BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481601
Length=828
Score E
Sequences producing significant alignments: (Bits) Value
AT2G27140.1 | Symbols: | HSP20-like chaperones superfamily pro... 1212 0.0
> AT2G27140.1 | Symbols: | HSP20-like chaperones superfamily protein
| chr2:11598379-11599322 REVERSE LENGTH=850
Length=850
Score = 1212 bits (656), Expect = 0.0
Identities = 777/834 (93%), Gaps = 13/834 (2%)
Strand=Plus/Plus
Query 1 ACACAAAATCCTCTTATTCCAAATTCAAACCAAG-AAA--CTAAGAGATGGAGAGAATTT 57
||||||||||||||||||| | | |||||||||| ||| ||| ||||||| |||||||
Sbjct 13 ACACAAAATCCTCTTATTCTACA-TCAAACCAAGAAAATTATAAAAGATGGAAAGAATTT 71
Query 58 CTGATCATGCTAATGCTAATCGCATCTACGATGAATTCGAGCCACTCTCAAATTGGAAAA 117
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 72 CTGATCATGCTAATGCTAATCGCATCTACGATGAATTTGAGCCACTCTCAAATTGGAAAA 131
Query 118 CTGAACAAGGATTCGAAACTCTCACTGTTTACCTTCCAGGGTTTAGGAAAGAGCAGCTTA 177
||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||
Sbjct 132 CTGAACAAGGATTCGAAGCTCTCACTATTTACCTTCCAGGTTTTAGGAAAGAGCAGCTTA 191
Query 178 AGGTGCAAGTAACCACCACGAGGAAGCTGAGAGTGATGGGAGATCGTCCAGCAGGAGCCA 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 192 AGGTGCAAGTAACCACCACGAGGAAGCTGAGAGTGATGGGAGATCGTCCAGCAGGAGCCA 251
Query 238 ACAAATGGATCCGTTTCCGCAAAGAGTTTCCTATTCCTCCAAACATCGACGTTGACTCTG 297
||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
Sbjct 252 ACAAATGGATCCGTTTCCGCAAAGAGTTTCCTATTCCGCCAAACATCGACGTCGACTCCG 311
Query 298 TCTCTGCCAAATTCGAAGGTGCAAATCTCGTTGTGAGGCTTCCTAGATCCGAGCCAATGG 357
||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 312 TCTCTGCCAAATTCGAAGGCGCAAATCTCGTTGTGAGGCTTCCTAGAACCGAGCCAATGG 371
Query 358 GTAAACAAACTTCCCCTATAATTGGTACAGCCACAAAACCACCTCCAGTTCCTAAGGAAA 417
| |||||| |||| ||||| | ||||||||||||||||| |||||||||||||| ||||
Sbjct 372 GCAAACAACCTTCACCTAT--T-GGTACAGCCACAAAACCTCCTCCAGTTCCTAAAGAAA 428
Query 418 ATCCCAAGCTTCCTAGCCAGGCAGCAAAAGAGAAGGTCCAACCACCAGATGAAACAAGAG 477
| ||||| |||||||||| | |||| ||||| ||||||||||||||| | ||||||||||
Sbjct 429 ACCCCAACCTTCCTAGCCCGTCAGCGAAAGAAAAGGTCCAACCACCAAAGGAAACAAGAG 488
Query 478 AGAGA-GAAGCGGAACTAGAAAAACAGGCCGAGAAGATTCAATCGCCAAAGCCAGCAAGA 536
||| | ||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 489 AGA-ATGAAACGGAACTAGAAAAACAGGCCGAGAAGATTCAATCACCAAAGCCAGCAAGA 547
Query 537 GAGAATGAAGAAGCCCTTAACCAAGATTATAGAAGTAAAGTGAATGAATACAAGGAAAAT 596
||||| |||||||| |||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 548 GAGAACGAAGAAGCTCTTAACCAAGATTACAGAAGTAAAGTGAATGAATACAAGGAGAAT 607
Query 597 CTTGGAGGATATGTTGCACTGATGAAGAATAACAGAACAGCACTTACGGCTGGTGTGGTT 656
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 608 CTTGGAGGATATGTGGCACTGATGAAGAATAACAGAACAGCACTTACGGCTGGTGTGGTT 667
Query 657 GTTCCCGCGGCTGCGGTTCTGTTGCTCTCTCTTGGATTCTATGCCGGCCAAATGTTTACT 716
|||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 668 GTTCCCGCAGCTGCGGTTCTGTTGCTGTCTCTTGGATTCTATGCTGGCCAAATGTTTACT 727
Query 717 TCTTAATTCTTATTTACCTATTCGCAGGATTCTCAAAGGCAGATAAAATGTACTAAAACT 776
|||||||||||||||||||||| ||| |||||||||||| | |||||||||||||||| |
Sbjct 728 TCTTAATTCTTATTTACCTATTTGCATGATTCTCAAAGGAAAATAAAATGTACTAAAATT 787
Query 777 TGCATATAAAACAAATCAT-ATTAATAAACA-AACCACCCCTACATTaaaaaaa 828
||||||||||||||||||| || |||||||| ||| ||||| |||| |||||||
Sbjct 788 TGCATATAAAACAAATCATTAT-AATAAACATAAC-ACCCCAACATAAAAAAAA 839
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40338020041
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5