BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg481579 Length=1595 Score E Sequences producing significant alignments: (Bits) Value AT2G26990.1 | Symbols: FUS12, ATCSN2, COP12, CSN2 | proteasome ... 2514 0.0 > AT2G26990.1 | Symbols: FUS12, ATCSN2, COP12, CSN2 | proteasome family protein | chr2:11519507-11522587 REVERSE LENGTH=1672 Length=1672 Score = 2514 bits (1361), Expect = 0.0 Identities = 1529/1609 (95%), Gaps = 16/1609 (1%) Strand=Plus/Plus Query 1 TCTTCTTCTTCTACTTCCGCAAAAACCCTTTGCATAAAAAGAAGCAAAATTCTCTCATCG 60 |||||||||||||||||||||||||||||||| | ||| |||||||||||||||| |||| Sbjct 62 TCTTCTTCTTCTACTTCCGCAAAAACCCTTTG-AGAAAGAGAAGCAAAATTCTCTAATCG 120 Query 61 TTCTTACTTTGCCCTAATTCACGAATCGTTTGTTCTTCTTCTTCCTCTG-ATCGTCATGG 119 ||||| || ||||||||| |||| |||||||| | ||||||||| || | |||| ||||| Sbjct 121 TTCTTTCTCTGCCCTAATCCACGTATCGTTTGGTGTTCTTCTTCATC-GAATCGACATGG 179 Query 120 CTTCAGATGCTGATATGGAGGACTATGGATTCGAGTATTCTGATGAGGACCAAGAGGAAC 179 ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 180 CTTCAGATGCTGACATGGAGGACTATGGATTCGAGTATTCTGATGAGGAGCAAGAGGAAC 239 Query 180 AAGATGTTGACATTGAGAACCAGTATTATAACTCTAAAGGTATGGTTGAGACTGAACCTG 239 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 AAGATGTTGACATTGAGAACCAGTATTATAACTCTAAAGGTATGGTTGAGACTGAACCTG 299 Query 240 AAGAAGCACTTTCTGGGTTTGCTGAGGTTGTTCAGATGGAGCCAGACAAAGCTGACTGGG 299 |||||||||||||||| ||||||||||||||||||||||| || || ||||||||||||| Sbjct 300 AAGAAGCACTTTCTGGATTTGCTGAGGTTGTTCAGATGGAACCTGAGAAAGCTGACTGGG 359 Query 300 GTTTCAAAGCTCTTAAGCAGACTGTGAAGATCTATTATCGTCTAGGTAAATACAAAGAAA 359 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 GTTTCAAAGCTCTTAAGCAGACTGTGAAGATCTATTATCGTCTAGGTAAATACAAAGAAA 419 Query 360 TGATGGAAGCATATAGAGAGATGCTTACATATATCAAGTCAGCAGTGACCAGGAATTACA 419 |||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||| Sbjct 420 TGATGGAAGCCTATACAGAGATGCTTACATATATCAAGTCAGCAGTCACCAGGAATTACA 479 Query 420 GCGAAAAATGTATAAACAATATTATGGATTTCGTCTCTGGATCTGCTAGCCAGAATACTG 479 |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| Sbjct 480 GCGAAAAATGTATAAACAATATCATGGATTTCGTCTCTGGATCTGCTAGCCAGAACACTG 539 Query 480 GCCTGCTGCAAGAGTTTTATCAGACCACTTTGAAAGCCCTTGAAGAGGCTAAGAATGAGA 539 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 GCCTGCTGCAAGAGTTCTATCAGACCACTTTGAAAGCCCTTGAAGAGGCTAAGAATGAGA 599 Query 540 GACTCTGGTTCAAGACGAATCTTAAACTCTGCAACATCTGGTTTGACATTGGTGAATACA 599 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 GACTCTGGTTCAAGACAAATCTTAAACTCTGCAACATCTGGTTTGACATTGGTGAATACA 659 Query 600 GACGTATGACCAAGATTCTTAAGGAACCCCATAAATCTTGTCAAAAGGAAGATGGAACTG 659 |||| ||||| |||||||| ||||||| |||||| ||||||||||||||||||||||||| Sbjct 660 GACGGATGACTAAGATTCTGAAGGAACTCCATAAGTCTTGTCAAAAGGAAGATGGAACTG 719 Query 660 ATGATCAGAAGAAAGGAAGTCAGCTGCTTGAGGTTTATGCAATTGAAATTCAGATTTACA 719 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 720 ATGATCAGAAGAAAGGAAGTCAGCTGCTTGAGGTTTATGCAATTGAAATTCAGATTTACA 779 Query 720 CTGAAACGAAGGACAACAAAAAGCTTAAGCAACTATACCATAAGGCACTTTCCATCAAAT 779 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | Sbjct 780 CTGAAACGAAGGACAACAAAAAGCTTAAGCAACTATACCATAAGGCACTTGCCATCAAGT 839 Query 780 CTGCCATACCTCATCCTAGGATCATGGGTATAATCCGCGAGTGTGGTGGAAAAATGCACA 839 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 840 CTGCCATACCTCATCCTAGGATCATGGGTATAATCCGCGAGTGTGGTGGAAAAATGCACA 899 Query 840 TGGCAGAACGTCAGTGGGCAGAAGCAGCGACAGACTTCTTTGAGGCTTTTAAAAATTACG 899 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 900 TGGCAGAACGTCAGTGGGAAGAAGCAGCGACAGACTTCTTTGAGGCTTTTAAAAATTACG 959 Query 900 ATGAAGCTGGCAACCAAAGACGTATACAGTGCCTGAAATATCTTGTTCTCGCGAATATGC 959 ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct 960 ATGAAGCTGGCAACCAAAGACGTATACAGTGCCTGAAGTATCTTGTTCTGGCGAATATGC 1019 Query 960 TGATGGAGTCGGAAGTGAATCCATTTGATGGCCAAGAGGCAAAGCCGTACAAAAACGACC 1019 |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1020 TGATGGAGTCAGAAGTGAATCCGTTTGATGGCCAAGAGGCAAAGCCGTACAAAAACGACC 1079 Query 1020 CTGAGATCTTGGCAATGACAAATTTGATCGCAGCATATCAACGAAATGAGATCATAGAGT 1079 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1080 CTGAGATTTTGGCAATGACAAATTTGATCGCAGCATATCAACGAAATGAGATCATAGAGT 1139 Query 1080 TTGAGAGAATTCTAAAGAGTAACCGGAGGACGATAATGGATGATCCATTCATCAGAAACT 1139 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1140 TTGAGAGAATACTAAAGAGTAACCGGAGGACGATAATGGATGATCCATTCATCAGAAACT 1199 Query 1140 ACATGGAAGATCTGCTGAGGAAAGTGAGAACACAAGTGTTGCTGAAGCTGATAAAGCCAT 1199 |||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||| Sbjct 1200 ACATGGAAGATCTGCTGAAGAAAGTGAGAACACAAGTGTTACTGAAGCTGATTAAGCCAT 1259 Query 1200 ACACAAAGATAGGGATTCCGTTCATATCAAAGGAACTGAACGTGCCAGAGAAGGACGTGA 1259 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| Sbjct 1260 ACACAAAGATAGGGATTCCGTTCATATCAAAGGAACTGAACGTGCCAGAGACGGATGTGA 1319 Query 1260 CGGAGTTGCTAGTGTCACTGATACTCGACAGCCGAATCGATGGTCACATTGACGAAATGA 1319 ||||||| |||||||| ||||||||||||||| ||||||||||||||||||| ||||||| Sbjct 1320 CGGAGTTACTAGTGTCGCTGATACTCGACAGCAGAATCGATGGTCACATTGATGAAATGA 1379 Query 1320 ACCGTTACTTGCTAAGAGGTGACAGTGGCAATGGAAGGAAGCTGCATAAAGCGGTTGATA 1379 |||||||||| || ||||| ||||||||||||||||||||| ||||||| |||||||||| Sbjct 1380 ACCGTTACTTACTGAGAGGCGACAGTGGCAATGGAAGGAAGTTGCATAAGGCGGTTGATA 1439 Query 1380 AATGGAACACACAGCTCAAGTCTCTTTCTTCAAACATCACCAGCCGAGTCTGTTAA-T-- 1436 |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| | Sbjct 1440 AATGGAACTCACAGCTCAAGTCTCTTTCTTCAAATATCACCAGCCGAGTCTGTTAACTTG 1499 Query 1437 ----C-T-T-TT--GGATAGATTTTGTGTTTTGGCGTTGATTCTCTGTGGATTATCTGTT 1487 | | | || |||||||||||||| ||||||||||||||| ||||||||||||||| Sbjct 1500 GAAACCTCTCTTTTGGATAGATTTTGTGATTTGGCGTTGATTCTTTGTGGATTATCTGTT 1559 Query 1488 TCTCTTCACATAGCTGGATTTGATTGAGTTGATAAACCACTTCAATGCCaaaaaaaaGGA 1547 |||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||| Sbjct 1560 TCTCTTCACATAGCTGGATTTGATGGAGTTTATAAACCACTTCAATGCCAAGAAAAAGGA 1619 Query 1548 TTTGAAAATTT-CTGAATTCTCGTTTTTAAAATTGATTTCTTTACTTTG 1595 ||||||| ||| || |||||| ||||||||||||||||||| |||||| Sbjct 1620 TTTGAAACTTTTCTTCATTCTCATTTTTAAAATTGATTTCTTAACTTTG 1668 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 78764655105 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5