTCTCAAGCATAAAATGGCTGAA 280
Query 265 CAGATCAGAAGAGAGATAGCTACTATGAAGTTGATTAAGCATCCCAATGTTGTTCAATTA 324
||||| ||||||||||||||||||||||||||||| || ||||| |||||||||||||||
Sbjct 281 CAGATTAGAAGAGAGATAGCTACTATGAAGTTGATAAAACATCCAAATGTTGTTCAATTA 340
Query 325 TATGAGGTGATGGCAAGTAAGACGAAGATATTTATCATCTTGGAGTATGTTACAGGAGGA 384
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 341 TATGAGGTGATGGCAAGTAAGACGAAAATATTTATCATCTTGGAGTATGTTACAGGAGGA 400
Query 385 GAACTCTTTGATAAGATTGTAAATGACGGGCGGATGAAAGAAAACGAGGCGCGGAGATAT 444
|||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||
Sbjct 401 GAACTCTTTGATAAGATTGTAAATGATGGGCGGATGAAAGAAGATGAGGCGCGGAGATAT 460
Query 445 TTCCAACAGCTTATACATGCTGTGGACTACTGTCATAGCAGAGGTGTCTACCATAGAGAC 504
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 461 TTCCAACAGCTTATACATGCTGTGGACTACTGTCATAGCAGAGGGGTCTACCATAGAGAC 520
Query 505 CTTAAGCCTGAAAATTTACTATTGGA-TGCCTATGGAAACCTCAAGATCTCAGATTTTGG 563
|| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 521 CTCAAGCCTGAAAATTTACTATTGGACT-CCTATGGAAACCTCAAGATCTCAGATTTTGG 579
Query 564 ATTAAGTGCTTTGTCCCAACAAGTCAGGGATGATGGACTCCTT-CATACATCGTGTGGAA 622
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 580 ATTAAGTGCTTTGTCCCAACAAGTCAGGGATGATGGACT-CTTGCATACATCGTGTGGAA 638
Query 623 CTCCAAACTACGTTGCTCCTGAGGTCCTCAATGATAGAGGCTATGATGGAGCAACAGCGG 682
| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 639 CACCAAACTACGTTGCTCCTGAGGTTCTCAATGATAGAGGCTATGATGGAGCAACAGCTG 698
Query 683 ACATGTGGTCATGCGGTGTTATACTCTATGTCCTGCTTGCAGGTTACTTACCTTTTGATG 742
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 699 ACATGTGGTCATGCGGTGTTGTACTCTATGTCCTGCTTGCAGGTTACTTACCTTTTGATG 758
Query 743 ATTCTAATCTAATGAATCTTTATaaaaaaaTTTCATCTGGTGAATTCAATTGTCCTCCAT 802
||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
Sbjct 759 ATTCTAATCTAATGAATCTTTATAAAAAAATATCATCTGGTGAATTCAACTGTCCTCCGT 818
Query 803 GGCTCTCACTCGGCGCCATGAAACTCATCACTCGAATCTTAGATCCAAACCCAATGACCC 862
||||||||||||| |||||||||||||||||| ||||||||||||| || || ||||| |
Sbjct 819 GGCTCTCACTCGGTGCCATGAAACTCATCACTAGAATCTTAGATCCGAATCCGATGACTC 878
Query 863 GTGTAACACCGCAAGAGGTCTTCGAAGATGAATGGTTCAAGAAAGATTACAAGCCTCCAG 922
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
Sbjct 879 GTGTAACACCGCAAGAGGTTTTCGAAGATGAATGGTTCAAGAAAGATTACAAGCCACCTG 938
Query 923 TTTTCGAGGAGAAAGATTG-TTCAAACATGGATGATATTGATGCTGTTTTCAAGGACTCT 981
|||||||||||| || || |||||||||||| |||||||||||||||||||||||||||
Sbjct 939 TTTTCGAGGAGAGGGA-TGATTCAAACATGGACGATATTGATGCTGTTTTCAAGGACTCT 997
Query 982 GAGGAACATCTTGTTACTGAGAAGAAAGAAGAACAGCCAGCGGCAATCAACGCTTTTGAG 1041
||||||||||||||||||||||||| |||||||||||||||||| ||||| || || |||
Sbjct 998 GAGGAACATCTTGTTACTGAGAAGAGAGAAGAACAGCCAGCGGCGATCAATGCCTTCGAG 1057
Query 1042 ATCATCTCAATGTCAAGAGGG-CTTAACCTAGAGAATCTGTTTGATCCAGAACAGGAATT 1100
||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1058 ATCATTTCAATGTCAAG-GGGACTTAACCTAGAGAATCTGTTTGATCCAGAACAGGAATT 1116
Query 1101 TAAGAGGGAAACAAGGATAACACTAAGAGGAGGCGCGAATGAGATCATCGAGAAGATAGA 1160
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 1117 TAAGAGGGAAACAAGGATAACATTGAGAGGAGGCGCGAATGAGATCATCGAGAAGATAGA 1176
Query 1161 AGAAACTGCAAAGCCTCTCGGTTTTGATGTGCAAAAGAAGAACTACAAGATGAGGCTTGA 1220
|||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1177 AGAAGCTGCAAAGCCTCTCGGTTTCGATGTTCAAAAGAAGAACTACAAGATGAGGCTTGA 1236
Query 1221 GAATGTGAAGGCCGGGAGAAAAGGGAATCTCAATGTAGCGACGGAGATATTCCAAGTAGC 1280
|||||||||||| || ||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1237 GAATGTGAAGGCTGGAAGAAAGGGGAATCTCAATGTAGCGACAGAGATATTCCAAGTAGC 1296
Query 1281 ACCAAGTCTTCATATGGTTCAAGTATCGAAGTCGAAAGGAGATACCCTCGAATTCCACAA 1340
||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||
Sbjct 1297 GCCAAGTCTTCATATGGTTCAAGTATCGAAGTCGAAAGGAGACACTCTCGAATTTCACAA 1356
Query 1341 GTTCTATAAGAAGCTCTCTAATTCTCTGGAGCAAGTAGTCTGGACGAACAACGAAGTTAA 1400
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1357 GTTCTATAAGAAGCTCTCTAATTCTCTGGAGCAAGTAGTCTGGACGAATAACGAAGTTAA 1416
Query 1401 GAAAGAAACAGGAAAGTGATGTATGAGAG-----TTTT------A----T-C--T-TTTG 1441
||||||||||| ||||||||||||||||| |||| | | | | ||||
Sbjct 1417 GAAAGAAACAGCAAAGTGATGTATGAGAGTTTTCTTTTGGGACAATTCTTGCTTTCTTTG 1476
Query 1442 -G----A-A-C-TTTTTGCTTGACCGGCTACTTTGTGTGAATGATGAGAAAGGGAGTGGG 1493
| | | | ||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1477 TGTATAAGAGCTTTTTTGCTTTACCGGCTACTTTGTGTGGATGATGAGAAAGGGAGTGGG 1536
Query 1494 ATTGGTTT-GTGTAAAAGAAAGGTGTAAATATGAACCGCATTA---G----G-TGCTGCG 1544
|||||||| ||||||||||||||||||||||||||| |||||| | | |||||||
Sbjct 1537 ATTGGTTTTGTGTAAAAGAAAGGTGTAAATATGAACTGCATTACTCGATAAGGTGCTGCG 1596
Query 1545 ATACCAGTTATAAAGTCATATCAAAGCTTGTTGGCTATGCGTTTGAAAATGCCTCCTTGC 1604
|| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 1597 ATGCCAGTTATAAAGTCATATCAAAGCTTGTTGGCTAAAAGTTTGAAAATGCCTCATTGC 1656
Query 1605 TCT 1607
|||
Sbjct 1657 TCT 1659
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79367061645
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5