BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481582
Length=714
Score E
Sequences producing significant alignments: (Bits) Value
AT2G27030.3 | Symbols: CAM5 | calmodulin 5 | chr2:11532004-1153... 1038 0.0
AT3G56800.1 | Symbols: CAM3, acam-3 | calmodulin 3 | chr3:21034... 470 1e-131
AT3G43810.1 | Symbols: CAM7 | calmodulin 7 | chr3:15664371-1566... 459 2e-128
> AT2G27030.3 | Symbols: CAM5 | calmodulin 5 | chr2:11532004-11534333
FORWARD LENGTH=768
Length=768
Score = 1038 bits (562), Expect = 0.0
Identities = 645/683 (94%), Gaps = 14/683 (2%)
Strand=Plus/Plus
Query 1 TTACACACACCAACGTTGATTCTTCCTC-TC-TC-T-TTCTCATCTTTCTCAAAAAC-AA 55
||||||||||||||||||||||||| || || || | ||||| |||||||| | | ||
Sbjct 2 TTACACACACCAACGTTGATTCTTCTTCTTCTTCTTCTTCTC-TCTTTCTC---ATCTAA 57
Query 56 AGCCCAAAAAATGGCAGATCAGCTCACCGATGATCAGATCTCTGAGTTCAAAGAAGCTTT 115
| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 58 A--CCAAAAAATGGCAGATCAGCTCACCGATGATCAGATCTCTGAGTTCAAGGAAGCTTT 115
Query 116 TAGCCTATTCGACAAAGACGGAGATGGTTGCATCACGACGAAAGAGCTAGGAACAGTGAT 175
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 116 TAGCCTTTTCGACAAAGACGGAGATGGTTGCATCACAACGAAAGAGCTAGGAACAGTGAT 175
Query 176 GAGATCATTAGGTCAAAATCCAACAGAAGCAGAGTTACAAGATATGATAAACGAAGTAGA 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 176 GAGATCATTAGGTCAAAATCCAACAGAAGCAGAGTTACAAGATATGATAAACGAAGTAGA 235
Query 236 TGCTGATGGTAACGGAACCATAGACTTCCCTGAGTTTCTCAACCTTATGGCTCGGAAGAT 295
||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||
Sbjct 236 TGCTGATGGTAACGGAACCATAGACTTCCCTGAGTTTCTGAACCTAATGGCTAGGAAGAT 295
Query 296 GAAAGACACTGACTCTGAAGAAGAGCTCAAAGAAGCTTTCAGGGTTTTCGATAAGGACCA 355
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 GAAGGACACTGACTCTGAAGAAGAGCTCAAAGAAGCTTTCAGGGTTTTCGATAAGGACCA 355
Query 356 GAACGGTTTCATCTCGGCCGCGGAGTTAAGACATGTTATGACTAATCTTGGTGAGAAGTT 415
|||||||||||||||||| || |||||||||||||| ||||| |||||||||||||||||
Sbjct 356 GAACGGTTTCATCTCGGCAGCTGAGTTAAGACATGTAATGACAAATCTTGGTGAGAAGTT 415
Query 416 AACTGATGAAGAAGTTGATGAGATGATCAAAGAAGCTGATGTTGATGGAGATGGTCAGAT 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 AACTGATGAAGAAGTTGATGAGATGATCAAAGAAGCTGATGTTGATGGAGATGGTCAGAT 475
Query 476 CAATTATGAAGAGTTTGTCAAAGTTATGATGGCAAAGAGAAGAGGGAAGAGGGTTATGAC 535
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 476 CAATTATGAAGAGTTTGTCAAAGTTATGATGGCAAAGAGAAGAGGGAAGAGAGTTATGGC 535
Query 536 AACTAAGCGTAGTAGCAATTCTACTGAATACAAAGACAAGAATGGTCGCCGGAAAAGCCA 595
| | |||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||
Sbjct 536 AGCAAAGCGTAGTAGCAATTCTGCTGAATACAAAGAAAAGAATGGTCGCCGGAAAAGTCA 595
Query 596 CTGCCGTATTCTCTGAGCTCCGACCATTTTCTTCTTAATTCCTTTACTTTATATGCTTGT 655
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||
Sbjct 596 CTGCCGTATTCTCTGAGCTCCGACCATTTGCTTCTTAATTCCTTTTCTTTATATGTTTGT 655
Query 656 GTGTAATAATAAGAGATTTGTAC 678
||| ||||| |||||||||||
Sbjct 656 GTGCAATAA---GAGATTTGTAC 675
> AT3G56800.1 | Symbols: CAM3, acam-3 | calmodulin 3 | chr3:21034537-21036077
REVERSE LENGTH=1051
Length=1051
Score = 470 bits (254), Expect = 1e-131
Identities = 391/457 (86%), Gaps = 9/457 (2%)
Strand=Plus/Plus
Query 61 AAAA-AATGGCAGATCAGCTCACCGATGATCAGATCTCTGAGTTCAAAGAAGCTTTTAGC 119
|||| |||||| |||||||||||||| ||||||||||||||||| || |||||||| |||
Sbjct 152 AAAACAATGGCGGATCAGCTCACCGACGATCAGATCTCTGAGTTTAAGGAAGCTTTCAGC 211
Query 120 CTATTCGACAAAGACGGAGATGGTTGCATCACGACGAAAGAGCTAGGAACAGTGATGAGA 179
|||||||||| || || ||||||||||| || || || ||||| || || |||||| |
Sbjct 212 TTATTCGACAAGGATGGTGATGGTTGCATTACCACCAAGGAGCTGGGTACTGTGATGCGT 271
Query 180 T-CATTAGGTCAAAATCCAACAGAAGCAGAG-TTACAAGATATGATAAACGAAGTAGATG 237
| | || || ||||| ||||| ||||||||| || ||||| ||||| |||||||| ||||
Sbjct 272 TCCCTT-GGACAAAACCCAACCGAAGCAGAGCTT-CAAGACATGATCAACGAAGTGGATG 329
Query 238 CTGATGGTAACGGAACCATAGACTTCCCTGAGTTTC-TCAACCTTATGGCTCGGAAGATG 296
||||||||||||| ||||| || ||||| ||| ||| | |||||||||||||| ||||||
Sbjct 330 CTGATGGTAACGGTACCATTGATTTCCCAGAG-TTCTTGAACCTTATGGCTCGTAAGATG 388
Query 297 AAAGACACTGACTCTGAAGAAGAGCTCAAAGAAGCTTTCAGGGTTTTCGATAAGGACCAG 356
|| ||||| |||||||| ||||||||||| ||||| ||| |||||||||| |||||||||
Sbjct 389 AAGGACACCGACTCTGAGGAAGAGCTCAAGGAAGCATTCCGGGTTTTCGACAAGGACCAG 448
Query 357 AACGGTTTCATCTCGGCCGCGGAGTTAAGACATGTTATGACTAATCTTGGTGAGAAG-TT 415
|||||||||||||| || || ||| | | ||||| ||||| || |||||||||||| ||
Sbjct 449 AACGGTTTCATCTCAGCAGCTGAGCTCCGCCATGTGATGACAAACCTTGGTGAGAAGCTT 508
Query 416 AACTGATGAAGAAGTTGATGAGATGATCAAAGAAGCTGATGTTGATGGAGATGGTCAGAT 475
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 509 -ACTGATGAAGAAGTTGATGAGATGATCAAGGAAGCTGATGTTGATGGTGATGGTCAGAT 567
Query 476 CAATTATGAAGAGTTTGTCAAAGTTATGATGGCAAAG 512
|| || ||||||||||| || || |||||||| |||
Sbjct 568 TAACTACGAAGAGTTTGTTAAGGTCATGATGGCTAAG 604
> AT3G43810.1 | Symbols: CAM7 | calmodulin 7 | chr3:15664371-15666460
REVERSE LENGTH=803
Length=803
Score = 459 bits (248), Expect = 2e-128
Identities = 387/455 (85%), Gaps = 6/455 (1%)
Strand=Plus/Plus
Query 61 AAAAAATGGCAGATCAGCTCACCGATGATCAGATCTCTGAGTTCAAAGAAGCTTTTAGCC 120
|||||||||| |||||||| |||||||| |||||||| |||||||| |||||||||||||
Sbjct 101 AAAAAATGGCGGATCAGCTAACCGATGACCAGATCTCCGAGTTCAAGGAAGCTTTTAGCC 160
Query 121 TATTCGACAAAGACGGAGATGGTTGCATCACGACGAAAG-AGCTAGGAACAGTGATGAGA 179
||||||||||||||||||||||||| ||||| || |||| |||| || || |||||||||
Sbjct 161 TATTCGACAAAGACGGAGATGGTTGTATCACCAC-AAAGGAGCTTGGGACTGTGATGAGA 219
Query 180 TCA-TTAGGTCAAAATCCAACAGAAGCAGAGTTACAAGATATGATAAACGAAGTAGATGC 238
||| || || || || || |||||||| ||| | || || ||||| |||||||| |||||
Sbjct 220 TCACTTGGG-CAGAACCCGACAGAAGCCGAGCTCCAGGACATGATCAACGAAGTGGATGC 278
Query 239 TGATGGTAACGGAACCATAGACTTCCCTGAGTTTCTCAACCTTATGGCTCGGAAGATGAA 298
|| || ||||| || ||||| ||||| ||||| || ||||| ||||| || ||||||||
Sbjct 279 AGACGGGAACGGGACAATAGATTTCCCAGAGTTCCTGAACCTAATGGCACGTAAGATGAA 338
Query 299 AGACACTGACTCTGAAGAAGAGCTCAAAGAAGCTTTCAGGGTTTTCGATAAGGACCAGAA 358
||||||||| || || |||||||| || ||||| ||||||||||| || |||||||||||
Sbjct 339 AGACACTGATTCAGAGGAAGAGCTTAAGGAAGCCTTCAGGGTTTTTGACAAGGACCAGAA 398
Query 359 CGGTTTCATCTCGGCCGCGGAG-TTAAGACATGTTATGACTAATCTTGGTGAGAAGTTAA 417
||||||||||||||| || ||| || | || || ||||| |||||||| |||||||| |
Sbjct 399 CGGTTTCATCTCGGCGGCTGAGCTTC-GTCACGTGATGACAAATCTTGGGGAGAAGTTGA 457
Query 418 CTGATGAAGAAGTTGATGAGATGATCAAAGAAGCTGATGTTGATGGAGATGGTCAGATCA 477
| ||||| ||||| |||||||||||| ||| ||||| || ||||| |||||||||||||
Sbjct 458 CGGATGAGGAAGTCGATGAGATGATCCGAGAGGCTGACGTCGATGGTGATGGTCAGATCA 517
Query 478 ATTATGAAGAGTTTGTCAAAGTTATGATGGCAAAG 512
| ||||||||||| |||||||| ||||||||||||
Sbjct 518 ACTATGAAGAGTTCGTCAAAGTCATGATGGCAAAG 552
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34611327283
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5