BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481599
Length=2319
Score E
Sequences producing significant alignments: (Bits) Value
AT2G27100.1 | Symbols: SE | C2H2 zinc-finger protein SERRATE (S... 3070 0.0
> AT2G27100.1 | Symbols: SE | C2H2 zinc-finger protein SERRATE
(SE) | chr2:11572550-11576658 FORWARD LENGTH=2501
Length=2501
Score = 3070 bits (1662), Expect = 0.0
Identities = 2044/2225 (92%), Gaps = 40/2225 (2%)
Strand=Plus/Plus
Query 1 CCGATTTAGGGTTCCGATCAAAATGGCCGATG-AAACTCTTCCTCCGTCTGAATCCGTCG 59
||||||||||||||||| | |||||||||||| || ||||||||||||||| |||||||
Sbjct 16 CCGATTTAGGGTTCCGAACGAAATGGCCGATGTTAA-TCTTCCTCCGTCTGATTCCGTCG 74
Query 60 ATAACCGTCTCCCTGAGAAATTAACCTCTTCATCACCACCTCCTCCACCGCCTTCTTCCT 119
||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
Sbjct 75 ATAACCGTCTCCCTGAGAAATCAACCTCTTCCTCACCACCTCCTCCACCGCCTTCTTCTT 134
Query 120 CTCTGCCGCAACAGGAGCAGGAACAAGACCAGGAACAGCCTCCGCAACGCCGTGAGAGAG 179
|||||||||| ||||| ||||||||||||||| | |||| ||||| ||||||||||||||
Sbjct 135 CTCTGCCGCAGCAGGAACAGGAACAAGACCAGCAGCAGCTTCCGCTACGCCGTGAGAGAG 194
Query 180 ATTCTCGCGAGCGGCGTGATGAGAGAGACATCGAACG---TCCACCTAATCGCCGCGACC 236
|||| || ||||| ||||| ||||||||||||||||| ||| ||||||||||| || |
Sbjct 195 ATTCACGAGAGCGTCGTGACGAGAGAGACATCGAACGTCCTCCGCCTAATCGCCGTGAAC 254
Query 237 GTGACCGTTCGCCTCTCCCACCGCCTCGTAGGGATTACAAGAGACGGCCTAGCTTGAGTC 296
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 255 GTGACCGTTCGCCTCTCCCACCGCCTCGTAGGGATTACAAGAGACGTCCTAGCTTGAGTC 314
Query 297 CTCCGCCACCGTACAGAGATAGACGGCACTCTCCTCCACAGCGTCGCTCGCCTCCTCAGA 356
||||||||||||| |||||||| || ||||||||||| |||||||||||||||||||| |
Sbjct 315 CTCCGCCACCGTATAGAGATAGGCGACACTCTCCTCCTCAGCGTCGCTCGCCTCCTCAAA 374
Query 357 AGCGTTACCGGAGGGATGATAATGGCTATGATACTCGCCGTGGT-G-GCT-AT-G-GGCC 411
||||||| |||||||||||||||||||||||| |||||||||| | || | | |||
Sbjct 375 AGCGTTATCGGAGGGATGATAATGGCTATGATGGTCGCCGTGGTAGTCCTCGTGGTGGCT 434
Query 412 ACCGGA-CAGAAGTTTGCATGTTAGATTTGGATATGACCATGGTGGAGGATATGACCGTG 470
| ||| || | | | | |||||||| ||||||||||||||||||||||||||||
Sbjct 435 A-TGGACCACCCG-AT--A-G-AAGATTTGGGTATGACCATGGTGGAGGATATGACCGTG 488
Query 471 AAATGGGTGGGAGGCCTGGTTATGGTGATGAAAGGCCTCATGGCCGCTTTATGGGTCGCT 530
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 489 AAATGGGTGGGAGGCCTGGTTATGGTGATGAAAGGCCTCATGGTCGCTTTATGGGTCGCT 548
Query 531 ATCAAGACTGGGAGGGAGGACGTGGAGGTTATGGTGATGCTTCCAACAGTGGAAATACTC 590
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 549 ATCAGGACTGGGAGGGAGGACGTGGAGGTTATGGTGATGCTTCCAACAGTGGAAATCCTC 608
Query 591 AAAGGAATGGATTGATGTCATACAAACAATTTATCCAGGAGTTGGAAGATGATATATTGC 650
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 609 AAAGGGATGGATTGATGTCATACAAACAATTTATCCAGGAGTTGGAAGATGATATATTGC 668
Query 651 CATCTGAAGCTGAACGCAGATATCAAGAATATAAGTCAGAGTATATTACAACACAGAAAC 710
||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||
Sbjct 669 CATCTGAAGCTGAACGCAGATATCAAGAATACAAGTCAGAGTATATCACAACACAAAAAC 728
Query 711 GTGTCTTTTTTAACAGTCACAAAGAGGAAGAATGGTTGAAGAATAAGTATCATCCAACAA 770
||| ||||||||||| |||||||||||||| |||||||| |||||||||||||||||||
Sbjct 729 GTGCCTTTTTTAACACCCACAAAGAGGAAGACTGGTTGAAAAATAAGTATCATCCAACAA 788
Query 771 ACTTACTCTCTGTCATAGAAAGGAGGAATGAACTTGCACGGAAGGTGGCGAAGGATTTCT 830
||||||| ||||||||||||||||||||||| ||||||| ||||||||| ||||||||||
Sbjct 789 ACTTACTATCTGTCATAGAAAGGAGGAATGACCTTGCACAGAAGGTGGCAAAGGATTTCT 848
Query 831 TACTTGATTTACAGAGCGGGGCAATAGATTTAGGTCCTGCAGTGACAGCATTGGATAAAT 890
||||||||||||| |||||| || |||||||||| |||||||||||||||||| ||||||
Sbjct 849 TACTTGATTTACAAAGCGGGACACTAGATTTAGGCCCTGCAGTGACAGCATTGAATAAAT 908
Query 891 CCAGCAGGGCCAGTGAGCAGATTTCAGATGATGAAGCAGCTGGTGGTGGCAAAAGAAAGA 950
|| || || ||||||||| | ||| || |||||||| ||||||| ||| |||||||| |
Sbjct 909 CCGGCCGGACCAGTGAGCCTAATTCTGAGGATGAAGCCGCTGGTGTTGGTAAAAGAAAAA 968
Query 951 GACATGGTAGCAGG-GAAGCTAAAGAGACTGAACTTCTGTCAGCCGCTCCGAAAGCATCC 1009
| ||||||| || | ||||||||||| ||||||||| |||||||| ||||||||| ||
Sbjct 969 GGCATGGTA-TGGGTGGAGCTAAAGAGAATGAACTTCTTTCAGCCGCACCGAAAGCACCC 1027
Query 1010 AGTTTCACTTCTGATCCAAAGAGAATCTTAACTGACATTGAACAAGCACAAGCCCTTGTG 1069
|||||||| |||||||||||||||||| | |||||| |||||||| ||||||||||||||
Sbjct 1028 AGTTTCACCTCTGATCCAAAGAGAATCCTGACTGACGTTGAACAAACACAAGCCCTTGTG 1087
Query 1070 CGTAAGCTAGACTCGGAGAAAGGAATTGAGGAAAACGTTTTGTC-AGGTTCAGAAAATGA 1128
|||||||||||||| |||||| |||||||||||| ||||| | ||||||||||| |||
Sbjct 1088 CGTAAGCTAGACTCTGAGAAAAAAATTGAGGAAAATGTTTT-ACAAGGTTCAGAAACTGA 1146
Query 1129 CAAATTGGGTAGAGAAAAGTTACACAGTGGTTCGACTGGTCCAGTTATAATCATAAGGGG 1188
|||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 1147 AAAATCAGGTAGAGAAAAGTTACACAGTGGTTCTACTGGTCCAGTTGTAATCATAAGGGG 1206
Query 1189 GTTGACATCTGTGAAAGGCCTTGAGGGCGTTGAATTGCTTGACACACTTGTTACATATCT 1248
||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||
Sbjct 1207 GTTGACATCTGTGAAAGGCCTTGAGGGTGTTGAATTACTTGACACGCTTGTTACATATCT 1266
Query 1249 ATGGCGTGTTCATGGTGTGGACTATTATGGAAAGGTTGAAACAAATGAAGCTAAGGGTAT 1308
|||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |
Sbjct 1267 ATGGCGTGTTCATGGTCTGGACTATTACGGAAAGGTTGAAACAAATGAAGCTAAGGGTTT 1326
Query 1309 GCGGCATGTGAGAGCTGAAGGAAAAGGTTCTGATGCAAAAGGAGATGAGAGTGAAAGTAA 1368
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1327 GCGGCATGTGAGAGCTGAAGGAAAAGTTTCTGATGCAAAAGGAGATGAGAATGAAAGTAA 1386
Query 1369 ATTTGACTCTCATTGGCAAGAGAGGTTGAAAGGTCAAGATCCCTTGGAAGTGATGGCTGC 1428
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1387 ATTCGACTCTCATTGGCAAGAGAGGTTGAAAGGTCAAGATCCCTTGGAAGTGATGGCTGC 1446
Query 1429 CAAAGAGAAGATAGATGCTGCCGCTACTGAAGCTTTAGATCCACATGTCCGAAAGATTAG 1488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1447 CAAAGAGAAGATAGATGCTGCCGCTACTGAAGCTTTAGATCCACATGTCCGAAAGATTAG 1506
Query 1489 AGATGAGAAGTATGGTTGGAAATATGGTTGTGGAGCCAAAGGCTGCACGAAGCTGTTTCA 1548
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1507 AGATGAGAAGTATGGTTGGAAATATGGTTGTGGAGCCAAGGGCTGCACGAAGCTGTTTCA 1566
Query 1549 TGCGGCTGAATTTGTGTACAAGCATCTCAAACTGAAACACACTGAGCTTGTCACAGAGCT 1608
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1567 TGCTGCTGAATTTGTGTACAAGCATCTCAAGCTGAAACACACTGAGCTTGTCACAGAGCT 1626
Query 1609 GACTACCAAAGTTCGGGAAGAACTGTATTTGCAGAACTATATGAATGATCCTAATGCTCC 1668
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1627 GACTACCAAAGTTCGGGAAGAACTGTATTTTCAGAACTATATGAATGATCCTAATGCTCC 1686
Query 1669 AGGAGGACAACCAGCTACTCAGCAATCTGGCCTGAGAGATAGACCTATGAGACGTAGACC 1728
||||||||||||||| || ||||||||||||| ||||||||||||||| ||||||| |||
Sbjct 1687 AGGAGGACAACCAGCCACGCAGCAATCTGGCCCGAGAGATAGACCTATAAGACGTAAACC 1746
Query 1729 -AGGCATGGAGAACAGACTGAGGGATGATCGAGGTGGACGCAGAGAGCGTGATGGACGTG 1787
|| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1747 CAG-CATGGAGAACAGACTGAGGGATGATAGAGGTGGACGCAGAGAGCGTGATGGACGTG 1805
Query 1788 CTAATGGAAATGACAGAAATGATCGGTCAGAGGATCAACAGAGAGGTGATGGTGATGGTC 1847
||||||||||||||||||||||||||||||| |||||||||||||| ||| |||
Sbjct 1806 CTAATGGAAATGACAGAAATGATCGGTCAGAAGATCAACAGAGAGGGGATA---ATG--- 1859
Query 1848 CTGATGGTGGAAATCCTAGGGAAGTTGGGTACGATGCATTTGGTGGACAAGGTGGTGTTC 1907
|||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1860 ---ATGGTGGAAATCCTGGGGAAGTTGGGTATGATGCATTTGGTGGACAAGGTGGTGTTC 1916
Query 1908 ATGTTCCTCCCTTCTCATCGGATATAAACCCACCACCAATGCTGATGCCTGTTCCTGGTG 1967
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1917 ATGTTCCTCCCTTCTTATCGGATATAAACCCACCACCAATGCTGATGCCTGTTCCTGGTG 1976
Query 1968 CCGGGCCACTAGGACCATTTGTACCTGCACCACCTGA-GTTTGCAATGCAGATGTTC--- 2023
| |||||||| |||||||||||||| ||||||||||| ||| || ||||||||||||
Sbjct 1977 CTGGGCCACTGGGACCATTTGTACCAGCACCACCTGAAGTT-GCTATGCAGATGTTCAGG 2035
Query 2024 --CCTG-GTGGACCCAATCCTCCTTTCGAAGGTAACGGCAGAGGTGGACCTGCACCATTT 2080
|| |||||||||| |||||||| ||||||| ||| |||||||||||||| || |||
Sbjct 2036 GACCCAAGTGGACCCAACCCTCCTTTTGAAGGTAGCGGGAGAGGTGGACCTGCCCCTTTT 2095
Query 2081 CTTTTGTCTCCGGCCTTTAGACAGGATCCTAGACGGCTACGCAGTTACCAAGACCTAGAT 2140
|| |||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||
Sbjct 2096 CTGTTGTCTCCGGCCTTTAGACAAGATCCTAGACGGCTGCGCAGCTACCAAGACCTAGAT 2155
Query 2141 GCTCCAGAGGAAGAGGTGACCGTTATTGATTACAGGAGTTTGTAGAAAAGAAAGGGCTAG 2200
|||||||||||||| ||||||||||||||||||||||| ||||||| |||| ||||||||
Sbjct 2156 GCTCCAGAGGAAGAAGTGACCGTTATTGATTACAGGAGCTTGTAGACAAGACAGGGCTAG 2215
Query 2201 AGAGA 2205
|||||
Sbjct 2216 AGAGA 2220
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115109849685
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5