BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481623
Length=865
Score E
Sequences producing significant alignments: (Bits) Value
AT2G27260.1 | Symbols: | Late embryogenesis abundant (LEA) hyd... 1190 0.0
> AT2G27260.1 | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family | chr2:11669655-11670644
FORWARD LENGTH=990
Length=990
Score = 1190 bits (644), Expect = 0.0
Identities = 759/812 (93%), Gaps = 18/812 (2%)
Strand=Plus/Plus
Query 59 CAAAAAACTCAAATCAAAAGCTATGCAAGATccaccacgacccgctaccggttacccata 118
||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 93 CAAAAAAAACAAATCAAAAGCTATGCAAGATCCATCACGACCCGCTACAGGTTACCCATA 152
Query 119 cccatacccataccc-aaacc-c-acaacaaccaccacccaccaacggttacccaaaccc 175
||||||||||||||| || || | |||||||| ||||||||||||||| |||||||||||
Sbjct 153 CCCATACCCATACCCGAATCCACAACAACAACAACCACCCACCAACGGGTACCCAAACCC 212
Query 176 cgccaccggaaccgcttacccctaccaaaaccacAACCCATACTACGCACCACCTCAACC 235
|||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 213 CGCCGCCGGAACCGCTTACCCCTACCAAAACCACAACCCATACTACGCGCCA---CAACC 269
Query 236 AAACCCACGCGCCGTCATAATCCGCCGTCTCTTCATCGTCTTCATGACATTCCTCCTAAT 295
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 270 AAACCCACGCGCCGTCATAATCCGCCGTCTCTTCATCGTCTTCACAACATTCCTCCTACT 329
Query 296 CCTAGGTCTAATCCTCTTCATCTTCTTCCTAATCGTTCGTCCTCAATTACCAGACGTTTA 355
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 330 CCTAGGTCTAATCCTCTTCATCTTCTTCCTAATCGTTCGTCCTCAACTACCAGACGTTAA 389
Query 356 CCTAAACTCACTCTCCGTCTCCAATTTCAACGTCTCCAACAATCAAGTCTCTGGTAAATG 415
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 390 CCTAAACTCACTCTCCGTCTCCAATTTCAATGTCTCCAACAATCAAGTCTCTGGTAAATG 449
Query 416 GGATCTTCAAGTCCAATTTCGAAACCCTAATTCAAAGATGTCACTTCACTACGATG-CTG 474
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 450 GGATCTTCAACTCCAATTTCGAAACCCTAATTCAAAGATGTCACTTCACTACGA-GACTG 508
Query 475 CTCTTTGTGCTATGTATTACAATCGTGTTTCTCTATCTGAGACTAGGTTACAACCGTTTG 534
||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 509 CTCTTTGCGCTATGTATTACAATCGTGTCTCTCTATCCGAGACTAGGTTACAACCGTTTG 568
Query 535 ATCAAGGAAAGAAAGATCAAACGGTGGTTAATGCGACTCTCTCTGTTTCTGGTACTTATG 594
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 569 ATCAAGGGAAGAAAGATCAAACGGTGGTTAATGCGACTCTCTCTGTTTCTGGTACTTATG 628
Query 595 TTGATGGAAGATTAGCTGATTCTATTGGGAAAGAGAGAAGTGTTACAGGAAGTGTTGAGT 654
|||||||| | || | |||||||||||| |||||||||||||||| ||||| ||||||||
Sbjct 629 TTGATGGACGTTTGGTTGATTCTATTGGTAAAGAGAGAAGTGTTAAAGGAAATGTTGAGT 688
Query 655 TTGATTTGAGGATGATTTCTTATGTTACGTTTCGATACGGTGCGTTTCGGAGGCGGAGAT 714
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 689 TTGATTTGAGGATGATTTCTTATGTTACGTTTCGATACGGTGCGTTTCGGAGGAGGAGAT 748
Query 715 ATGTTACGGTTTATTGTGATGATGTTGATGTTGGTGTTCCGGTGAGTAGTGGTTCAGGGA 774
||||||| || |||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 749 ATGTTACTGTGTATTGTGATGATGTTGCTGTTGGTGTTCCGGTGAGTAGTGGTGAAGGGA 808
Query 775 AGATGGTTGGTTCTTCTAAGAGATGCAAAACTTATTGAGTTTTATTCACTTTAGGGATAT 834
||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 809 AGATGGTTGGTTCGTCTAAGAGATGCAAAACTTATTGAGTTTTA---------GGGATAT 859
Query 835 TATCTTA-ACTAATCTTTTGTAAATCGACTAT 865
|||||| ||||||||||||||||||||||||
Sbjct 860 TATCTTTGACTAATCTTTTGTAAATCGACTAT 891
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42196683480
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5