BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481620
Length=2646
Score E
Sequences producing significant alignments: (Bits) Value
AT2G27228.1 | Symbols: CPuORF6 | conserved peptide upstream ope... 3731 0.0
AT2G27230.1 | Symbols: LHW | transcription factor-related | chr... 3334 0.0
> AT2G27228.1 | Symbols: CPuORF6 | conserved peptide upstream open
reading frame 6 | chr2:11650358-11654143 FORWARD LENGTH=2706
Length=2706
Score = 3731 bits (2020), Expect = 0.0
Identities = 2442/2632 (93%), Gaps = 84/2632 (3%)
Strand=Plus/Plus
Query 56 TTTTATCGATGGCTGGTATTACTGGAATCTTAAAGCTTGAAGCTTGGAGCATCTTGTGAA 115
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 99 TTTTATCAATGGCTGGTGTTACTGGAATCTTAAAGCTTGAAGCTTGGAGCATCTTGTGAA 158
Query 116 CAAGA--AAC-Agtttctt-tcgtttttcttttct-ggtttttgagttttttttttctct 170
|||| ||| |||||||| | |||||||||||| || ||||||| |||||||||||||
Sbjct 159 GAAGATTAACTAGTTTCTTGT-ATTTTTCTTTTCTGGGGTTTTGAG-TTTTTTTTTCTCT 216
Query 171 tctttATTACCGGAAGTAATGGCATGTCGGAGTATGATCGCTTTTAGTTTAGATCCTGAA 230
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 217 TCCTTATTACCGGAAGTAATGGCATGTCGGAGTATGATCGCTTTTAGTTTAGATCCTGAA 276
Query 231 AGAAAACAAAGTGGAGGACTTAGAACAAAACAAGCTGGAAGAGGATCTTGCCGTGGAAGT 290
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 277 AGAAAACAAAGTGGAGGACTTAGGACAAAACAAGCTGGAAGAGGATCTTGCCGTGGAAGT 336
Query 291 TAGTCTTTGTTCAAATCCATTTTCCTCTCAATCTTCTTAAAGAATTTTGAAATTGCACTG 350
||||||||||||||||||| || | || | ||||||||||||||||||||||||||
Sbjct 337 TAGTCTTTGTTCAAATCCA--TT--T-TC---C-TCTTAAAGAATTTTGAAATTGCACTG 387
Query 351 TTGCAAGTGAAAAAGATTGTTCTTGTTGGAGCTT-----------AA-AG-AAGAGAAAA 397
||||||||||||||| |||||||||||||||||| || || |||||||||
Sbjct 388 TTGCAAGTGAAAAAGTTTGTTCTTGTTGGAGCTTAAAGAAGAGAGAAGAGAAAGAGAAAA 447
Query 398 GCTATGGGAGTTTTACTAAGAGAAGCTTTGAGGTCTATGTGTGTTAATAATCAATGGTCT 457
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 448 GCTATGGGAGTTTTACTAAGAGAAGCTTTAAGGTCTATGTGTGTTAATAATCAATGGTCT 507
Query 458 TATGCTGTTTTCTGGAAAATTGGCTGTCAAAATTCTAGCTTGTTGATTTGGGAGGAATGC 517
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 508 TATGCTGTTTTCTGGAAAATTGGCTGTCAAAATTCTAGCTTGTTGATTTGGGAGGAATGT 567
Query 518 TATAATGAAACTGCATCGAGCTCGAATCCTCGAAGACTTTGTGGACTCGGTGTTGATACA 577
|| |||||||| | |||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 568 TACAATGAAACCGAATCGAGCTCGAATCCTAGAAGACTTTGTGGACTTGGTGTTGATACA 627
Query 578 CAAGGGAATGAGAAAGTTCAGTTGCTTACGAACCGAATGATGTTGAACAATCGAATCATT 637
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 628 CAAGGGAATGAGAAAGTTCAGTTGCTTACAAACCGAATGATGTTGAACAATCGAATCATT 687
Query 638 TTGGTTGGTGAAGGACTAGTTGGCCGAGCTGCATTTACTGGACATCATCAATGGATTCTA 697
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 688 TTGGTAGGTGAAGGTCTAGTTGGCCGAGCTGCATTTACTGGACATCATCAATGGATTCTA 747
Query 698 GCTAATAGTTTCAACCGCGACGTTCATCCACCCGAGGTTATTAATGAGATGCTTCTCCAA 757
||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 748 GCTAACAGTTTTAACCGCGATGTTCATCCACCCGAGGTTATTAATGAGATGCTTCTCCAA 807
Query 758 TTCTCTGCTGGTATTCAGACTGTTGCAGTTTTCCCGGTTGTTCCTCACGGTGTTGTTCAA 817
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 808 TTCTCTGCTGGTATTCAGACTGTTGCAGTTTTTCCGGTTGTTCCTCACGGTGTTGTTCAG 867
Query 818 CTCGGTTCCTCTCTGCCTATTATGGAGAATTTGGGGTTTGTGAATGACGTGAAGGGTCTT 877
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 868 CTCGGTTCCTCTCTGCCTATTATGGAGAACTTGGGGTTTGTGAATGACGTGAAGGGTCTT 927
Query 878 ATCCTGCAACTCGGATGTGTTCCCGGAGCGCTCTTATCTGAAAACTACAGAACATATGAA 937
|||||||| |||||||||||||| || || ||||||||||||||||||||||||||||||
Sbjct 928 ATCCTGCAGCTCGGATGTGTTCCGGGGGCTCTCTTATCTGAAAACTACAGAACATATGAA 987
Query 938 CCTGCTGCTGATTTTATTGGAGTGCCAGTGTCTCGGATAATACCTTCTCAAGGACACAAG 997
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 988 CCTGCTGCTGATTTTATTGGAGTGCCAGTGTCTCGGATAATACCTTCTCAAGGACATAAG 1047
Query 998 ATCCTCCAATCTTCGGCTTTCGTAGCTGAAACTAGCAAACAACACTTCAACTCTACTGGA 1057
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1048 ATCCTCCAATCTTCGGCTTTCGTAGCTGAAACTAGCAAACAACATTTCAACTCCACTGGA 1107
Query 1058 TCATCAGATCATCAAAATGATCAAATGGTTGAAGAAGCTCCGTGTAATCTCGTGGATGAA 1117
||||||| ||| ||||||||||||||||| |||| |||||||| |||||||||
Sbjct 1108 TCATCAG---ATC------ATCAAATGGTTGAAGAATCTCCCTGTAATCTTGTGGATGAA 1158
Query 1118 CAGATCAAGCAAGGAGGATGGCAAAACACAACGGGTTTTCTAACAGCTGGGGAAGTTGCA 1177
| || | ||||||||||||||| |||||| || |||||||||||||| |||||||||
Sbjct 1159 C--AT---G-AAGGAGGATGGCAAAGCACAACAGGATTTCTAACAGCTGGAGAAGTTGCA 1212
Query 1178 GTACCTTCAAATCCAGATGCGTGGCTGAATCAAAACTTCTCTTGTATGTCTAATGTGGAT 1237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1213 GTACCTTCAAATCCAGATGCGTGGCTGAATCAAAACTTCTCTTGTATGTCTAATGTGGAT 1272
Query 1238 GGAGC--AG-AGCAACAAATCCCATGCGAAGACATCAGTTCCAAACACTCGCTTGGAAGC 1294
| ||| || |||||||||||||||| |||||||||||||| |||| |||||||||||||
Sbjct 1273 GCAGCAGAGCAGCAACAAATCCCATGTGAAGACATCAGTTCGAAACGCTCGCTTGGAAGC 1332
Query 1295 GATGACTTGTTTGATATGTTGGGTTTGGATGATAAGAACAAAGGTTGTGACAACAGTTGG 1354
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 GACGACTTGTTTGATATGTTGGGTTTGGATGATAAGAACAAAGGTTGTGACAACAGTTGG 1392
Query 1355 GGTGTTTCGCAGATGAGAACGGAAGTACTCACTAGGGAGTTATCCGACTTTCGGATCATT 1414
|| ||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1393 GGAGTTTCACAGATGAGAACAGAAGTACTCACTAGAGAGTTATCCGACTTTCGGATCATT 1452
Query 1415 CAAGATATGGACCCTGAGTTTGGTTCTTCGGGGTATGAACTTTCAGGAACAGATCATCTG 1474
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1453 CAAGAAATGGACCCTGAGTTCGGTTCTTCGGGGTATGAACTTTCAGGAACAGATCATCTG 1512
Query 1475 TTAGATGCCGTGGTCTCGGGTGCTTGCTCCTCCACAAAGCAGATCTCGGACGAAACATCT 1534
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1513 TTAGATGCCGTGGTCTCGGGTGCTTGCTCCTCCACAAAGCAGATCTCAGACGAAACTTCC 1572
Query 1535 GAGTCCTGCAAAACCACTTTGACTAAAGTTAGTAATTCTTCGGTTACCACGCCATCTCAC 1594
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1573 GAGTCCTGCAAAACCACCTTGACTAAAGTTAGTAATTCTTCGGTTACCACGCCGTCTCAC 1632
Query 1595 AGTAGCCCTCAAGGTAACCAGTTATTTGAGAA-ACAACACGGGCAACCAGTGGGGCCATC 1653
|||||||||||||||| ||||||||||||||| | |||| ||||||||| ||||||||||
Sbjct 1633 AGTAGCCCTCAAGGTAGCCAGTTATTTGAGAAGA-AACATGGGCAACCATTGGGGCCATC 1691
Query 1654 ATCGGTCTACGGGTCTCAGATCAGTTCTTGGGTTGAACAAGCACACAGCTTGAAGCGCGA 1713
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||
Sbjct 1692 ATCGGTCTACGGGTCTCAGATAAGTTCTTGGGTTGAACAAGCGCACAGCTTGAAGCGTGA 1751
Query 1714 GGGCAGTCCAAGGATGATGAATAACAATAAGAACGAAACTGCAAAACCGGCTAATAATCG 1773
|||||||||||||||| || ||| ||||| ||||||||||||||||||||||| ||
Sbjct 1752 GGGCAGTCCAAGGATGGTG---AAC---AAGAATGAAACTGCAAAACCGGCTAATAACCG 1805
Query 1774 TAAAAGACTTAAACCAGGAGAGAACCCAAGACCAAGGCCTAAAGATCGCCAGATGATCCA 1833
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1806 GAAAAGGCTTAAACCAGGAGAGAACCCAAGACCAAGGCCTAAAGATCGCCAAATGATCCA 1865
Query 1834 AGATCGTGTCAAGGAGTTGCGTGAAATCATACCAAACGGAGCAAAATGTAGCATTGATGC 1893
|||||||||||| ||| |||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1866 AGATCGTGTCAAAGAGCTGCGTGAAATAATACCAAACGGTGCAAAATGTAGCATTGATGC 1925
Query 1894 ACTCCTGGAACGTACAATCAAGCACATGCTCTTCTTGCAAAATGTCTCGAAGCACTCTGA 1953
|||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1926 ACTCCTTGAACGTACAATCAAGCACATGCTCTTCTTGCAAAATGTCTCCAAGCATTCTGA 1985
Query 1954 TAAGCTGAAGCAAACTGGGGAATCCAAGATTATGAAAGAGGACGGTGGAGGAGCAACATG 2013
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1986 TAAGCTGAAGCAAACCGGGGAATCCAAGATTATGAAAGAGGACGGTGGAGGAGCAACATG 2045
Query 2014 GGCTTTCGAAGTAGGGTCAAAGTCTATGGTGTGTCCAATTGTCGTAGAGGATATAAACCC 2073
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2046 GGCTTTCGAAGTAGGGTCAAAGTCTATGGTGTGTCCAATTGTCGTAGAAGATATAAACCC 2105
Query 2074 GCCTCGCATTTTCCAAGTTGAGATGTTGTGTGAACAACGAGGATTCTTCCTAGAAATCGC 2133
|||||||||||||||||| |||||||| || || |||||||||||||| |||||||||||
Sbjct 2106 GCCTCGCATTTTCCAAGTCGAGATGTTATGCGAGCAACGAGGATTCTTTCTAGAAATCGC 2165
Query 2134 GGATTGGATCAGGAGCTTAGGAATGACGATATTGAAGGGTGTCATCGAAACTCGACTTGA 2193
||||||||||| |||||||| | ||||| |||||||| ||||||||||||||| | ||
Sbjct 2166 AGATTGGATCAGAAGCTTAGGGTTAACGATCTTGAAGGGAGTCATCGAAACTCGAGTAGA 2225
Query 2194 CAAGATATGGGCTCGCTTCACTGTTGAGGCGAATCGAGACATGACGAGAATGGAAATATT 2253
|||||| ||||||||||||||||||||||||| ||| ||| ||||||| |||||||||||
Sbjct 2226 CAAGATTTGGGCTCGCTTCACTGTTGAGGCGAGTCGCGACGTGACGAGGATGGAAATATT 2285
Query 2254 CATGCAACTGGTGAATATTTTGGAGCAGACAATGAAATGTGGAGGAAACTCTAAGACTAT 2313
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2286 CATGCAACTAGTGAATATTTTGGAGCAGACAATGAAATGTGGAGGAAACTCTAAGACTAT 2345
Query 2314 TTTGGATGGTATCAAAGCTACAATGCCTTTACCGGTTACTGGTGGCTGTTCAATGTAATG 2373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2346 TTTGGATGGTATCAAAGCTACAATGCCTTTACCGGTTACTGGTGGCTGTTCAATGTAATG 2405
Query 2374 ACACAAATTGTTAACCGTACCGGATTGCTCCGGTTTTAATAAACCGGTATCATTAAA-GC 2432
||||||||| || ||||||||||||||||||||||| |||||||||| | ||||| ||
Sbjct 2406 ACACAAATTATTGACCGTACCGGATTGCTCCGGTTT-AATAAACCGGGCTGGTTAAAAGC 2464
Query 2433 TTGATTCATATAGAGGTTACGAGCGGACCGCTCTCAAGGATTT-AGGCTCGCTATGACTA 2491
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2465 TTGATTCATATAGAGGTTACGAGCGGACCGCTCTCAAGGATTTTAGGCTCGCTATGACTA 2524
Query 2492 ACTTAAAAAGTCAGTCTAAAACAGAGATGATGATTTTTAAGTGt-ttttttttt-t---- 2545
||| |||||||||||||||| ||||||||||||||||||||||| ||||||||| |
Sbjct 2525 ACT-AAAAAGTCAGTCTAAACCAGAGATGATGATTTTTAAGTGTGTTTTTTTTTCTCAAC 2583
Query 2546 t----gt-----acatta-t-gcgaattttcatttgtgtggaatttttactttttaaatt 2594
| || |||||| | ||||||||||||||||||||||||||| | || ||
Sbjct 2584 TTTATGTTTTGTACATTAGTTGCGAATTTTCATTTGTGTGGAATTTTT--T----AA-TT 2636
Query 2595 ttaattcagttttggactttgtaaaatttttagttaaattgtctaaaatTAT 2646
|||||||||||||||| || |||||| |||||||||||||| |||||||||
Sbjct 2637 TTAATTCAGTTTTGGAGTT-GTAAAAAATTTAGTTAAATTGTTTAAAATTAT 2687
> AT2G27230.1 | Symbols: LHW | transcription factor-related | chr2:11650358-11654116
FORWARD LENGTH=2641
Length=2641
Score = 3334 bits (1805), Expect = 0.0
Identities = 2174/2341 (93%), Gaps = 69/2341 (3%)
Strand=Plus/Plus
Query 332 GAATTTTGAAATTGCACTGTTGCAAGTGAAAAAGATTGTTCTTGTTGGAGCTT------- 384
||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 332 GAA-TTTGAAATTGCACTGTTGCAAGTGAAAAAGTTTGTTCTTGTTGGAGCTTAAAGAAG 390
Query 385 ----AA-AG-AAGAGAAAAGCTATGGGAGTTTTACTAAGAGAAGCTTTGAGGTCTATGTG 438
|| || |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 391 AGAGAAGAGAAAGAGAAAAGCTATGGGAGTTTTACTAAGAGAAGCTTTAAGGTCTATGTG 450
Query 439 TGTTAATAATCAATGGTCTTATGCTGTTTTCTGGAAAATTGGCTGTCAAAATTCTAGCTT 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 451 TGTTAATAATCAATGGTCTTATGCTGTTTTCTGGAAAATTGGCTGTCAAAATTCTAGCTT 510
Query 499 GTTGATTTGGGAGGAATGCTATAATGAAACTGCATCGAGCTCGAATCCTCGAAGACTTTG 558
|||||||||||||||||| || |||||||| | |||||||||||||||| ||||||||||
Sbjct 511 GTTGATTTGGGAGGAATGTTACAATGAAACCGAATCGAGCTCGAATCCTAGAAGACTTTG 570
Query 559 TGGACTCGGTGTTGATACACAAGGGAATGAGAAAGTTCAGTTGCTTACGAACCGAATGAT 618
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 571 TGGACTTGGTGTTGATACACAAGGGAATGAGAAAGTTCAGTTGCTTACAAACCGAATGAT 630
Query 619 GTTGAACAATCGAATCATTTTGGTTGGTGAAGGACTAGTTGGCCGAGCTGCATTTACTGG 678
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 631 GTTGAACAATCGAATCATTTTGGTAGGTGAAGGTCTAGTTGGCCGAGCTGCATTTACTGG 690
Query 679 ACATCATCAATGGATTCTAGCTAATAGTTTCAACCGCGACGTTCATCCACCCGAGGTTAT 738
|||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||
Sbjct 691 ACATCATCAATGGATTCTAGCTAACAGTTTTAACCGCGATGTTCATCCACCCGAGGTTAT 750
Query 739 TAATGAGATGCTTCTCCAATTCTCTGCTGGTATTCAGACTGTTGCAGTTTTCCCGGTTGT 798
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 751 TAATGAGATGCTTCTCCAATTCTCTGCTGGTATTCAGACTGTTGCAGTTTTTCCGGTTGT 810
Query 799 TCCTCACGGTGTTGTTCAACTCGGTTCCTCTCTGCCTATTATGGAGAATTTGGGGTTTGT 858
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 811 TCCTCACGGTGTTGTTCAGCTCGGTTCCTCTCTGCCTATTATGGAGAACTTGGGGTTTGT 870
Query 859 GAATGACGTGAAGGGTCTTATCCTGCAACTCGGATGTGTTCCCGGAGCGCTCTTATCTGA 918
||||||||||||||||||||||||||| |||||||||||||| || || |||||||||||
Sbjct 871 GAATGACGTGAAGGGTCTTATCCTGCAGCTCGGATGTGTTCCGGGGGCTCTCTTATCTGA 930
Query 919 AAACTACAGAACATATGAACCTGCTGCTGATTTTATTGGAGTGCCAGTGTCTCGGATAAT 978
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 931 AAACTACAGAACATATGAACCTGCTGCTGATTTTATTGGAGTGCCAGTGTCTCGGATAAT 990
Query 979 ACCTTCTCAAGGACACAAGATCCTCCAATCTTCGGCTTTCGTAGCTGAAACTAGCAAACA 1038
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 991 ACCTTCTCAAGGACATAAGATCCTCCAATCTTCGGCTTTCGTAGCTGAAACTAGCAAACA 1050
Query 1039 ACACTTCAACTCTACTGGATCATCAGATCATCAAAATGATCAAATGGTTGAAGAAGCTCC 1098
||| |||||||| ||||||||||||| ||| ||||||||||||||||| ||||
Sbjct 1051 ACATTTCAACTCCACTGGATCATCAG---ATC------ATCAAATGGTTGAAGAATCTCC 1101
Query 1099 GTGTAATCTCGTGGATGAACAGATCAAGCAAGGAGGATGGCAAAACACAACGGGTTTTCT 1158
|||||||| |||||||||| || | ||||||||||||||| |||||| || |||||
Sbjct 1102 CTGTAATCTTGTGGATGAAC--AT---G-AAGGAGGATGGCAAAGCACAACAGGATTTCT 1155
Query 1159 AACAGCTGGGGAAGTTGCAGTACCTTCAAATCCAGATGCGTGGCTGAATCAAAACTTCTC 1218
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1156 AACAGCTGGAGAAGTTGCAGTACCTTCAAATCCAGATGCGTGGCTGAATCAAAACTTCTC 1215
Query 1219 TTGTATGTCTAATGTGGATGGAGC--AG-AGCAACAAATCCCATGCGAAGACATCAGTTC 1275
|||||||||||||||||||| ||| || |||||||||||||||| ||||||||||||||
Sbjct 1216 TTGTATGTCTAATGTGGATGCAGCAGAGCAGCAACAAATCCCATGTGAAGACATCAGTTC 1275
Query 1276 CAAACACTCGCTTGGAAGCGATGACTTGTTTGATATGTTGGGTTTGGATGATAAGAACAA 1335
|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1276 GAAACGCTCGCTTGGAAGCGACGACTTGTTTGATATGTTGGGTTTGGATGATAAGAACAA 1335
Query 1336 AGGTTGTGACAACAGTTGGGGTGTTTCGCAGATGAGAACGGAAGTACTCACTAGGGAGTT 1395
||||||||||||||||||||| ||||| ||||||||||| |||||||||||||| |||||
Sbjct 1336 AGGTTGTGACAACAGTTGGGGAGTTTCACAGATGAGAACAGAAGTACTCACTAGAGAGTT 1395
Query 1396 ATCCGACTTTCGGATCATTCAAGATATGGACCCTGAGTTTGGTTCTTCGGGGTATGAACT 1455
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1396 ATCCGACTTTCGGATCATTCAAGAAATGGACCCTGAGTTCGGTTCTTCGGGGTATGAACT 1455
Query 1456 TTCAGGAACAGATCATCTGTTAGATGCCGTGGTCTCGGGTGCTTGCTCCTCCACAAAGCA 1515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1456 TTCAGGAACAGATCATCTGTTAGATGCCGTGGTCTCGGGTGCTTGCTCCTCCACAAAGCA 1515
Query 1516 GATCTCGGACGAAACATCTGAGTCCTGCAAAACCACTTTGACTAAAGTTAGTAATTCTTC 1575
|||||| |||||||| || ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1516 GATCTCAGACGAAACTTCCGAGTCCTGCAAAACCACCTTGACTAAAGTTAGTAATTCTTC 1575
Query 1576 GGTTACCACGCCATCTCACAGTAGCCCTCAAGGTAACCAGTTATTTGAGAA-ACAACACG 1634
|||||||||||| |||||||||||||||||||||| ||||||||||||||| | |||| |
Sbjct 1576 GGTTACCACGCCGTCTCACAGTAGCCCTCAAGGTAGCCAGTTATTTGAGAAGA-AACATG 1634
Query 1635 GGCAACCAGTGGGGCCATCATCGGTCTACGGGTCTCAGATCAGTTCTTGGGTTGAACAAG 1694
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1635 GGCAACCATTGGGGCCATCATCGGTCTACGGGTCTCAGATAAGTTCTTGGGTTGAACAAG 1694
Query 1695 CACACAGCTTGAAGCGCGAGGGCAGTCCAAGGATGATGAATAACAATAAGAACGAAACTG 1754
| |||||||||||||| |||||||||||||||||| || ||| ||||| |||||||
Sbjct 1695 CGCACAGCTTGAAGCGTGAGGGCAGTCCAAGGATGGTG---AAC---AAGAATGAAACTG 1748
Query 1755 CAAAACCGGCTAATAATCGTAAAAGACTTAAACCAGGAGAGAACCCAAGACCAAGGCCTA 1814
|||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1749 CAAAACCGGCTAATAACCGGAAAAGGCTTAAACCAGGAGAGAACCCAAGACCAAGGCCTA 1808
Query 1815 AAGATCGCCAGATGATCCAAGATCGTGTCAAGGAGTTGCGTGAAATCATACCAAACGGAG 1874
|||||||||| |||||||||||||||||||| ||| |||||||||| ||||||||||| |
Sbjct 1809 AAGATCGCCAAATGATCCAAGATCGTGTCAAAGAGCTGCGTGAAATAATACCAAACGGTG 1868
Query 1875 CAAAATGTAGCATTGATGCACTCCTGGAACGTACAATCAAGCACATGCTCTTCTTGCAAA 1934
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1869 CAAAATGTAGCATTGATGCACTCCTTGAACGTACAATCAAGCACATGCTCTTCTTGCAAA 1928
Query 1935 ATGTCTCGAAGCACTCTGATAAGCTGAAGCAAACTGGGGAATCCAAGATTATGAAAGAGG 1994
||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1929 ATGTCTCCAAGCATTCTGATAAGCTGAAGCAAACCGGGGAATCCAAGATTATGAAAGAGG 1988
Query 1995 ACGGTGGAGGAGCAACATGGGCTTTCGAAGTAGGGTCAAAGTCTATGGTGTGTCCAATTG 2054
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1989 ACGGTGGAGGAGCAACATGGGCTTTCGAAGTAGGGTCAAAGTCTATGGTGTGTCCAATTG 2048
Query 2055 TCGTAGAGGATATAAACCCGCCTCGCATTTTCCAAGTTGAGATGTTGTGTGAACAACGAG 2114
||||||| ||||||||||||||||||||||||||||| |||||||| || || |||||||
Sbjct 2049 TCGTAGAAGATATAAACCCGCCTCGCATTTTCCAAGTCGAGATGTTATGCGAGCAACGAG 2108
Query 2115 GATTCTTCCTAGAAATCGCGGATTGGATCAGGAGCTTAGGAATGACGATATTGAAGGGTG 2174
||||||| ||||||||||| ||||||||||| |||||||| | ||||| |||||||| |
Sbjct 2109 GATTCTTTCTAGAAATCGCAGATTGGATCAGAAGCTTAGGGTTAACGATCTTGAAGGGAG 2168
Query 2175 TCATCGAAACTCGACTTGACAAGATATGGGCTCGCTTCACTGTTGAGGCGAATCGAGACA 2234
|||||||||||||| | |||||||| ||||||||||||||||||||||||| ||| |||
Sbjct 2169 TCATCGAAACTCGAGTAGACAAGATTTGGGCTCGCTTCACTGTTGAGGCGAGTCGCGACG 2228
Query 2235 TGACGAGAATGGAAATATTCATGCAACTGGTGAATATTTTGGAGCAGACAATGAAATGTG 2294
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2229 TGACGAGGATGGAAATATTCATGCAACTAGTGAATATTTTGGAGCAGACAATGAAATGTG 2288
Query 2295 GAGGAAACTCTAAGACTATTTTGGATGGTATCAAAGCTACAATGCCTTTACCGGTTACTG 2354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2289 GAGGAAACTCTAAGACTATTTTGGATGGTATCAAAGCTACAATGCCTTTACCGGTTACTG 2348
Query 2355 GTGGCTGTTCAATGTAATGACACAAATTGTTAACCGTACCGGATTGCTCCGGTTTTAATA 2414
|||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||
Sbjct 2349 GTGGCTGTTCAATGTAATGACACAAATTATTGACCGTACCGGATTGCTCCGGTTT-AATA 2407
Query 2415 AACCGGTATCATTAAA-GCTTGATTCATATAGAGGTTACGAGCGGACCGCTCTCAAGGAT 2473
|||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2408 AACCGGGCTGGTTAAAAGCTTGATTCATATAGAGGTTACGAGCGGACCGCTCTCAAGGAT 2467
Query 2474 TT-AGGCTCGCTATGACTAACTTAAAAAGTCAGTCTAAAACAGAGATGATGATTTTTAAG 2532
|| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 2468 TTTAGGCTCGCTATGACTAACT-AAAAAGTCAGTCTAAACCAGAGATGATGATTTTTAAG 2526
Query 2533 TGt-ttttttttt-t----t----gt-----acatta-t-gcgaattttcatttgtgtgg 2575
||| ||||||||| | | || |||||| | ||||||||||||||||||||
Sbjct 2527 TGTGTTTTTTTTTCTCAACTTTATGTTTTGTACATTAGTTGCGAATTTTCATTTGTGTGG 2586
Query 2576 aatttttactttttaaattttaattcagttttggactttgtaaaatttttagttaaattg 2635
||||||| | || |||||||||||||||||| || |||||| |||||||||||||
Sbjct 2587 AATTTTT--T----AA-TTTTAATTCAGTTTTGGAGTT-GTAAAAAATTTAGTTAAATTG 2638
Query 2636 t 2636
|
Sbjct 2639 T 2639
Score = 355 bits (192), Expect = 1e-96
Identities = 224/238 (94%), Gaps = 7/238 (3%)
Strand=Plus/Plus
Query 56 TTTTATCGATGGCTGGTATTACTGGAATCTTAAAGCTTGAAGCTTGGAGCATCTTGTGAA 115
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 99 TTTTATCAATGGCTGGTGTTACTGGAATCTTAAAGCTTGAAGCTTGGAGCATCTTGTGAA 158
Query 116 CAAGA--AAC-Agtttctt-tcgtttttcttttct-ggtttttgagttttttttttctct 170
|||| ||| |||||||| | |||||||||||| || ||||||| |||||||||||||
Sbjct 159 GAAGATTAACTAGTTTCTTGT-ATTTTTCTTTTCTGGGGTTTTGAG-TTTTTTTTTCTCT 216
Query 171 tctttATTACCGGAAGTAATGGCATGTCGGAGTATGATCGCTTTTAGTTTAGATCCTGAA 230
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 217 TCCTTATTACCGGAAGTAATGGCATGTCGGAGTATGATCGCTTTTAGTTTAGATCCTGAA 276
Query 231 AGAAAACAAAGTGGAGGACTTAGAACAAAACAAGCTGGAAGAGGATCTTGCCGTGGAA 288
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 277 AGAAAACAAAGTGGAGGACTTAGGACAAAACAAGCTGGAAGAGGATCTTGCCGTGGAA 334
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 131387223717
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5