BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481585
Length=1062
Score E
Sequences producing significant alignments: (Bits) Value
AT1G07700.3 | Symbols: | Thioredoxin superfamily protein | chr... 665 0.0
> AT1G07700.3 | Symbols: | Thioredoxin superfamily protein | chr1:2379647-2381362
FORWARD LENGTH=1539
Length=1539
Score = 665 bits (360), Expect = 0.0
Identities = 450/492 (91%), Gaps = 12/492 (2%)
Strand=Plus/Plus
Query 496 ATATATCACTGTAGCTCTCTTGGATACTCAGGACTCTCTAGTAGGGGAGG--TATA-ACT 552
|||| ||||||||||| || |||||||||||||||| ||||||||||||| || | |||
Sbjct 708 ATATCTCACTGTAGCTATCATGGATACTCAGGACTCACTAGTAGGGGAGGCATAAACACT 767
Query 553 GTTGGAAACTGTAGATGGGTCTGGCACAGCGGTGGAGTCAGGTTGTCGTTTCCAAGAGTT 612
|||| |||| ||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 768 GTTGAAAACCATAGATGGGTCTGGCACAACAACGGAGTCAGGTTGTCGTTTCCAAGAGCC 827
Query 613 GAGTCTTCATCCATGAGTATAAACATTGCAATGGGTTGTACGTTTCAGCATGGGAGAGCA 672
||||| | | | ||||||||| | |||||||||||| |||||| ||||| ||||
Sbjct 828 GAGTC-T--T-C-----TATAAACATCACTATGGGTTGTACGCTTCAGCGTGGGATAGCA 878
Query 673 AAAAGCTTAAGTCAGGAAAACGTAGTGGAGTTATCTGATGAAAACGATGATCTATGTCCT 732
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 879 AAAAGCTTAAGTCAGGAAAACCTAGTGGAGTTATCTGATGAAAATGATGATCTATGTCCT 938
Query 733 GTGGAGTGTGTCACTGAGTTCAAGACCGATGATGAATTGCTTAGAGTCCTTGAAAAGTCG 792
|||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||
Sbjct 939 GTGGAGTGTGTCACTGAGTTCAAGACAGATGATGAATTGCTTAGCGTTCTTGAAAAGTCG 998
Query 793 AAAGAAACTAATTCTCTGGTCGTGGTTGATTTTTATCGCACTGCTTGTGGGAGTTGTACA 852
||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||| |
Sbjct 999 AAAGAAACTAATTCTTTGGTTGTGGTTGATTTTTATCGCACTGCATGTGGGAGTTGTAAA 1058
Query 853 TACATAGAGCAGGGCTTCTCAAAAGTGTGCAAGCAATCTGGTGACCAAGAAGCTCCTGTT 912
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1059 TACATAGAGCAGGGCTTCTCAAAACTGTGCAAGCAATCTGGTGACCAAGAAGCTCCTGTT 1118
Query 913 ATCTTCCTTAAGCATAATGTGGTAGATGAATATGATGAACAATCTGAAGTCGCAGAAAGG 972
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1119 ATCTTCCTTAAGCATAATGTGGTAGATGAATATGATGAACAATCTGAAGTCGCAGAAAGG 1178
Query 973 CTCCGTATCAAG 984
||||||||||||
Sbjct 1179 CTCCGTATCAAG 1190
Score = 494 bits (267), Expect = 9e-139
Identities = 433/508 (85%), Gaps = 32/508 (6%)
Strand=Plus/Plus
Query 3 CAAAAGAACGCAACttttttttttttGGTTTC-ATCCTTTGGGTCCATAGCGTTGACAGG 61
|||||||||||||||||| ||| | ||| ||||||||||||||||| ||||| ||
Sbjct 95 CAAAAGAACGCAACTTTTATTTCGAAAG-TTCGATCCTTTGGGTCCATAGTATTGAC-GG 152
Query 62 TCCTGTGTAGATTACAAATCTAATTGCTTTAGGGTTTTGTCTTTTTGCCGATTTTGGGGA 121
|| ||||||||||| ||| ||||||||| || | |||||||||| ||||||||
Sbjct 153 --GTGAGTAGATTACAATTCTGATTGCTTTA-GG----G--TTTTTGCCGA-TTTGGGGA 202
Query 122 TGGTTGATCTTTCAATCGAATCCTTAATCTGA-TTGCTGACATTAGAATGTTCATCCCA- 179
|||||||||||||| | ||||||||||||||| ||||||||||||||| |||||| |||
Sbjct 203 TGGTTGATCTTTCAGTTGAATCCTTAATCTGATTTGCTGACATTAGAAGGTTCATTCCAT 262
Query 180 GTTTTGTCTTAATTCCCATCTAGTTGGTGAAAGGGTTTAGA---T----T--TTGCTTGA 230
||||||||||||| |||||||||||| ||||||||||||| | | ||||||||
Sbjct 263 GTTTTGTCTTAATCCCCATCTAGTTGCCGAAAGGGTTTAGATTTTGGGGTCATTGCTTGA 322
Query 231 AATTTATGCTTCAGATGCGTTGAAGTTGTACTGTTTATAATTCTGTGTTGTACTTGGATT 290
||||||||||||||||||||||| |||||| ||||| || ||||||||||||| |||||
Sbjct 323 AATTTATGCTTCAGATGCGTTGATCTTGTACCGTTTAGAACTCTGTGTTGTACTCGGATT 382
Query 291 CAAAGTTGTTGCCTTTACATGTCATATATCTGTTTTGGCTATTT-CATGCCTCACCATTG 349
|||||||||| |||||||||||||||| |||||||||| ||||| |||||||||||||||
Sbjct 383 CAAAGTTGTTCCCTTTACATGTCATATCTCTGTTTTGGTTATTTTCATGCCTCACCATTG 442
Query 350 AATCCTTCGTTTCAGGCCAATCAACCATTTACGAGAGCTATCTTTCAGGCCTGAGTTCAC 409
||| ||||||||||||||| ||||||| |||||| ||||||||||| |||||||||||
Sbjct 443 AATTCTTCGTTTCAGGCCACTCAACCAACTACGAGTGCTATCTTTCACCCCTGAGTTCAC 502
Query 410 TTAAAGGGTCCCTGCTTGATTTGCTTATGAGACTGACTATTGTTTGTGGAGTT-GAATAA 468
| |||| || |||||||| |||||| ||||| || | | | | |||||||||| | |||
Sbjct 503 TGAAAGTGTTCCTGCTTGGTTTGCTGATGAG-CT-A-T-T-GCTTGTGGAGTTAGTTTAA 557
Query 469 -TATCTGCAAATGTCAAGTCTTCTTAAT 495
|||||||||||||||||||||||||||
Sbjct 558 ATATCTGCAAATGTCAAGTCTTCTTAAT 585
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52007764620
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5