BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481592
Length=2517
Score E
Sequences producing significant alignments: (Bits) Value
AT2G27090.1 | Symbols: | Protein of unknown function (DUF630 a... 4012 0.0
> AT2G27090.1 | Symbols: | Protein of unknown function (DUF630
and DUF632) | chr2:11567436-11571856 REVERSE LENGTH=2679
Length=2679
Score = 4012 bits (2172), Expect = 0.0
Identities = 2418/2533 (95%), Gaps = 32/2533 (1%)
Strand=Plus/Plus
Query 13 ctct-tctctctc-tctctctACCCATCTGATTCGCTGCTGACT------C-ACAC--A- 60
|||| |||||||| |||||||||||||||||||||||||||||| | |||| |
Sbjct 20 CTCTCTCTCTCTCTTCTCTCTACCCATCTGATTCGCTGCTGACTCACACACGACACAGAC 79
Query 61 CACCTCTCTCCTTCTTCTTCGCCTCCTGTAGAAGAAGACGTTTTG-----TTTT--GTTT 113
||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||
Sbjct 80 CACCTCTCTCCTTCTTCTTCGTCTCCTGTAGAAGAAGACGTTTTGTTTTCTTTTGGGTTT 139
Query 114 GATCCTCT--C---A----AAAGCTCTCAAAGAACCTCTCTTTAGCTTGGACAATGGGTG 164
|||||||| | | ||||||||||||| || ||||||||||||||||||||||||
Sbjct 140 GATCCTCTCGCGTAACTCCAAAGCTCTCAAAGGACATCTCTTTAGCTTGGACAATGGGTG 199
Query 165 CATCAACATCCAGAATAGATGAAGATAAAGCCTTACAGTTATGTAGGGAAAGaaaaaaaT 224
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 200 CATCAACATCCAGAATAGATGAAGATAAAGCCTTACAGTTATGTCGAGAAAGAAAAAAAT 259
Query 225 TCGTCCAACAAGCACTCGATGGAAGATGTTTGTTAGCTGCTGCTCATGTTTCATACGTTC 284
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 260 TCGTCCAACAAGCACTCGATGGAAGATGTTTGTTAGCTGCTGCTCACGTTTCATACGTTC 319
Query 285 AGTCTCTTAAGAGTACCGGAACTGCCCTCAGGAAATTTGCTGAGACTGAAGTTCCAGTTG 344
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 320 AGTCTCTTAAGAGTACCGGAACTGCCCTCAGGAAATTTTCTGAGACTGAAGTTCCAGTTG 379
Query 345 AATCTTCCTTGTACACGTCCACTAGTGCAACACCAGAACAACCTCTTGCTTTAATCGAGA 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 380 AATCTTCCTTGTACACGTCCACTAGTGCAACACCAGAACAACCTCTTGCTTTAATCGAGA 439
Query 405 AATCGGTTTCTCATTTGTCATACTCTCCTCCACCTGCTTCACATTCCCACCATGATACGT 464
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 440 AATCTGTTTCTCATTTGTCATACTCTCCTCCACCTGCTTCACATTCCCACCATGACACGT 499
Query 465 ATTCTCCTCCTCCGTCGCCTCCTAGTACCAGTCTGTTCCAGGTCAATCATATGAAATTCA 524
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 500 ATTCTCCTCCTCCGTCGCCTCCTAGTACCAGTCCGTTCCAGGTCAATCATATGAAATTCA 559
Query 525 GAGGGTTTTCTTCaaaaaaaGTGGAAGAGAAACCGCCAGTTTCTATTGTTGCCACTGTAA 584
||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||| |
Sbjct 560 AAGGGTTTTCTTCAAAAAAAGTGGAAGAGAAACCACCAGTATCTATTATTGCCACTGTTA 619
Query 585 CGTCATCCAGTATACCACGAAGCAGGTCTATAGAAAAGATGGAATCAACCCCATTTGAGG 644
| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 620 CCTCATCCAGTATCCCACCAAGCAGGTCTATAGAAAAGATGGAATCAACCCCATTTGAGG 679
Query 645 AATCTTCTTCCATGCCACCTGAAGCACCTTGGGATTATTTTGGTCTTTCTCATCCAATTG 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 680 AATCTTCTTCCATGCCACCTGAAGCACCTTGGGATTATTTTGGTCTTTCTCATCCAATTG 739
Query 705 ACAACCAGTTTTCTTCTTCTCATGTTGGAAATGGTCATGTGTCGAGATCTGTGAAGGGGG 764
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||
Sbjct 740 ACAACCAGTTTTCTTCTTCTCATGTTGGGAATGGTCATGTGTCGAGATCTGTTAAGGAGG 799
Query 765 AAGATGAAACTCCAGAGGTGGAAGATGATGGTGAGGACTTTTCTTTTCAAGAAAGGGAAG 824
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 800 AAGATGGAACTCCAGAGGAGGAAGATGATGGTGAGGACTTTTCTTTTCAAGAAAGGGAAG 859
Query 825 AGTCCAGAGATTCGGATGATGATGAGTTTGATGAGCCCACAAGTGATACTCTTGTTAGAA 884
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 860 AGTCCAGAGATTCGGATGATGATGAGTTTGATGAACCCACAAGTGATACTCTTGTTAGAA 919
Query 885 GCTTTGAAAACTTCAACAGAGTGCGCCGTGATCACAGTGCTTTACCTCAAAGAGAGGGAG 944
|||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 920 GCTTTGAAAACTTCAATAGAGTGCGCCGTGATCACAGTACTTTGCCTCAAAGAGAGGGAG 979
Query 945 TTGAAAGCGAGTTCTCAGACGCTGAGAAAAGTAAAACTCCTGAGTTATCACCACCAGTGA 1004
| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 980 TGGAAAGCGACTCCTCAGACGCTGAGAAAAGTAAAACTCCTGAGTTATCACCACCAGTGA 1039
Query 1005 CACCTTTAGCAGCCACTCCAGTGAACAAAACACCAAACAAGGAAGATCACACCGAGAACA 1064
| ||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1040 CGCCTTTAGTAGCTACTCCAGTGAACAAAACACCAAACAAGGGAGATCACACCGAGAACA 1099
Query 1065 AGCTTCCTCCCAGGGACTTCTTGTCAAGCATGAAAGAGATAGAGTTGCTCTTTGTTAAAG 1124
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1100 AGCTTCCTCCCAGGGACTTCTTGTCAAGTATGAAAGAGATAGAGTTGCTCTTTGTTAAAG 1159
Query 1125 CTTCAGAGACTGGGAAAGAGGTTCCTAGGATGCTTGAAGCCAATAAATTGCATTTCCGTC 1184
||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 1160 CTTCAGAGACTGGAAAAGAGGTTCCTAGGATGCTTGAAGCCAATAAACTACATTTCCGTC 1219
Query 1185 CAATAGTTCCATCAAAAGAAAGTGGCTCCGGTGCATCATCACTGTTCAAAACATGTCTCT 1244
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1220 CAATAGTTCCATCAAAAGAAAGTGGCTCCGGTGCATCATCACTGTTCAAAACCTGTCTCT 1279
Query 1245 CTTGTGGGGAAGATCCCAAAGATGTACCAGAAGAGCCCGCTCAGAACTCAGTGAAATACT 1304
|||||||||||||||| ||||||||||| |||||||| ||||||||||| ||||||||||
Sbjct 1280 CTTGTGGGGAAGATCCAAAAGATGTACCGGAAGAGCCTGCTCAGAACTCTGTGAAATACT 1339
Query 1305 TGACCTGGCATAGGACCGAATCTTCACGATCCTCATCTTCTCGGAATCCTCTTGGAGGAA 1364
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1340 TGACCTGGCATAGGACTGAATCTTCACGATCCTCATCTTCTCGGAATCCTCTCGGAGGAA 1399
Query 1365 TGAATTCTGATGATGTGGAAGAGCTGAATAGTAATCTCTTTGAAAACATTTGCATGATTG 1424
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1400 TGAATTCTGATGATGTGGAAGAGCTCAATAGTAATCTCTTTGAAAACATTTGCATGATTG 1459
Query 1425 CTGGAAGCCATGCCTCAACGCTAGACAGACTGTATGCATGGGAGCGGAAGCTCTATGATG 1484
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1460 CTGGAAGCCATGCCTCAACGCTAGACAGATTGTATGCATGGGAGCGGAAGCTCTATGATG 1519
Query 1485 AAGTTAAGGGGAGTCAGACTGTGCGGAGAGAGTATGATGAAAAGTGCAGAATTTTGAGAG 1544
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1520 AAGTTAAGGGGAGTCAGACTGTGCGGAGAGAGTATGACGAAAAGTGCAGAATTTTGAGAG 1579
Query 1545 AACTTGAATCAGAAGGTAAAGGTTCACAAAGAATAGACAAGACACGTGCAGTTGTGAAAG 1604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1580 AACTTGAATCAGAAGGTAAAGGTTCACAAAGAATAGACAAGACACGTGCAGTTGTGAAAG 1639
Query 1605 ACCTTCACTCCAGAATCAGAGTTGCGATTCATAGGATCGACTCAATATCAAGACGGATTG 1664
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1640 ACCTTCACTCCAGAATCAGAGTGGCGATTCATAGGATCGACTCAATATCAAGACGGATTG 1699
Query 1665 AAGAACTCCGCGACAACGAGCTCCAGCCTCAACTTGAGGAACTCATTGAAGGGTTGAGTC 1724
|||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1700 AAGAACTCCGTGACAATGAGCTCCAGCCTCAACTTGAAGAACTCATTGAAGGGTTGAGTC 1759
Query 1725 GTATGTGGGAAGTGATGTTGGAATGCCACAAGGTTCAGTTTCAGTTAATCAAAGCGTGTT 1784
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1760 GTATGTGGGAAGTAATGTTGGAATGCCACAAGGTTCAGTTTCAGTTAATCAAAGCGTGTT 1819
Query 1785 ACAGAGGCGGAAACATTAAACTCAACATGCAATCGGAGTTGCACAGACAAGTAACATCTC 1844
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1820 ACAGAGGCGGAAACATTAAACTCAACATGCAATCAGAGTTGCACAGACAAGTAACATCTC 1879
Query 1845 ACCTTGAAGATGAACTGAGCGCGTTGGCCTCAAGCTTCACAAAATGGATCACAGGCCAGA 1904
||||||||||||| || |||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1880 ACCTTGAAGATGAGCTCTGCGCATTGGCCTCAAGCTTTACAAAATGGATCACAGGCCAGA 1939
Query 1905 AATCATATATTCAAGCGATAAACGAGTGGCTAGTAAAATGTGTCGCCTTACCACAACGAT 1964
|||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1940 AATCGTATATTCAAGCGATAAACGAGTGGCTGGTGAAATGTGTCGCCTTACCACAACGAT 1999
Query 1965 CCTCCAAACGGAAAAGGCGTGCCCCACAACCGTCTTTGAGAAACTATGGTCCTCCCATTT 2024
|| ||||| ||||||||||| |||||||||||||||||||||||||| || |||||||
Sbjct 2000 CC---AAACGAAAAAGGCGTGCACCACAACCGTCTTTGAGAAACTATGGGCCCCCCATTT 2056
Query 2025 ATGCAACCTGTGGAATCTGGCTAGAAAAGCTCGAAGTTTTACCTACCAAAGAGGTTTCAG 2084
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2057 ATGCAACCTGTGGAATCTGGCTAGAAAAGCTCGAAGTCTTACCTACCAAAGAGGTTTCAG 2116
Query 2085 GCTCCATTAAAGCACTTGCTTCTGATGTTGCCAGGTTCTTGCCTCGTCAAGAGAAGAGTC 2144
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||
Sbjct 2117 GCTCCATTAAAGCACTTGCTTCTGATGTTGCCAGGTTCTTGCCACGTCAGGAGAAGAATC 2176
Query 2145 GCACCAAGAAACATCGGTCTGGTGAGAACAAAAACGATTTGACAGCTCACATGCTGCAAG 2204
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2177 GCACCAAGAAACATCGATCTGGTGAGAACAAAAACGATTTGACAGCTCACATGTTGCAAG 2236
Query 2205 ATGAGACATTGGAGGATTGTGGTCCGGGATTTGATCGGTTTAGGACAAGCTTGGAAGCAT 2264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2237 ATGAGACATTGGAGGATTGTGGTCCGGGATTTGATCGGTTTAGGACAAGCTTGGAAGGAT 2296
Query 2265 TTGTTGGACAACTCAACCAGTTTGCAGAATCATCAGTGAAAATGTATGAGGAACTTAAAC 2324
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2297 TTGTTGGACAACTCAACCAGTTTGCAGAATCATCAGTGAAAATGTATGAGGAACTTAAAG 2356
Query 2325 AAGGAATCCACGGAGCTAAGAACAACTACGAGCAGTTGAAGAAGGCTTACTCTTCACAAG 2384
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 2357 AAGGAATCCACGGAGCTAAAAACAACTACGAGCAGTTGAAGAAGGCGTACTCTTCACAAG 2416
Query 2385 GAAAATGAtttttttttGGTTTCTTGGAAAAATGGAGTTTTGTCAGGTTAAAATTTTGGA 2444
|||||||| ||||||| |||||||| |||||||||||||||||||||||| |||||||||
Sbjct 2417 GAAAATGAATTTTTTT-GGTTTCTTAGAAAAATGGAGTTTTGTCAGGTTAGAATTTTGGA 2475
Query 2445 GGGAAAATTGGGTTTAGGCATTTGTAAATGCAAAAGAGATTATATAAAAAGATTGCTTCA 2504
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 2476 GGGAAAATTGGGTTTAGGCATTTGTAAATGCAAAAGGGATTACATAAAAAGATTGCTTCA 2535
Query 2505 AGTATGAATATGG 2517
|| |||||| |||
Sbjct 2536 AGCATGAATTTGG 2548
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 124915688070
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5