BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481600
Length=755
Score E
Sequences producing significant alignments: (Bits) Value
AT2G27130.1 | Symbols: | Bifunctional inhibitor/lipid-transfer... 965 0.0
> AT2G27130.1 | Symbols: | Bifunctional inhibitor/lipid-transfer
protein/seed storage 2S albumin superfamily protein | chr2:11595292-11596542
FORWARD LENGTH=765
Length=765
Score = 965 bits (522), Expect = 0.0
Identities = 694/773 (90%), Gaps = 28/773 (4%)
Strand=Plus/Plus
Query 1 AAAGTTAACTTGTCCAAATAAAATTAATTCCCCATTCCAAAAAACACTGAGTGCAAGC-A 59
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 1 AAAGTTAACTTGTCCAAATAAAATTAATTCCCCATTCCAAAAAACATTGAGTGCAATCTC 60
Query 60 ATCTCAGATCTAATCACATTCCAACAGATGCTCACCACCAACATC-CTCGCCATCCT-CT 117
| |||||||||||||||||||| ||||||||||||||||||| | |||||| |||| ||
Sbjct 61 AGATCAGATCTAATCACATTCCACCAGATGCTCACCACCAACA-CTCTCGCCGTCCTCCT 119
Query 118 --T-C-C-TCCTCACTCTCTCCTCCGGGCAGACTCCTCCGGCACCAGAACCCACCGCCGC 172
| | | |||||| ||||| |||||||||| | ||||||||||| ||||||| ||||||
Sbjct 120 CCTCCTCTTCCTCAGTCTCTGCTCCGGGCAGTCACCTCCGGCACCGGAACCCATCGCCGC 179
Query 173 CGACGGACCTTCATCTCCGGCGAACTGTCTAGTATCTATGCTAAACGTATCAGACTGCTT 232
||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 180 CGATGGACCTTCATCTCCGGTTAACTGTCTAGTATCTATGCTAAACGTATCAGACTGCTT 239
Query 233 CTCGTACGTTCAAGTGGGAAGTAATGAGATCAAGCCTGAACCTGCTTGTTGCCCGGAGCT 292
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 240 CTCGTACGTTCAAGTGGGAAGTAATGAGATCAAGCCTGAAGCTGCTTGTTGCCCGGAGCT 299
Query 293 TGCTGGTATGGTTCAAAGCTCGCCAGAATGTGTTTGTAATCTTCT-CGGCGGTGGCGCAT 351
|||||| ||||||||||| ||||| || ||||| ||||||||| | |||||| |||||||
Sbjct 300 TGCTGGGATGGTTCAAAGTTCGCCGGAGTGTGTCTGTAATCTT-TACGGCGGCGGCGCAT 358
Query 352 CGCCGCGTTTTGGAGTTAAGCTTGATAAACAGAGAGCTGAGCAACTTTCAACAATCTGTG 411
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 359 CGCCGCGGTTTGGAGTTAAGCTTGATAAACAGAGAGCTGAGCAACTTTCAACTATCTGTG 418
Query 412 GTGTGAAAGCTCCATCTCCTAGTTTGTGTTCAGTTCTGGGTTTTCCGACGATCTCTCCTG 471
||||||||||||||||||||||||||||||||||| | ||||||||||||||||| || |
Sbjct 419 GTGTGAAAGCTCCATCTCCTAGTTTGTGTTCAGTTTTAGGTTTTCCGACGATCTCGCCGG 478
Query 472 CCGGAAGTGAAGATTCATCTGCAGGTTCTGAAGGATCGGATAAAGATAAGAAAAATGGAG 531
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 479 CCGGAAGTGAAGATTCATCTTCAGGTTCTGAAGGATCGGATAAAGATAAGAAAAATGGAG 538
Query 532 CTATGACTACTAAAGATTTTAGAGTAGCTTTGAACTCCTTAGCCTTAATATTATTGTCCA 591
|||||||||||||| ||| | |||||||||||||||| ||||||||| ||||||||| ||
Sbjct 539 CTATGACTACTAAATATTGTGGAGTAGCTTTGAACTCATTAGCCTTACTATTATTGTTCA 598
Query 592 CGATTCTTTCTTTGTTTTGAGCATTACATGACTTCACTAGGTG-T---TGA--A-GCATA 644
|| |||||||||| || |||| ||||| || |||||||||| | ||| | |||||
Sbjct 599 CGTTTCTTTCTTTAAGTTAAGCAATACATAACCTCACTAGGTGATAGGTGATGAAGCATA 658
Query 645 TATTCTACTATCATCTC-TTTTT-GTGATTCATAGTACGAATCTCATGTGTGTTTCTTAT 702
|||| ||||||| |||| ||||| || |||||| ||||||||||||| ||||||||||||
Sbjct 659 TATTATACTATCTTCTCCTTTTTTGTAATTCATCGTACGAATCTCATATGTGTTTCTTAT 718
Query 703 GGATCGGAACTTGGATTAATATATTACAACTTTATATATAGTTTAGTGAGCTT 755
||| | |||||||| ||| | |||||||||||||||||||| |||||||
Sbjct 719 GGA----A-CTTGGATTC-TAT-T-ACAACTTTATATATAGTTTATTGAGCTT 763
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36670927310
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5