BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg481627 Length=1147 Score E Sequences producing significant alignments: (Bits) Value AT2G27285.1 | Symbols: | Coiled-coil domain-containing protein... 1478 0.0 AT2G27280.1 | Symbols: | Coiled-coil domain-containing protein... 765 0.0 AT1G55928.1 | Symbols: | Coiled-coil domain-containing protein... 512 3e-144 > AT2G27285.1 | Symbols: | Coiled-coil domain-containing protein 55 (DUF2040) | chr2:11675960-11678118 REVERSE LENGTH=1312 Length=1312 Score = 1478 bits (800), Expect = 0.0 Identities = 1028/1133 (91%), Gaps = 36/1133 (3%) Strand=Plus/Plus Query 26 TGGAAGAGAAATCGAAGATGAAGAAGTACGGATTGCAAATCAGAGCTCCTTCCCAGAAAA 85 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 205 TGGAATAGAAATCGAAGATGAAGAAGTACGGATTGCAAATCAGAGCTCCTTCCCAGAAAA 264 Query 86 AACAATCATCATCTCGACCTCCACTTCGACTTGCTTCAATATTTGGTGAAGAAGAAGATC 145 |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 265 AACAATCATCATCTCGACCTCCACTTCGACCCGCTTCAATATTTGATGAAGAAGAAGATC 324 Query 146 ACGATGTCGAGAAGGAGATTTCTCGTCAAGCTTCAAAGACTAAAGCTCTTAAAGAAATTG 205 |||| |||||||||||||||||||||||||| ||||||| ||||||| ||||||||||| Sbjct 325 ACGACGTCGAGAAGGAGATTTCTCGTCAAGCAACAAAGACCAAAGCTCATAAAGAAATTG 384 Query 206 AGGAGCAGCATAAGAAAGCCTTAGAGGAGGATCCTTCAGCTTTTGCGTATGATGAAGTTT 265 ||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||| Sbjct 385 AGGAGCAGCATAAGAAAGCCTTAGAGGAGGATCCTTCTGCTTTTTCATATGATGAAGTTT 444 Query 266 ATGATGATATGAAACAGAAAGCTGTTCTTCCACGAATGCAAGATCGCGAAGAACGCAAGC 325 ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| Sbjct 445 ATGATGATATGAAACAGAAAGCTGTTCTTCCTCGAATGCAAGATCGTGAAGAACGCAAGC 504 Query 326 CAAGATATATACAGCATTTGATGAAACAGGCAGAACGTAGAGAGAAAGAACATGAAATAG 385 |||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |||| Sbjct 505 CAAGGTATATACAGAATTTGATGAAACAGGCAGAACGTAGAGAGAAAGAACATGAGATAG 564 Query 386 TTTACGAGAGAAAGCTTGCGAAGGAGAGGGAGAAAGATGAACATCTTTTTTCGGATAAAG 445 |||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||| Sbjct 565 TTTATGAGAGAAAGCTTGCGAAAGAGAGGGAGAAAGACGAACATCTTTTTTCGGATAAAG 624 Query 446 AAAAGTTTGTAACTGGTGCTTATAAAAGGAAACTTGAGGAACAAAAGAAATGGCTGGCGG 505 |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| | Sbjct 625 AAAAGTTTGTTACTGGCGCTTATAAAAGGAAACTTGAGGAACAAAAGAAATGGCTGGCAG 684 Query 506 AAGAAAGATTGCGTGAACTTCGAGAGGAAAGAGATGATGTTACAAAGAAGAAAGACTTGA 565 |||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||| Sbjct 685 AAGAAAGATTGCGTGAACTTCGTGAGGAAAGAGATGATGTTACTAAGAAGAAAGATTTGA 744 Query 566 GTGATTTCTACTTCAACATTGGAAAAAATGTGGCATTTGGAGCTCGAGATAA-CGAAGCT 624 ||||||||||||||||||||||||||||||| || |||||||||||||| | ||||||| Sbjct 745 GTGATTTCTACTTCAACATTGGAAAAAATGTCGCTTTTGGAGCTCGAGA-AGTCGAAGCT 803 Query 625 AAAGAGGTAGAGA-GACTTGAGGAACAAAGAAAGGCTGAGAAGCTCGAGGAACaaagaa- 682 ||||||| ||||| | || ||||||||||||||||| |||||||||||||||||||||| Sbjct 804 AAAGAGGCAGAGAAG-CTCGAGGAACAAAGAAAGGCAGAGAAGCTCGAGGAACAAAGAAA 862 Query 683 ggacagagaagcgt-gaggagctgaaaaaagaagaaacaaggg-aggagaggaaaagaaa 740 || ||||||||| | |||||||||| |||||||| |||||||| || ||| |||| |||| Sbjct 863 GG-CAGAGAAGC-TCGAGGAGCTGAGAAAAGAAGTAACAAGGGTAG-AGAAGAAACGAAA 919 Query 741 atcaccagagaaggaattgccagagaaggaagTGTCTCCTGACTCAAGAGATTTTGGATC 800 |||||| | || | || | || | | | | |||||||||| |||| |||||||| Sbjct 920 ATCACC-G-GA-G-AA--G---GA-A-GTA--T--CTCCTGACTCGGGAGAATTTGGATC 964 Query 801 AAGTCGTAGCAAAAGTTTGGAGCCACAAGAAGCAGAGCAAGCAGTTTCTGAAAAGAAGAT 860 |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| Sbjct 965 AAGTCGTAGCAAAAGTTTGGAGCCACTAGAAGCAGAGCAAGCAGTTTCTGAAAAGGAGAT 1024 Query 861 GGGTTCAGATGGTACTGAAGAGAGAGACTCTTCAATCAAAGAGGCAGCAAAAGAAGTGCC 920 |||||||||||| |||||||||||| | || ||||||||||||||||||||||||||||| Sbjct 1025 GGGTTCAGATGGCACTGAAGAGAGAAAGTCATCAATCAAAGAGGCAGCAAAAGAAGTGCC 1084 Query 921 GAAAGCCATTAACGACCAAAAGAGAAGAGAGGATGCGATTGCTGCTGCGAAAGAGCGGTT 980 |||||||||||||||||| |||||||||||||||||||| ||||| || |||||| |||| Sbjct 1085 GAAAGCCATTAACGACCAGAAGAGAAGAGAGGATGCGATCGCTGCCGCTAAAGAGAGGTT 1144 Query 981 CTTGGCCCGTAAGAAGGCAAAGATTGAAGAACT-TGTGTAACTTGGCAGATTTTTGTCCA 1039 | ||||||||||||||||||| |||||||| | |||| |||||||| ||||| ||||| Sbjct 1145 CCTGGCCCGTAAGAAGGCAAAAATTGAAGAG-TATGTGCAACTTGGCTGATTTCAGTCCA 1203 Query 1040 AT-GATCACCAACTTTTCGTGAACTGGTCTT-TTGT--TTGTCGACCACCCTCTGTTTTA 1095 || | | | || | || ||||||| ||||| || | || ||||||||||||| ||||| Sbjct 1204 ATAGTT-A--AA-TCTTGGTGAACTTGTCTTCTTCTGATTATCGACCACCCTCTTTTTTA 1259 Query 1096 -AAGTAACTTTTCATGATAACGCTTCTTAAACTACATGGTCTACTTCCATTAC 1147 ||||||||||||| |||||||||||||| | |||| |||||||||||||||| Sbjct 1260 TAAGTAACTTTTCAAGATAACGCTTCTTATATTACAGGGTCTACTTCCATTAC 1312 > AT2G27280.1 | Symbols: | Coiled-coil domain-containing protein 55 (DUF2040) | chr2:11673826-11675613 REVERSE LENGTH=1284 Length=1284 Score = 765 bits (414), Expect = 0.0 Identities = 573/647 (89%), Gaps = 21/647 (3%) Strand=Plus/Plus Query 40 AAGATGAAGAAGTACGGATTGCAAATCAGAGCTCCTTCCCAGAAAAAACAATCATCATCT 99 ||||| |||||||||||| ||||||| || ||||| || |||||||| |||||||||||| Sbjct 421 AAGATTAAGAAGTACGGACTGCAAATTAGGGCTCCGTCACAGAAAAAGCAATCATCATCT 480 Query 100 CGACCTCCACTTC-GACTTGCTTCAATATTTGGTGA--A-GAAGAAGATCACGATGTCGA 155 ||||||| ||||| ||| |||||||||||||||||| | || ||||| ||||||| || Sbjct 481 CGACCTCTACTTCGGAC-TGCTTCAATATTTGGTGAGGATGATGAAGAAAACGATGTGGA 539 Query 156 GAAGGAGATTTCTCGTCAAGCTTCAAAGACTAAAG-CTCTTAAAGAA-ATTGAGGAGCAG 213 ||||||||||||||| |||||||||||||| ||| |||||||| || |||||| ||||| Sbjct 540 GAAGGAGATTTCTCGACAAGCTTCAAAGAC-CAAGTCTCTTAAA-AAGATTGAGAAGCAG 597 Query 214 CATAAGAAAGCCT-TAGAGGAGGATCCTTCAGCTTTTGCGTATGATGAAGTTTATGATGA 272 |||||||||| || |||||||||||||||| |||||||| || ||||||||||||||||| Sbjct 598 CATAAGAAAG-CTATAGAGGAGGATCCTTCTGCTTTTGCATACGATGAAGTTTATGATGA 656 Query 273 TATGAAACA-GAAAGCTGTTCTTCCACGAATGCAAGATCGCGAAGAACGCAAGCCAAGAT 331 || ||||| | |||| | ||||||||||||||||||||| ||||| | |||| |||||| Sbjct 657 CATTAAACATG-AAGCGGCTCTTCCACGAATGCAAGATCGTGAAGAGCACAAGTCAAGAT 715 Query 332 ATATACAGCAT-TTGATGAAACAGGCAGAACGTAGAGAGAAAGAACATGAAATAGTTTAC 390 ||||||||||| || |||||||| |||||||||||||||||||||||||| |||||||| Sbjct 716 ATATACAGCATATT-ATGAAACAAGCAGAACGTAGAGAGAAAGAACATGAGATAGTTTAT 774 Query 391 GAGAGAAAGCTTGCGAAGGAGAGGGAGAAAGATGAACATCTTTTTTCGGATAAAGAAAAG 450 ||||||||||||||||| || || | |||||| |||||||||| |||||||||||||||| Sbjct 775 GAGAGAAAGCTTGCGAAAGAAAGAGCGAAAGACGAACATCTTTATTCGGATAAAGAAAAG 834 Query 451 TTTGTAACTGGT-GCTTATAAAAGGAAACTTGAGGAACAAAAGAAATGGCTGGCGGAAGA 509 |||||||||||| ||| |||||| ||||| |||||||||||||||||||||| |||||| Sbjct 835 TTTGTAACTGGTCCCTT-TAAAAGAAAACTAGAGGAACAAAAGAAATGGCTGGAGGAAGA 893 Query 510 AAGATTGCGTGAACTTCGAGAGGAAAGAGATGATGTTACAAAGAAGAAAGACTTGAGTGA 569 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 894 AAGATTGCGTGAACTTCGAGAGGAAAGAGATGATGTTACAAAGAAGAACGACTTGAGTGA 953 Query 570 TTTCTACTTCAACATTGGAAAAAATGTGGCATTTGGAGCTCGAGATAACGAAGCTAAAGA 629 |||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||| Sbjct 954 ATTCTACATCAACATTGGAAAAAATGTGGCATTTGGAGCTCGAGATATCGAAGCTAGAGA 1013 Query 630 GGTAGAGAGACTTGAGGAACAAAGAAAGGCTGAGA-AG-CTCGAGGA 674 || || ||| || |||| | ||||||| | ||| || || ||||| Sbjct 1014 GGCAGGGAGGCTCAAGGAGCTGAGAAAGG-T-AGATAGGCTTGAGGA 1058 > AT1G55928.1 | Symbols: | Coiled-coil domain-containing protein 55 (DUF2040) | chr1:20917190-20918462 FORWARD LENGTH=1273 Length=1273 Score = 512 bits (277), Expect = 3e-144 Identities = 467/556 (84%), Gaps = 24/556 (4%) Strand=Plus/Plus Query 116 TTGCTTCAATATTTGGTG-A-A-GAAGAAGATC-ACGATGTCGAGAAGGAGATTTCTCGT 171 ||||| ||||| |||||| | | |||||||| | ||||||| || ||||||||||||||| Sbjct 370 TTGCTCCAATACTTGGTGAAGATGAAGAAGA-CAACGATGTGGACAAGGAGATTTCTCGT 428 Query 172 CAAGCTTCAAAGACTAAAG-CTCTTAAAGAAATT-GAGGAGCAGCATAAGAAAGCCTTAG 229 |||||||||||||| || | ||||||| |||||| ||||||||||||||||||||||| | Sbjct 429 CAAGCTTCAAAGACCAA-GTCTCTTAA-GAAATTTGAGGAGCAGCATAAGAAAGCCTTGG 486 Query 230 AGGAGGATCCTTCAGCTTTTGCGTATGATGAAGTTTATGATGATATGAAACAGAAAGCTG 289 |||| || |||| |||||||| || ||||||||||||||||| | ||||||| |||| Sbjct 487 AGGAAGACCCTTGTGCTTTTGCTTACGATGAAGTTTATGATGACACGAAACAGGAAGCAC 546 Query 290 TTCTTCCACGAATGCAAGATCG-CGAAGAACGCAA---GCCAAGATATATAC-AGCATT- 343 |||||||||| | || || || | |||| |||| ||| | ||||| || ||| || Sbjct 547 CTCTTCCACGACTACATGAACGTC-AAGAGTGCAATAAGCCTATATATA-ACCAGC-TTA 603 Query 344 TGATG-AAACAGGCAGAACGTAGAGAGAAAGAACATGAAATAGTTTACGAGAGAAAGCTT 402 ||| | ||| ||||||| || ||| ||||||||| ||| ||||||||||||||||||||| Sbjct 604 TGAAGGAAA-AGGCAGACCGGAGACAGAAAGAACGTGAGATAGTTTACGAGAGAAAGCTT 662 Query 403 GCGAAGGAGAGGGAGAAAGATG-AACATCTTTTTTCGGATAAAGAAAAGTTTGTAACTGG 461 ||||| ||||| | ||||| | ||||||||||| | ||| ||| ||| ||||||| || Sbjct 663 GCGAAAGAGAGAGCCAAAGA-GCAACATCTTTTTCCAGATCAAGTTAAGGTTGTAACCGG 721 Query 462 T-GCTTATAAAAGGAAACTTGAGGAACAAAAGAAATGGCTGGCGGAAGAAAGATTGCGTG 520 | | ||||||||||||||| ||||||| | | ||||||| | |||||||||||||||| Sbjct 722 TAG-TTATAAAAGGAAACTAGAGGAACGAGATCAATGGCTCTCAGAAGAAAGATTGCGTG 780 Query 521 AACTTCGAGAGGAAAGAGATGATGTTACAAAGAAGAAAGACTTGAGTGATTTCTACTTCA 580 ||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||| Sbjct 781 AACTTGGAGAGGAAAAAGATGATGTTACAAAGAAGAAGGACTTGAGTGATTTCTACTTCA 840 Query 581 ACATTGGAAAAAATGTGGCATTTGGAGCTCGAGATAACGAAGCTAAAGAGGTAGAGAGAC 640 ||||||| ||||||||||| |||||||||||||||| | |||||| |||| |||||| | Sbjct 841 ACATTGGGAAAAATGTGGCGTTTGGAGCTCGAGATATCAAAGCTAGAGAGACAGAGAGGC 900 Query 641 TTGAGGAACAAAGAAA 656 | |||| |||||||| Sbjct 901 TCAAGGAGCAAAGAAA 916 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56274810945 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5