BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481613
Length=1200
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52990.1 | Symbols: | SNARE-like superfamily protein | chr5... 702 0.0
> AT5G52990.1 | Symbols: | SNARE-like superfamily protein | chr5:21483928-21485287
FORWARD LENGTH=1360
Length=1360
Score = 702 bits (380), Expect = 0.0
Identities = 447/477 (94%), Gaps = 14/477 (3%)
Strand=Plus/Plus
Query 581 GAGCGTAGCGAGAGAGAGAGTCGGAATCCGAGTATTGATTCATCTAAAGGAAGAAGAGCT 640
||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 692 GAGTGTAGC--GAGAGAGAGTCGAAATCCGAGTATTGATTCATCTAAAGGAAGAAGAGCT 749
Query 641 GCGTTGATGCCACTTTTGGGGAAGCCATTGATGGCGTTgaagaagaagaagaagaagaga 700
|| |||||||||||||||||||| ||||||| |||||| ||||||||||||||||
Sbjct 750 GCTTTGATGCCACTTTTGGGGAAACCATTGAAGGCGTT------GAAGAAGAAGAAGAGA 803
Query 701 TTGCATAATGAAGCAAAAGGACAAGATTCGTGTGAGGTTGGTTCGA-TCAAGGAGATATC 759
|||||||||||||||||||| |||||| |||||||||||||||| || ||||||||||
Sbjct 804 TTGCATAATGAAGCAAAAGGGGGAGATTCTTGTGAGGTTGGTTCGATTC-AGGAGATATC 862
Query 760 AGAGAAGAATGTTGATGTATGTGGGAATGGTAACAATGGAGTCTTACGCAAGGAACTGAG 819
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 863 AGAGAAGAATGTTGATTTATGTGGGAATGGTAATAATGGAGTCTTACGCAAGGAACTGAG 922
Query 820 AAATGGTTTGTTGAGTGATCATCATCATAGACAAAAGGCGAAACAGATATGGAAGAAACA 879
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 923 AAATGGTTTGTTGAGTGATCATCATCATAGACAAAAGGCGAAACAGATTTGGAAGAAACA 982
Query 880 TGTTTGGGTTGTGTTGATGTTTGATTTCTGCATCTGTGCTGTTTTATTTGGAATCTGGCT 939
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 983 TGTTTGGGTTGTGTTGATGTTTGATTTCTGCATCTGTGCTGTTTTGTTTGGAATTTGGCT 1042
Query 940 TTGGATTTGTGAAGGGTTTCAATGTATTCAAGGGTAAAAGTTATCATC-T--GTGTACAT 996
|||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||
Sbjct 1043 TTGGATTTGTGAAGGGTTTCAATGCATTCAAGGGTAAAAGTTATCATCATCTGTGTACAT 1102
Query 997 CTCCAAATTCATATTGTTTGAATCTGCATCAAAATTTGATCATT-GACATCtttttt 1052
||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 1103 CTCCAAATTCATATTCTTTGAATCTGCATCAAAATTTGATCATTTGACATCTTTTTT 1159
Score = 621 bits (336), Expect = 4e-177
Identities = 395/423 (93%), Gaps = 6/423 (1%)
Strand=Plus/Plus
Query 161 TTTT-GCTTCGAATCTCCATTGAAAAGGATGATTTCAAATCCAAGTTTATTGTCTTACAC 219
|||| |||||| ||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 234 TTTTCGCTTCG-ATCTCCATTGAAAAGGATGATTTCAAATCCAAGTTTATTATCGTACAC 292
Query 220 TTGCATTGCGAAAGGAACCGTAGTTCTCGCTGAGTTCGTTTCCAAGG-AAGAGCCAGGAA 278
|||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||
Sbjct 293 TTGCATTGCGAAAGGAACCGTAGTTCTCGCGGAGTTCGTTTC-AAGGCAAGAGCCAGGAA 351
Query 279 TCGAAGCTGTAGCTTTACGATGTATCGAGAACACGCCTCCACATCATTCAATGTTCTCTC 338
|||||||| ||||||||||||| ||||||||||||||||| |||||||||||||| ||||
Sbjct 352 TCGAAGCTATAGCTTTACGATGCATCGAGAACACGCCTCCTCATCATTCAATGTTTTCTC 411
Query 339 ATACAGTTCACAAGAAGACGTACACATTCGCAATCGATGATGATTCGTTTGTTTATTTCG 398
|||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||
Sbjct 412 ATACAGTTCACAAGAAGACGTATACATTCGCAATCGACGATGATTCCTTTGTTTATTTCT 471
Query 399 CGATTT-TGGATGAAAGTATGGAGAAACCTGAATCATTCTGGGTTTTGAATCGTCTGAGA 457
|||||| || ||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 472 CGATTTCTG-ATGAATCCATGGAGAAACCTGAATCATTCTGGGTTTTGAATCGTTTGAGA 530
Query 458 TCAGCTATTGAAGATCTGATTAGAGACGGTGGATCTGATGTTGAAACGTTGATTAATCCT 517
|||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||
Sbjct 531 TCAGCTATTGAAGATCTGATTAAAGACGGTGGATCTGATGTTGAGACGCTGATTAATCCT 590
Query 518 GTTTCGCATTGTCTTCAATCAAAGCTTGATCCAGTTTTCGCGGAGATTGTTGGTGTTGTT 577
||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 591 GTTTCTCATTGTCTTCAATTGAAGCTTGATCCAGTTTTCGCTGAGATTGTTGGTGTTGTT 650
Query 578 GAT 580
|||
Sbjct 651 GAT 653
Score = 172 bits (93), Expect = 5e-42
Identities = 116/126 (92%), Gaps = 5/126 (4%)
Strand=Plus/Plus
Query 1076 TTTTATTTTTAAAGTCACAAAAAGTGTTGTTTCCAGGAGG-AAACTAGGGTATATATAGG 1134
||| |||||||||||| ||||||||||||||||||||||| ||||||||| |||||
Sbjct 1235 TTTGATTTTTAAAGTCGCAAAAAGTGTTGTTTCCAGGAGGAAAACTAGGG----TATAGA 1290
Query 1135 TTGAATCCTGGTTTACATGTTAGTGATGTTGTTCATTGTACTTTGGAAGTTAAATCATTC 1194
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 1291 TTGAATCCTGGTTTACATGTTAATGATGTTGTTAATTGTACTTTGGAAGTTAAATCATTC 1350
Query 1195 ACAAGC 1200
||||||
Sbjct 1351 ACAAGC 1356
Score = 128 bits (69), Expect = 1e-28
Identities = 86/94 (91%), Gaps = 2/94 (2%)
Strand=Plus/Plus
Query 1 TTTCGTCTTCTCCAATAATGCTCTCCATTTCTGTTATTTTCCCTAGAAAATTCCGCAAAC 60
|||||||||||||||||||| |||||||||||||||||||||||||||| || |||||||
Sbjct 1 TTTCGTCTTCTCCAATAATGATCTCCATTTCTGTTATTTTCCCTAGAAATTTTCGCAAAC 60
Query 61 CCTagagagagagagaAA--TCAAAATCTCCATT 92
|||| | ||||||||||| | ||||||||||||
Sbjct 61 CCTAAAAAGAGAGAGAAACATAAAAATCTCCATT 94
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58935439830
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5