BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481593
Length=2388
Score E
Sequences producing significant alignments: (Bits) Value
AT2G27100.1 | Symbols: SE | C2H2 zinc-finger protein SERRATE (S... 3568 0.0
> AT2G27100.1 | Symbols: SE | C2H2 zinc-finger protein SERRATE
(SE) | chr2:11572550-11576658 FORWARD LENGTH=2501
Length=2501
Score = 3568 bits (1932), Expect = 0.0
Identities = 2137/2235 (96%), Gaps = 18/2235 (1%)
Strand=Plus/Plus
Query 1 CCGATTTAGGGTTCCGATCCAAATGGCCGATATTACTCTTCCTCCGTCTGATTCCGCCGT 60
||||||||||||||||| | ||||||||||| ||| ||||||||||||||||| ||||
Sbjct 16 CCGATTTAGGGTTCCGAACGAAATGGCCGATGTTAATCTTCCTCCGTCTGATT---CCGT 72
Query 61 CGATAACCGTCTCCCTGAGAAATCTACCTCTTCCTCACCACCACCTCCACCGGCTTCTTC 120
|||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||
Sbjct 73 CGATAACCGTCTCCCTGAGAAATCAACCTCTTCCTCACCACCTCCTCCACCGCCTTCTTC 132
Query 121 CTCTCTACCGCAACAAGAACAGGAACAAGACCAGCAACAGCCTCCGCAACGCCGTGAGAG 180
||||| ||||| || |||||||||||||||||||| |||| ||||| ||||||||||||
Sbjct 133 TTCTCTGCCGCAGCAGGAACAGGAACAAGACCAGCAGCAGCTTCCGCTACGCCGTGAGAG 192
Query 181 AGATTCACGAGA----C----C----GAGACATCGAACGTCCTCCTCCTAATCGCCGTGA 228
|||||||||||| | | ||||||||||||||||||| ||||||||||||||
Sbjct 193 AGATTCACGAGAGCGTCGTGACGAGAGAGACATCGAACGTCCTCCGCCTAATCGCCGTGA 252
Query 229 CCGTGACCGTTCGCCTCTCCCACCGCCTCGTAGGGATTATAAGAGACGGCCTAGCTTGAG 288
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 253 ACGTGACCGTTCGCCTCTCCCACCGCCTCGTAGGGATTACAAGAGACGTCCTAGCTTGAG 312
Query 289 TCCTCCGCCACCGTACAGAGATAGGCGGCACTCTCCTCCTCAGCGTCGTTCGCCTCCTCA 348
||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 313 TCCTCCGCCACCGTATAGAGATAGGCGACACTCTCCTCCTCAGCGTCGCTCGCCTCCTCA 372
Query 349 TAAGCGTTATCGGAGGGATGATAATGGCTATGATGCTCGCCGTGGCAGTCCTCGTGGTGG 408
|||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 373 AAAGCGTTATCGGAGGGATGATAATGGCTATGATGGTCGCCGTGGTAGTCCTCGTGGTGG 432
Query 409 CTATGGGCCTCCCGATAGAAGATTTGGATATGACCATGGTGGAGGATATGACCGTGAAAT 468
|||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 433 CTATGGACCACCCGATAGAAGATTTGGGTATGACCATGGTGGAGGATATGACCGTGAAAT 492
Query 469 GGGTGGGAGGCCTAATTATGGTGATGAAAGGCCTCATGGCCGCTTTATGGGTCGCTATCA 528
||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 493 GGGTGGGAGGCCTGGTTATGGTGATGAAAGGCCTCATGGTCGCTTTATGGGTCGCTATCA 552
Query 529 AGACTGGGAGGGAGGACGTGGAGGTTATGGTGATGCTTCCAACAGTGGAAATACTCAAAG 588
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 553 GGACTGGGAGGGAGGACGTGGAGGTTATGGTGATGCTTCCAACAGTGGAAATCCTCAAAG 612
Query 589 GGATGGATTGATGTCATACAAACAATTTATCCAGGAGTTGGAAGATGATATATTGCCATC 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 613 GGATGGATTGATGTCATACAAACAATTTATCCAGGAGTTGGAAGATGATATATTGCCATC 672
Query 649 AGAAGCTGAACGCAGGTATCAAGAATATAAGTCAGAGTATATCACAACACAGAAACGTGC 708
|||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 673 TGAAGCTGAACGCAGATATCAAGAATACAAGTCAGAGTATATCACAACACAAAAACGTGC 732
Query 709 CTTTTTTAACACCCACAAAGAGGAAGACTGGTTAAAAAATAAATATCATCCAACAAACTT 768
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 733 CTTTTTTAACACCCACAAAGAGGAAGACTGGTTGAAAAATAAGTATCATCCAACAAACTT 792
Query 769 ACTCTCTGTCATAGAAAGGAGGAATGAGCTTGCACAGAAGGTGGCAAAGGATTTCTTACT 828
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 793 ACTATCTGTCATAGAAAGGAGGAATGACCTTGCACAGAAGGTGGCAAAGGATTTCTTACT 852
Query 829 TGATTTACAAAGCGGGACACTAGATTTAGGTCCTGCAGTGACAGCATTGAATAAATCCGG 888
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 853 TGATTTACAAAGCGGGACACTAGATTTAGGCCCTGCAGTGACAGCATTGAATAAATCCGG 912
Query 889 CCGGACCAGTGAACCAAATTCTGAGGATGAAGCCGCTGGTGGTGGTAAAAGAAAAAGACA 948
|||||||||||| || ||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 913 CCGGACCAGTGAGCCTAATTCTGAGGATGAAGCCGCTGGTGTTGGTAAAAGAAAAAGGCA 972
Query 949 TGGTATGGGGGGAGCTAAAGAGACTGAACTTCTTTCAGCCGCACCGAAAGCACCCAGTTT 1008
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 973 TGGTATGGGTGGAGCTAAAGAGAATGAACTTCTTTCAGCCGCACCGAAAGCACCCAGTTT 1032
Query 1009 CACCTCTGATCCAAAGAGAATTCTGACTGACGTTGAACAAACACAAGCCCTTGTGCGTAA 1068
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1033 CACCTCTGATCCAAAGAGAATCCTGACTGACGTTGAACAAACACAAGCCCTTGTGCGTAA 1092
Query 1069 GCTAGACTCTGAGAAGAAAATTGAGGAAAATGTTTTACAAGGTTCAGAAACTGAAAAATC 1128
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1093 GCTAGACTCTGAGAAAAAAATTGAGGAAAATGTTTTACAAGGTTCAGAAACTGAAAAATC 1152
Query 1129 GGGTAGAGAAAAGTTACACAGTGGTTCGACTGGTCCAGTTGTAATCATAAGGGGGTTGAC 1188
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1153 AGGTAGAGAAAAGTTACACAGTGGTTCTACTGGTCCAGTTGTAATCATAAGGGGGTTGAC 1212
Query 1189 ATCTGTGAAAGGCCTTGAGGGTGTTGAATTACTCGACACGCTTGTTACATATCTATGGCG 1248
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1213 ATCTGTGAAAGGCCTTGAGGGTGTTGAATTACTTGACACGCTTGTTACATATCTATGGCG 1272
Query 1249 TGTTCATGGTGTGGACTATTACGGAAAGGTTGAAACAAATGAAGCTAAGGGTCTGCGGCA 1308
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1273 TGTTCATGGTCTGGACTATTACGGAAAGGTTGAAACAAATGAAGCTAAGGGTTTGCGGCA 1332
Query 1309 TGTGAGAGCTGAAGGAAAAGGTTCTGATGCAAAAGGAGATGAGAGTGAAAGTAAATTTGA 1368
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||
Sbjct 1333 TGTGAGAGCTGAAGGAAAAGTTTCTGATGCAAAAGGAGATGAGAATGAAAGTAAATTCGA 1392
Query 1369 CTCTCATTGGCAAGAGAGGTTGAAAGGTCAAGATCCCTTGGAAGTGATGGCTGCCAAAGA 1428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1393 CTCTCATTGGCAAGAGAGGTTGAAAGGTCAAGATCCCTTGGAAGTGATGGCTGCCAAAGA 1452
Query 1429 GAAGATAGATGCTGCCGCTACGGAAGCTTTAGATCCACATGTCCGAAAGATTAGAGATGA 1488
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1453 GAAGATAGATGCTGCCGCTACTGAAGCTTTAGATCCACATGTCCGAAAGATTAGAGATGA 1512
Query 1489 GAAGTATGGTTGGAAATATGGTTGTGGAGCCAAGGGGTGCACGAAGCTGTTTCATGCTGC 1548
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1513 GAAGTATGGTTGGAAATATGGTTGTGGAGCCAAGGGCTGCACGAAGCTGTTTCATGCTGC 1572
Query 1549 TGAATTTGTGTACAAGCATCTCAAGCTGAAACACACTGAGCTTGTCACAGAGCTGACTAC 1608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1573 TGAATTTGTGTACAAGCATCTCAAGCTGAAACACACTGAGCTTGTCACAGAGCTGACTAC 1632
Query 1609 CAAAGTTCGGGAAGAACTGTATTTTCAGAACTATATGAATGATCCTAATGCTCCAGGAGG 1668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1633 CAAAGTTCGGGAAGAACTGTATTTTCAGAACTATATGAATGATCCTAATGCTCCAGGAGG 1692
Query 1669 ACAACCAGCCACGCAGCAATCTGGCCCGAGAGATAGACCTATAAGACGTAAACCCAGCAT 1728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1693 ACAACCAGCCACGCAGCAATCTGGCCCGAGAGATAGACCTATAAGACGTAAACCCAGCAT 1752
Query 1729 GGAGAACAGACTGAGGGATGATCGAGGTGGACGCAGGGAGCGTGATGGACGTGCTAATGG 1788
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 1753 GGAGAACAGACTGAGGGATGATAGAGGTGGACGCAGAGAGCGTGATGGACGTGCTAATGG 1812
Query 1789 AAATGACAGAATTGAACGGTCAGAAGATCAACAGAGAGGGGATAATGATGGTGGAAATCC 1848
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1813 AAATGACAGAAATGATCGGTCAGAAGATCAACAGAGAGGGGATAATGATGGTGGAAATCC 1872
Query 1849 TGGGGAACTTGGGTACGATGCATTTGGTGGACAAGGTGGCGTTCATGTTCCTCCCTTCTT 1908
||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1873 TGGGGAAGTTGGGTATGATGCATTTGGTGGACAAGGTGGTGTTCATGTTCCTCCCTTCTT 1932
Query 1909 ATCGGATATAAACCCACCACCAATGCTGATGCCTGTTCCCGGTGCCGGGCCACTGGGACC 1968
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1933 ATCGGATATAAACCCACCACCAATGCTGATGCCTGTTCCTGGTGCTGGGCCACTGGGACC 1992
Query 1969 ATTTGTACCAGCACCACCTGAGGTTGCTATGCAGATGTTCAGGGACCCAAGTGGACCCAA 2028
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1993 ATTTGTACCAGCACCACCTGAAGTTGCTATGCAGATGTTCAGGGACCCAAGTGGACCCAA 2052
Query 2029 CAACCCTCCTTTTGAAGGTAGCGGGAGAGGTGGACCTGCCCCTTTTCTTTTGTCTCCGGC 2088
| || |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2053 C--CC-TCCTTTTGAAGGTAGCGGGAGAGGTGGACCTGCCCCTTTTCTGTTGTCTCCGGC 2109
Query 2089 CTTTAGACAGGACCCTAGACGGCTACGCAGTTACCAAGACCTAGATGCTCCAGAGGAAGA 2148
||||||||| || ||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 2110 CTTTAGACAAGATCCTAGACGGCTGCGCAGCTACCAAGACCTAGATGCTCCAGAGGAAGA 2169
Query 2149 GGTGACCGTTATTGATTACAGGAGCTTGTAGACAAGAAAGGGCTAGAGAGATGCCGAGTT 2208
|||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 2170 AGTGACCGTTATTGATTACAGGAGCTTGTAGACAAGACAGGGCTAGAGAGATCCCGAGTT 2229
Query 2209 TACCCGTTTGGGTTG 2223
||| ||| ||||||
Sbjct 2230 TACTGGTTCGGGTTG 2244
Score = 124 bits (67), Expect = 3e-27
Identities = 150/184 (82%), Gaps = 29/184 (16%)
Strand=Plus/Plus
Query 2233 ATTATTTCTTGTTCCTCCCAATTTTCACTCACTAAAGCGTAAAATACGCACTCCTTA--T 2290
||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 2312 ATTATGTCTTGTTCCTCCCAATTTTCACTCACTAAAGCGTAAAATACGCACTCCATACAT 2371
Query 2291 --C------G------A---TTTT-CATGTGCTT----ACTAATTCTGTTCGAC-A--AT 2325
| | | |||| ||||||||| |||||||||||||||| | ||
Sbjct 2372 TTCCTTATTGTTTTTCAAAATTTTTCATGTGCTTTCTTACTAATTCTGTTCGACGATGAT 2431
Query 2326 TACATAAATGGCATGCA-AATTTCTTGTATTGAATAATCCGTTTTATCAACATTGTTTGT 2384
||||||||| ||||| | |||||||||||||||||||| ||||||||| |||||||||||
Sbjct 2432 TACATAAATAGCATG-AGAATTTCTTGTATTGAATAATGCGTTTTATCCACATTGTTTGT 2490
Query 2385 TATC 2388
||||
Sbjct 2491 TATC 2494
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 118573687290
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5