BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481583
Length=560
Score E
Sequences producing significant alignments: (Bits) Value
AT2G27035.1 | Symbols: ENODL20, AtENODL20 | early nodulin-like ... 811 0.0
> AT2G27035.1 | Symbols: ENODL20, AtENODL20 | early nodulin-like
protein 20 | chr2:11535650-11536485 FORWARD LENGTH=746
Length=746
Score = 811 bits (439), Expect = 0.0
Identities = 516/553 (93%), Gaps = 6/553 (1%)
Strand=Plus/Plus
Query 1 ATAATAGTTGAAGTGGAATCAAGTCTTCATAGAGTAGGCGGAGGAAGATACACTTGGAAC 60
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 ATAGTAGTTGAAGTGGAATCAAGTCTTCATAGAGTAGGCGGAGGAAGATACACTTGGAAC 134
Query 61 TCCGACGTTAACTTCTCCGATTGGGCCAACCACCAACGTTTCTACTCCGGCGACTGGCTT 120
||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 135 TCCGATGTCAACTTCTCCGATTGGGCCAACCATCAACGTTTCTACTCCGGCGACTGGCTT 194
Query 121 TATTTCGGGTTCAATCGAACACGTCACAACATCCTTCAAGTAAACAAGAGTAGCTACGAG 180
|||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||
Sbjct 195 TATTTCGGGTTCAATCGAACGCGTCACAATATCCTTCAAGTTAACAAGAGTAGCTACGAG 254
Query 181 CAATGCGTCGACAACGATTACATATTCAACATAACAAGAGGAGGACGAGATGTTTTTCAA 240
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 255 CAATGCGTTGACAACGATTACATATTCAACATAACACGAGGAGGACGAGATGTTTTTCAA 314
Query 241 CTCCTAGAACCAAAGCCTTACTACTTCATTTGTGGTAGAGGTTATTGTCACAAAGGTATG 300
||||| |||||||||||||| || ||||||||||||||||||||||||| ||||||||||
Sbjct 315 CTCCTTGAACCAAAGCCTTATTATTTCATTTGTGGTAGAGGTTATTGTCTCAAAGGTATG 374
Query 301 AAG-TTCGCCATCAAC-GTCCTTCCTCAACCACCACCATCAGCTCCAACCAATCTCGCCT 358
||| || || |||| | |||||||||||||| ||||||||||||||||||||| || |||
Sbjct 375 AAGCTT-GCAATCA-CTGTCCTTCCTCAACCGCCACCATCAGCTCCAACCAATTTCACCT 432
Query 359 CAACCACCACTCATCTCATACCATCAAATGCTATCACCGCAGCCATTCTCATTTTCACCT 418
|||||||||||| |||||||||| ||||||||||||| |||||||||||||||||| |||
Sbjct 433 CAACCACCACTCCTCTCATACCACCAAATGCTATCACTGCAGCCATTCTCATTTTCGCCT 492
Query 419 TTAAAGCTTTACTACTTTGACTATGCTTATGTCATTTGTTTGTTGAGTTGGGTTCAATGT 478
|||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||
Sbjct 493 TTAAAGCTTTACTACTTTGACTATGCTTATCTCGTTTGTTTATTGAGTTGGGTTCAATGT 552
Query 479 ATGAACTATAAAAAAGTTTGGGACACTTTTCCAAACTTCAAAAGTTTTCACTTCAGTAAG 538
||||||||| ||| ||||| ||||| || ||||||||||||||||||||||||| ||||
Sbjct 553 ATGAACTATTAAA--GTTTGAGACACATTCCCAAACTTCAAAAGTTTTCACTTCAATAAG 610
Query 539 TCGGTCGTTTGTT 551
||| | |||||||
Sbjct 611 TCGTTTGTTTGTT 623
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26875268645
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5