BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481579
Length=1595
Score E
Sequences producing significant alignments: (Bits) Value
AT2G26990.1 | Symbols: FUS12, ATCSN2, COP12, CSN2 | proteasome ... 2514 0.0
> AT2G26990.1 | Symbols: FUS12, ATCSN2, COP12, CSN2 | proteasome
family protein | chr2:11519507-11522587 REVERSE LENGTH=1672
Length=1672
Score = 2514 bits (1361), Expect = 0.0
Identities = 1529/1609 (95%), Gaps = 16/1609 (1%)
Strand=Plus/Plus
Query 1 TCTTCTTCTTCTACTTCCGCAAAAACCCTTTGCATAAAAAGAAGCAAAATTCTCTCATCG 60
|||||||||||||||||||||||||||||||| | ||| |||||||||||||||| ||||
Sbjct 62 TCTTCTTCTTCTACTTCCGCAAAAACCCTTTG-AGAAAGAGAAGCAAAATTCTCTAATCG 120
Query 61 TTCTTACTTTGCCCTAATTCACGAATCGTTTGTTCTTCTTCTTCCTCTG-ATCGTCATGG 119
||||| || ||||||||| |||| |||||||| | ||||||||| || | |||| |||||
Sbjct 121 TTCTTTCTCTGCCCTAATCCACGTATCGTTTGGTGTTCTTCTTCATC-GAATCGACATGG 179
Query 120 CTTCAGATGCTGATATGGAGGACTATGGATTCGAGTATTCTGATGAGGACCAAGAGGAAC 179
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 180 CTTCAGATGCTGACATGGAGGACTATGGATTCGAGTATTCTGATGAGGAGCAAGAGGAAC 239
Query 180 AAGATGTTGACATTGAGAACCAGTATTATAACTCTAAAGGTATGGTTGAGACTGAACCTG 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 AAGATGTTGACATTGAGAACCAGTATTATAACTCTAAAGGTATGGTTGAGACTGAACCTG 299
Query 240 AAGAAGCACTTTCTGGGTTTGCTGAGGTTGTTCAGATGGAGCCAGACAAAGCTGACTGGG 299
|||||||||||||||| ||||||||||||||||||||||| || || |||||||||||||
Sbjct 300 AAGAAGCACTTTCTGGATTTGCTGAGGTTGTTCAGATGGAACCTGAGAAAGCTGACTGGG 359
Query 300 GTTTCAAAGCTCTTAAGCAGACTGTGAAGATCTATTATCGTCTAGGTAAATACAAAGAAA 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GTTTCAAAGCTCTTAAGCAGACTGTGAAGATCTATTATCGTCTAGGTAAATACAAAGAAA 419
Query 360 TGATGGAAGCATATAGAGAGATGCTTACATATATCAAGTCAGCAGTGACCAGGAATTACA 419
|||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 420 TGATGGAAGCCTATACAGAGATGCTTACATATATCAAGTCAGCAGTCACCAGGAATTACA 479
Query 420 GCGAAAAATGTATAAACAATATTATGGATTTCGTCTCTGGATCTGCTAGCCAGAATACTG 479
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 480 GCGAAAAATGTATAAACAATATCATGGATTTCGTCTCTGGATCTGCTAGCCAGAACACTG 539
Query 480 GCCTGCTGCAAGAGTTTTATCAGACCACTTTGAAAGCCCTTGAAGAGGCTAAGAATGAGA 539
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GCCTGCTGCAAGAGTTCTATCAGACCACTTTGAAAGCCCTTGAAGAGGCTAAGAATGAGA 599
Query 540 GACTCTGGTTCAAGACGAATCTTAAACTCTGCAACATCTGGTTTGACATTGGTGAATACA 599
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GACTCTGGTTCAAGACAAATCTTAAACTCTGCAACATCTGGTTTGACATTGGTGAATACA 659
Query 600 GACGTATGACCAAGATTCTTAAGGAACCCCATAAATCTTGTCAAAAGGAAGATGGAACTG 659
|||| ||||| |||||||| ||||||| |||||| |||||||||||||||||||||||||
Sbjct 660 GACGGATGACTAAGATTCTGAAGGAACTCCATAAGTCTTGTCAAAAGGAAGATGGAACTG 719
Query 660 ATGATCAGAAGAAAGGAAGTCAGCTGCTTGAGGTTTATGCAATTGAAATTCAGATTTACA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 ATGATCAGAAGAAAGGAAGTCAGCTGCTTGAGGTTTATGCAATTGAAATTCAGATTTACA 779
Query 720 CTGAAACGAAGGACAACAAAAAGCTTAAGCAACTATACCATAAGGCACTTTCCATCAAAT 779
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 780 CTGAAACGAAGGACAACAAAAAGCTTAAGCAACTATACCATAAGGCACTTGCCATCAAGT 839
Query 780 CTGCCATACCTCATCCTAGGATCATGGGTATAATCCGCGAGTGTGGTGGAAAAATGCACA 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 CTGCCATACCTCATCCTAGGATCATGGGTATAATCCGCGAGTGTGGTGGAAAAATGCACA 899
Query 840 TGGCAGAACGTCAGTGGGCAGAAGCAGCGACAGACTTCTTTGAGGCTTTTAAAAATTACG 899
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TGGCAGAACGTCAGTGGGAAGAAGCAGCGACAGACTTCTTTGAGGCTTTTAAAAATTACG 959
Query 900 ATGAAGCTGGCAACCAAAGACGTATACAGTGCCTGAAATATCTTGTTCTCGCGAATATGC 959
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 960 ATGAAGCTGGCAACCAAAGACGTATACAGTGCCTGAAGTATCTTGTTCTGGCGAATATGC 1019
Query 960 TGATGGAGTCGGAAGTGAATCCATTTGATGGCCAAGAGGCAAAGCCGTACAAAAACGACC 1019
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1020 TGATGGAGTCAGAAGTGAATCCGTTTGATGGCCAAGAGGCAAAGCCGTACAAAAACGACC 1079
Query 1020 CTGAGATCTTGGCAATGACAAATTTGATCGCAGCATATCAACGAAATGAGATCATAGAGT 1079
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 CTGAGATTTTGGCAATGACAAATTTGATCGCAGCATATCAACGAAATGAGATCATAGAGT 1139
Query 1080 TTGAGAGAATTCTAAAGAGTAACCGGAGGACGATAATGGATGATCCATTCATCAGAAACT 1139
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 TTGAGAGAATACTAAAGAGTAACCGGAGGACGATAATGGATGATCCATTCATCAGAAACT 1199
Query 1140 ACATGGAAGATCTGCTGAGGAAAGTGAGAACACAAGTGTTGCTGAAGCTGATAAAGCCAT 1199
|||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||
Sbjct 1200 ACATGGAAGATCTGCTGAAGAAAGTGAGAACACAAGTGTTACTGAAGCTGATTAAGCCAT 1259
Query 1200 ACACAAAGATAGGGATTCCGTTCATATCAAAGGAACTGAACGTGCCAGAGAAGGACGTGA 1259
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 1260 ACACAAAGATAGGGATTCCGTTCATATCAAAGGAACTGAACGTGCCAGAGACGGATGTGA 1319
Query 1260 CGGAGTTGCTAGTGTCACTGATACTCGACAGCCGAATCGATGGTCACATTGACGAAATGA 1319
||||||| |||||||| ||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 1320 CGGAGTTACTAGTGTCGCTGATACTCGACAGCAGAATCGATGGTCACATTGATGAAATGA 1379
Query 1320 ACCGTTACTTGCTAAGAGGTGACAGTGGCAATGGAAGGAAGCTGCATAAAGCGGTTGATA 1379
|||||||||| || ||||| ||||||||||||||||||||| ||||||| ||||||||||
Sbjct 1380 ACCGTTACTTACTGAGAGGCGACAGTGGCAATGGAAGGAAGTTGCATAAGGCGGTTGATA 1439
Query 1380 AATGGAACACACAGCTCAAGTCTCTTTCTTCAAACATCACCAGCCGAGTCTGTTAA-T-- 1436
|||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 1440 AATGGAACTCACAGCTCAAGTCTCTTTCTTCAAATATCACCAGCCGAGTCTGTTAACTTG 1499
Query 1437 ----C-T-T-TT--GGATAGATTTTGTGTTTTGGCGTTGATTCTCTGTGGATTATCTGTT 1487
| | | || |||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 1500 GAAACCTCTCTTTTGGATAGATTTTGTGATTTGGCGTTGATTCTTTGTGGATTATCTGTT 1559
Query 1488 TCTCTTCACATAGCTGGATTTGATTGAGTTGATAAACCACTTCAATGCCaaaaaaaaGGA 1547
|||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||
Sbjct 1560 TCTCTTCACATAGCTGGATTTGATGGAGTTTATAAACCACTTCAATGCCAAGAAAAAGGA 1619
Query 1548 TTTGAAAATTT-CTGAATTCTCGTTTTTAAAATTGATTTCTTTACTTTG 1595
||||||| ||| || |||||| ||||||||||||||||||| ||||||
Sbjct 1620 TTTGAAACTTTTCTTCATTCTCATTTTTAAAATTGATTTCTTAACTTTG 1668
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78764655105
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5