BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481588
Length=915
Score E
Sequences producing significant alignments: (Bits) Value
AT2G27080.1 | Symbols: | Late embryogenesis abundant (LEA) hyd... 1354 0.0
> AT2G27080.1 | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family | chr2:11566288-11567504
FORWARD LENGTH=1217
Length=1217
Score = 1354 bits (733), Expect = 0.0
Identities = 836/886 (94%), Gaps = 6/886 (1%)
Strand=Plus/Plus
Query 32 CTATCTCCAATGGCTGAACGAGTCTATCCCACCGATTCACCACCAGAAAGCGGACAATTC 91
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 87 CTATCTCCAATGGCTGAACGAGTCTATCCCGCCGATTCACCACCACAAAGCGGACAATTC 146
Query 92 TCCGGCAACTTCAGCTCCGGCGAGTT-TCCAAGAAAACCAACACCACCACCAGCAACATA 150
||||||||||||||||||||||| || |||| ||||||| ||||||||||| |||||||
Sbjct 147 TCCGGCAACTTCAGCTCCGGCGAATTCCCCAA-AAAACCAGCACCACCACCATCAACATA 205
Query 151 CGTAATCCAAGTCCCAAAAGATCAGATCTACCGTATCCCACCACCGGAAAACGCCCACCG 210
|||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| |||||
Sbjct 206 CGTAATCCAAGTCCCAAAAGATCAAATCTACCGTATACCACCGCCGGAAAACGCACACCG 265
Query 211 CCTTCAACAACTCTCTCGTaaaaaaaCCAATCGCAGTACCTGCAGATGCTGTTTCTGCTC 270
| || ||||||||||||||||||||||||| ||||||| ||| |||||||| ||||||||
Sbjct 266 CTTTGAACAACTCTCTCGTAAAAAAACCAACCGCAGTAACTGTAGATGCTGCTTCTGCTC 325
Query 271 ATTCCTCGCCGCGATTTTCATCTTAATCGTCCTCGCCGGAATATCCTTGGCGATTCTCTA 330
||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 326 ATTCCTCGCCGCGGTTTTCATCTTAATCGTCCTCGCCGGAATATCCTTCGCGGTTCTCTA 385
Query 331 CCTAATATACCGTCCCGAAGCTCCAAAATACTCTATCGAAGGATTCACAGTTTCCGGTAT 390
|||||| ||||||||||||||||| |||||||| |||||||||||| | |||||||||||
Sbjct 386 CCTAATCTACCGTCCCGAAGCTCCTAAATACTCCATCGAAGGATTCTCTGTTTCCGGTAT 445
Query 391 CAATCTGAATTCAACATCTCCGATTTCGCCGAATTTTAACGTTACCGTTAGATCGCGTAA 450
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 446 CAATCTGAATTCAACATCTCCGATTTCGCCGAGTTTTAACGTTACCGTTAGATCACGTAA 505
Query 451 CGGTAACGGTAAAATCGGGGTTTATTACGAGAAAGAAAGCTCTGTGGATGTTTATTACAA 510
|||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||
Sbjct 506 CGGTAACGGTAAAATCGGGGTTTACTACGAGAAAGAAAGCTCTGTTGATGTGTATTACAA 565
Query 511 CGACGTTGATCTATGTAACGGTGTTATGCCGGTGTTTTATCAGCCGGCGAAGAATGTAAC 570
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 566 CGACGTTGATATAAGTAACGGTGTTATGCCGGTGTTTTATCAGCCGGCGAAGAATGTAAC 625
Query 571 GGTCGTTAGGTTGGCGTTAAGTGGGTCTAAAATACAGTTGACTAGTGGTATGAGGAAGGA 630
|||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 626 GGTCGTTAAGTTGGTTTTAAGTGGTTCTAAAATACAGTTGACTAGTGGTATGAGGAAGGA 685
Query 631 GATGCGTAATGAGGTGAGTAAGAAAACGTTGCCGTTTAAGTTGAAGATTAAAGCTCCGGT 690
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 686 GATGCGTAATGAGGTGAGTAAGAAAACGGTGCCGTTTAAGTTGAAGATTAAAGCTCCGGT 745
Query 691 GAAGATTAAGGTTGGTTCCGTTAAGACGTGGTCTATGATCGTTAATGTTGAGTGTGATGT 750
|||||||||| ||||||| |||||||||||| ||||||| ||||||||||| ||||||||
Sbjct 746 GAAGATTAAGTTTGGTTCTGTTAAGACGTGGACTATGATTGTTAATGTTGACTGTGATGT 805
Query 751 AACGGTGGATAAATTGACGGCGCCGTCGAGGATTGTGTCGAGAAAATGCAGTCATGACGT 810
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 806 AACGGTGGATAAATTGACGGCGCCGTCGAGGATTGTGTCGAGAAAATGCAGTCATGACGT 865
Query 811 GGATCTTTGGTGATGAATTTGGTTTTTGTCtttttttttttAAGAAGAAGAAAATAAGAA 870
||||||||||||||||||||| | ||||| ||||||||||||| | ||||||||||||||
Sbjct 866 GGATCTTTGGTGATGAATTTGCTCTTTGT-TTTTTTTTTTTAA-A-GAAGAAAATAAGAA 922
Query 871 AAGAAATGAGTACAGAGGATGTTTT-GGATTTGTAGGATTTATTTT 915
||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 923 AAGAAATGAGTACAGAGGATGTTTTTGGATTTGTAGGATTTTTTTT 968
Score = 56.5 bits (30), Expect = 4e-07
Identities = 32/33 (97%), Gaps = 0/33 (0%)
Strand=Plus/Plus
Query 1 TATTTTTGCTTCTCCGTTTCTCATTTCTCAACT 33
||| |||||||||||||||||||||||||||||
Sbjct 14 TATATTTGCTTCTCCGTTTCTCATTTCTCAACT 46
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44708390830
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5