BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481580
Length=1017
Score E
Sequences producing significant alignments: (Bits) Value
AT2G27020.1 | Symbols: PAG1 | 20S proteasome alpha subunit G1 |... 1659 0.0
> AT2G27020.1 | Symbols: PAG1 | 20S proteasome alpha subunit G1
| chr2:11528348-11530976 REVERSE LENGTH=1035
Length=1035
Score = 1659 bits (898), Expect = 0.0
Identities = 979/1018 (96%), Gaps = 6/1018 (1%)
Strand=Plus/Plus
Query 1 TCTGGCTTGAGAACAAAGAAAACCCCTTTCTTCGATCTCTGCTTAAATCACTCGAAGAAG 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 17 TCTGGCTTGAGAACAAAGAAAACCCCTTTCTTCGATCTCAGCTTAAATCACTCGACGAAG 76
Query 61 AAGAAATCA-CTAAGAGTCACaaaaaaaaaaaGATCGACGAAGATGAGTAGCATTGGAAC 119
||||||||| |||||||| | ||||||||| ||| | |||||||||||||||||||||
Sbjct 77 AAGAAATCAGAAAAGAGTCAGAGAAAAAAAAA-ATCAAGGAAGATGAGTAGCATTGGAAC 135
Query 120 TGGGTACGATCTCTCCGTCACCACTTTCTCTCCCGATGGCCGTGTTTTCCAGATCGAGTA 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 136 TGGGTACGATCTCTCCGTCACCACTTTCTCTCCCGATGGCCGTGTTTTCCAGATCGAGTA 195
Query 180 CGCCGCTAAAGCTGTCGACAACAGTGGGACTGTTGTTGGAATCAAGTGCAAAGACGGGAT 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 196 CGCCGCTAAAGCTGTCGACAACAGTGGGACTGTTGTTGGAATCAAGTGCAAAGATGGGAT 255
Query 240 TGTTATGGGAGTGGAGAAACTTATTGCATCAAAGATGATGTTACCAGGTTCCAACCGGAG 299
|||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 256 TGTTATGGGAGTTGAGAAACTTATTGCATCAAAGATGATGCTACCAGGTTCCAACAGGAG 315
Query 300 GATCCATTCTGTTCATCGTCATGCTGGCATGGCTGTTGCTGGGCTTGCAGCTGATGGGAG 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 316 AATCCATTCTGTTCATCGTCATGCTGGCATGGCTGTTGCTGGGCTTGCAGCTGATGGGAG 375
Query 360 GCAAATTGTTGCGCGTGCTAAGTCTGAAGCACGAAGCTATGAGAGTGTTTATGGCGATGC 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 376 GCAAATTGTTGCGCGTGCTAAGTCTGAAGCACGAAGCTATGAGAGTGTTTATGGCGATGC 435
Query 420 TGTACCTGTGAAGGAACTTTCTGAGCGTGTTGCAAGTTATGTACATTTATGTACCCTGTA 479
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 436 TGTACCTGTGAAGGAACTTTCTGAGCGTGTTGCAAGTTATGTACATCTGTGTACCCTGTA 495
Query 480 TTGGTGGCTCAGGCCTTTCGGCTGTGGAGTCATTCTTGGAGGTTATGATAGAGATGGACC 539
|||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||
Sbjct 496 TTGGTGGCTCAGGCCTTTTGGCTGTGGGGTTATTCTTGGAGGTTATGATAGAGATGGACC 555
Query 540 TCAATTGTACATGATTGAACCATCAGGCATATCATATAGATATTTTGGTGCGGCCATTGG 599
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 556 TCAATTGTACATGATTGAACCATCAGGCATATCATATAGATACTTTGGTGCGGCCATTGG 615
Query 600 CAAAGGAAAGCAAGCGGCTAAAACGGAAATTGAGAAATTGAATTTATCTGAGATGACATG 659
||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||
Sbjct 616 CAAAGGAAAGCAAGCTGCCAAAACGGAAATTGAGAAATTAAATTTATCTGAGATGACATG 675
Query 660 CAAAGAAGGCGTTATCGAGGTGGCGAAAATCATCTACAAGCTACACGATGAAGCCAAAGA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 676 CAAAGAAGGCGTTATCGAGGTGGCGAAAATCATCTACAAGCTACACGATGAAGCCAAGGA 735
Query 720 CAAGGCCTTTGAATTGGAGATGAGTTGGATATGCGAGGAGTCAAAACGAGAGCATCAGAA 779
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 736 CAAGGCTTTTGAATTGGAGATGAGCTGGATATGCGAGGAGTCAAAACGAGAGCATCAGAA 795
Query 780 GGTCCCTGATGATCTTCTGGAAGAAGCAAAGACGGCAGCTAAAACTGCGCTCGAGGAGAT 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 796 GGTCCCTGATGATCTTCTGGAAGAAGCAAAGACGGCAGCTAAAACTGCGCTCGAGGAGAT 855
Query 840 GGATGCTGACTAAAACTGAGGAGTGTGTTGAATTTAGATCTGTTTTAATGCGTCGTTTTG 899
|||||||||||||||||||||||||||||||||||||||| || ||| |||||||||| |
Sbjct 856 GGATGCTGACTAAAACTGAGGAGTGTGTTGAATTTAGATCCGTCTTATTGCGTCGTTT-G 914
Query 900 -TGTTTCTTATGTACTCTGAATTGAATTTTGTCTTGGAGGGACAGTTGTTGCAGTGTCTT 958
||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 915 ATGTTTCTTATGTACTCTGAATTGAATTTTGTCT-GGAGGGACAGTTGTTGCAGTTTCGC 973
Query 959 ATGAACCATTGGAGTCTTTTATCTTTATTGCTATCAACAGTTGCTACGATAATTCCTT 1016
||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||
Sbjct 974 ATGAACCATTGGAGTCTTTTATCTT-ATTGCTATCAACAGTTGCTACGATGACTCCTT 1030
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49832273824
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5