BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481626
Length=1263
Score E
Sequences producing significant alignments: (Bits) Value
AT2G27280.1 | Symbols: | Coiled-coil domain-containing protein... 1770 0.0
AT2G27285.1 | Symbols: | Coiled-coil domain-containing protein... 726 0.0
AT5G53400.1 | Symbols: BOB1 | HSP20-like chaperones superfamily... 84.2 3e-15
> AT2G27280.1 | Symbols: | Coiled-coil domain-containing protein
55 (DUF2040) | chr2:11673826-11675613 REVERSE LENGTH=1284
Length=1284
Score = 1770 bits (958), Expect = 0.0
Identities = 1172/1272 (92%), Gaps = 28/1272 (2%)
Strand=Plus/Plus
Query 6 ACCTTTTAGTGCAAGTTTTGATTCTTCAAACCCATTAGGGTTTTTGGAGAAAGTCCTTGA 65
||||||||||||||||||| || |||||||||||||||||||||| ||||| ||||||||
Sbjct 27 ACCTTTTAGTGCAAGTTTTAATCCTTCAAACCCATTAGGGTTTTTAGAGAATGTCCTTGA 86
Query 66 CTTTATTGGGAAAGAGAGCAACTTTCTGAGGAAAGACACGGCTGAGAAAGAGATCACCGA 125
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 87 CTTTATTGGGAAAGAGAGTAACTTTCTGAGGAAAGACACGGCTGAGAAAGAGATCACCGA 146
Query 126 TGCTGTTACGGCCGTGAAGGAGAGGTTGAGGGAAGCAGAGAAGAAGAAGATGACGGAGTC 185
||||||||| ||| |||||||||||||||||| | | | ||||| | | |||||||||
Sbjct 147 TGCTGTTACTACCGCAAAGGAGAGGTTGAGGGAAAC-G-G-AGAAG-A-A-GACGGAGTC 200
Query 186 CATGGAGGTGGAGAAGGTGAGAGCCTCGACGTTGCCGTTTAATTCACGTTTTGATCTTTC 245
|||||| ||||||||||| ||| ||||||| |||||||||||| || ||||||||| |||
Sbjct 201 CATGGATGTGGAGAAGGTTAGACCCTCGACATTGCCGTTTAATGCAAGTTTTGATCCTTC 260
Query 246 AGACCCATTAGGGTTTTTGAAGAAAGTCCTTGACTTTATTGGGAAAG-AGAGCAATTTTC 304
||| ||||||||||| ||| |||||||| |||| ||| ||||| ||| ||||||||||||
Sbjct 261 AGATCCATTAGGGTTCTTGGAGAAAGTCTTTGAATTTGTTGGG-AAGAAGAGCAATTTTC 319
Query 305 TAAG-GCAAGACAAGGCTGAGAAGGAGATCATTACCGCTGTTACGGCCGCGAAGGATAGG 363
| || | |||||||||||| ||| | |||||| || |||||||||| ||| ||||| |||
Sbjct 320 T-AGTGAAAGACAAGGCTGTGAATGCGATCATCACTGCTGTTACGGACGCCAAGGAGAGG 378
Query 364 TT-AAGGGAAGCGGAGAAGGAGAGTGTAAAGCAAGCAACAG-AGAAGATTAACAAGTACG 421
|| || ||||| ||||||||||||||||||||||||||||| | |||||||| |||||||
Sbjct 379 TTGAA-GGAAGAGGAGAAGGAGAGTGTAAAGCAAGCAACAGTA-AAGATTAAGAAGTACG 436
Query 422 GACTGCAAATTAGGGCTCCGTCACAGAAAAAACAGTCATCATCTCGACCTCCACTTCGGA 481
||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||
Sbjct 437 GACTGCAAATTAGGGCTCCGTCACAGAAAAAGCAATCATCATCTCGACCTCTACTTCGGA 496
Query 482 CTGCTTCAATATTTGGTGAGGATGATGAAGACAACGATGTCGAGAAGGAGATTTCTCGAC 541
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 497 CTGCTTCAATATTTGGTGAGGATGATGAAGAAAACGATGTGGAGAAGGAGATTTCTCGAC 556
Query 542 AAGCTTCAAAGACCAAGGCTCTTAAAAAGATTGAGGAGCAACATAAGAAAGCT-TTGAAG 600
||||||||||||||||| ||||||||||||||||| |||| |||||||||||| | | ||
Sbjct 557 AAGCTTCAAAGACCAAGTCTCTTAAAAAGATTGAGAAGCAGCATAAGAAAGCTATAG-AG 615
Query 601 GAGGATCCTTCTGCTTTTGCATACGATGAAGTTTATGATGACATTAAACATGAAGCAG-T 659
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 616 GAGGATCCTTCTGCTTTTGCATACGATGAAGTTTATGATGACATTAAACATGAAGCGGCT 675
Query 660 GCTTCCACGAATGCAAGATCGCGAAGAGCACAAGCCAAGATATATACAGCATATTATGAA 719
|||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 676 -CTTCCACGAATGCAAGATCGTGAAGAGCACAAGTCAAGATATATACAGCATATTATGAA 734
Query 720 ACAAGCAGAACGTAGAGGA-AAAGAACATGAAATAGTTTATGAGAGAAAGCTTGCGAAAG 778
|||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||
Sbjct 735 ACAAGCAGAACGTAGA-GAGAAAGAACATGAGATAGTTTATGAGAGAAAGCTTGCGAAAG 793
Query 779 AAAGGGCGAAAGACGAACATCTTTTTTCCGATAAAGAAAAGTTTGTAACTGGTCCCTTTA 838
|||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 794 AAAGAGCGAAAGACGAACATCTTTATTCGGATAAAGAAAAGTTTGTAACTGGTCCCTTTA 853
Query 839 AAAGAAAACTAGAGGAACAAAAGAAATGGCTGGCGGAAGAAAGATTTCGCGAACTTCGAG 898
||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||
Sbjct 854 AAAGAAAACTAGAGGAACAAAAGAAATGGCTGGAGGAAGAAAGATTGCGTGAACTTCGAG 913
Query 899 AAGAAAGAGATGATGTTACAAAGAAGAACGACTTAAGTGATTTCTACTTCAACATTGGTA 958
| |||||||||||||||||||||||||||||||| ||||| |||||| |||||||||| |
Sbjct 914 AGGAAAGAGATGATGTTACAAAGAAGAACGACTTGAGTGAATTCTACATCAACATTGGAA 973
Query 959 AAAATGTGGCATTTGGAGCTCGAGATATCGAAGCTAGAGATGCAGAGAGACTCGAGGAGC 1018
|||||||||||||||||||||||||||||||||||||||| |||| ||| ||| ||||||
Sbjct 974 AAAATGTGGCATTTGGAGCTCGAGATATCGAAGCTAGAGAGGCAGGGAGGCTCAAGGAGC 1033
Query 1019 TGAGAAAGGCAGATAGGCTCGAGGAGCCgagaaaagaagagacaattaaagagaagaaaa 1078
||||||||| ||||||||| ||||||| ||||||||||||||||| |||||||||||||
Sbjct 1034 TGAGAAAGGTAGATAGGCTTGAGGAGCTGAGAAAAGAAGAGACAAGGAAAGAGAAGAAAA 1093
Query 1079 gaaaatcaccggagaaggaagTGTCCCCTGACTCAGGAGATTTTGGATTAAGTAGTaaaa 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1094 GAAAATCACCGGAGAAGGAAGTGTCCCCTGACTCAGGAGATTTTGGATTAAGTAGTAAAA 1153
Query 1139 aaaGCGTCAAACCGCA-------TCAATCAAAGAGGCAGCAAAAAGAAACGCCGAAAGCC 1191
|||||||||||||||| ||||||||||||| ||||||| ||||||| |||||||
Sbjct 1154 AAAGCGTCAAACCGCAAGACGCATCAATCAAAGAGGAAGCAAAA-GAAACGCAGAAAGCC 1212
Query 1192 ACTAGAGAGGATGCGATAGCGGCTGCAAAAGAGCGGTTTGTATCCCGTAAGAAGGCAAAG 1251
||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||
Sbjct 1213 ACTAGAGAGGATGCGATAGCGACTGCAAAAGAACGGTTTCTATCCCGTAAGAAGGCAAAG 1272
Query 1252 ATAGAAAAGTAG 1263
||||||||||||
Sbjct 1273 ATAGAAAAGTAG 1284
> AT2G27285.1 | Symbols: | Coiled-coil domain-containing protein
55 (DUF2040) | chr2:11675960-11678118 REVERSE LENGTH=1312
Length=1312
Score = 726 bits (393), Expect = 0.0
Identities = 579/666 (87%), Gaps = 23/666 (3%)
Strand=Plus/Plus
Query 405 GAAGATTAACAAGTACGGACTGCAAATTAGGGCTCCGTCACAGAAAAAACAGTCATCATC 464
|||||| || ||||||||| ||||||| || ||||| || ||||||||||| ||||||||
Sbjct 218 GAAGATGAAGAAGTACGGATTGCAAATCAGAGCTCCTTCCCAGAAAAAACAATCATCATC 277
Query 465 TCGACCTCCACTTCGGA-CTGCTTCAATATTTGGTGAGGATGATGAAGA-CAACGATGTC 522
|||||||||||||| || | ||||||||||||| ||| | || ||||| | |||| |||
Sbjct 278 TCGACCTCCACTTC-GACCCGCTTCAATATTTGATGA--A-GAAGAAGATC-ACGACGTC 332
Query 523 GAGAAGGAGATTTCTCGACAAGCTTCAAAGACCAAGGCTCTTAAA-AAGATTGAGGAGCA 581
||||||||||||||||| ||||| |||||||||| |||| |||| || |||||||||||
Sbjct 333 GAGAAGGAGATTTCTCGTCAAGCAACAAAGACCAAAGCTCATAAAGAA-ATTGAGGAGCA 391
Query 582 ACATAAGAAAG-CTTTGAAGGAGGATCCTTCTGCTTTTGCATACGATGAAGTTTATGATG 640
|||||||||| ||| | |||||||||||||||||||| |||| ||||||||||||||||
Sbjct 392 GCATAAGAAAGCCTTAG-AGGAGGATCCTTCTGCTTTTTCATATGATGAAGTTTATGATG 450
Query 641 ACATTAAACATG-AAGCAGTGCTTCCACGAATGCAAGATCGCGAAGAGCACAAGCCAAGA 699
| || ||||| | |||| || ||||| |||||||||||||| ||||| | |||||||||
Sbjct 451 ATATGAAACA-GAAAGCTGTTCTTCCTCGAATGCAAGATCGTGAAGAACGCAAGCCAAGG 509
Query 700 TATATACAGCATATT-ATGAAACAAGCAGAACGTAGAGGA-AAAGAACATGAAATAGTTT 757
||||||||| || || |||||||| |||||||||||| || ||||||||||| |||||||
Sbjct 510 TATATACAGAAT-TTGATGAAACAGGCAGAACGTAGA-GAGAAAGAACATGAGATAGTTT 567
Query 758 ATGAGAGAAAGCTTGCGAAAGAAAGGGCGAAAGACGAACATCTTTTTTCCGATAAAGAAA 817
|||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||
Sbjct 568 ATGAGAGAAAGCTTGCGAAAGAGAGGGAGAAAGACGAACATCTTTTTTCGGATAAAGAAA 627
Query 818 AGTTTGTAACTGGTCCCTT-TAAAAGAAAACTAGAGGAACAAAAGAAATGGCTGGCGGAA 876
||||||| ||||| | ||| |||||| ||||| ||||||||||||||||||||||| |||
Sbjct 628 AGTTTGTTACTGG-CGCTTATAAAAGGAAACTTGAGGAACAAAAGAAATGGCTGGCAGAA 686
Query 877 GAAAGATTTCGCGAACTTCGAGAAGAAAGAGATGATGTTACAAAGAAGAACGACTTAAGT 936
|||||||| || |||||||| || ||||||||||||||||| |||||||| || || |||
Sbjct 687 GAAAGATTGCGTGAACTTCGTGAGGAAAGAGATGATGTTACTAAGAAGAAAGATTTGAGT 746
Query 937 GATTTCTACTTCAACATTGGTAAAAATGTGGCATTTGGAGCTCGAGATA-TCGAAGCTAG 995
|||||||||||||||||||| |||||||| || |||||||||||||| | |||||||||
Sbjct 747 GATTTCTACTTCAACATTGGAAAAAATGTCGCTTTTGGAGCTCGAGA-AGTCGAAGCTAA 805
Query 996 AGATGCAGAGA-GACTCGAGGAGCTGAGAAAGGCAGATAGGCTCGAGGAGCCgagaaaag 1054
||| ||||||| | |||||||| | ||||||||||| | ||||||||| | ||||| |
Sbjct 806 AGAGGCAGAGAAG-CTCGAGGAACAAAGAAAGGCAGAGAAGCTCGAGGAACAAAGAAAGG 864
Query 1055 aagaga 1060
|||||
Sbjct 865 CAGAGA 870
> AT5G53400.1 | Symbols: BOB1 | HSP20-like chaperones superfamily
protein | chr5:21661445-21663572 FORWARD LENGTH=1247
Length=1247
Score = 84.2 bits (45), Expect = 3e-15
Identities = 117/151 (77%), Gaps = 8/151 (5%)
Strand=Plus/Plus
Query 27 TTCTTCAAACCCATTAGGGTTTTTGGAGAAAGTCCTT-GACTTTATTGG-GAAAGAGAGC 84
|||| |||||||||||||||||||||||||||| || |||||| | || ||| |||||
Sbjct 221 TTCTGCAAACCCATTAGGGTTTTTGGAGAAAGTT-TTCGACTTTCTCGGAGAAC-AGAGC 278
Query 85 AACTTTCTGAGGAAAGACACGGCTGAGAAAGAGATCACCGAT-GCTGTTACGGCCGTGAA 143
| ||||| | |||| | | || ||| | |||||| || | || |||| ||| | |||
Sbjct 279 GATTTTCTCAAGAAACCCTCCGCGGAGGACGAGATCGTCG-TCGCGGTTAGGGCGGCGAA 337
Query 144 GGAGAGGTTGAGGGAAG-CAGAGAAGAAGAA 173
||||| ||||| ||| | |||||||||||
Sbjct 338 GGAGAAGTTGAAA-AAGGCTGAGAAGAAGAA 367
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62098074165
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5