BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481627
Length=1147
Score E
Sequences producing significant alignments: (Bits) Value
AT2G27285.1 | Symbols: | Coiled-coil domain-containing protein... 1478 0.0
AT2G27280.1 | Symbols: | Coiled-coil domain-containing protein... 765 0.0
AT1G55928.1 | Symbols: | Coiled-coil domain-containing protein... 512 3e-144
> AT2G27285.1 | Symbols: | Coiled-coil domain-containing protein
55 (DUF2040) | chr2:11675960-11678118 REVERSE LENGTH=1312
Length=1312
Score = 1478 bits (800), Expect = 0.0
Identities = 1028/1133 (91%), Gaps = 36/1133 (3%)
Strand=Plus/Plus
Query 26 TGGAAGAGAAATCGAAGATGAAGAAGTACGGATTGCAAATCAGAGCTCCTTCCCAGAAAA 85
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 205 TGGAATAGAAATCGAAGATGAAGAAGTACGGATTGCAAATCAGAGCTCCTTCCCAGAAAA 264
Query 86 AACAATCATCATCTCGACCTCCACTTCGACTTGCTTCAATATTTGGTGAAGAAGAAGATC 145
|||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 265 AACAATCATCATCTCGACCTCCACTTCGACCCGCTTCAATATTTGATGAAGAAGAAGATC 324
Query 146 ACGATGTCGAGAAGGAGATTTCTCGTCAAGCTTCAAAGACTAAAGCTCTTAAAGAAATTG 205
|||| |||||||||||||||||||||||||| ||||||| ||||||| |||||||||||
Sbjct 325 ACGACGTCGAGAAGGAGATTTCTCGTCAAGCAACAAAGACCAAAGCTCATAAAGAAATTG 384
Query 206 AGGAGCAGCATAAGAAAGCCTTAGAGGAGGATCCTTCAGCTTTTGCGTATGATGAAGTTT 265
||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||
Sbjct 385 AGGAGCAGCATAAGAAAGCCTTAGAGGAGGATCCTTCTGCTTTTTCATATGATGAAGTTT 444
Query 266 ATGATGATATGAAACAGAAAGCTGTTCTTCCACGAATGCAAGATCGCGAAGAACGCAAGC 325
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 445 ATGATGATATGAAACAGAAAGCTGTTCTTCCTCGAATGCAAGATCGTGAAGAACGCAAGC 504
Query 326 CAAGATATATACAGCATTTGATGAAACAGGCAGAACGTAGAGAGAAAGAACATGAAATAG 385
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 505 CAAGGTATATACAGAATTTGATGAAACAGGCAGAACGTAGAGAGAAAGAACATGAGATAG 564
Query 386 TTTACGAGAGAAAGCTTGCGAAGGAGAGGGAGAAAGATGAACATCTTTTTTCGGATAAAG 445
|||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 565 TTTATGAGAGAAAGCTTGCGAAAGAGAGGGAGAAAGACGAACATCTTTTTTCGGATAAAG 624
Query 446 AAAAGTTTGTAACTGGTGCTTATAAAAGGAAACTTGAGGAACAAAAGAAATGGCTGGCGG 505
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 625 AAAAGTTTGTTACTGGCGCTTATAAAAGGAAACTTGAGGAACAAAAGAAATGGCTGGCAG 684
Query 506 AAGAAAGATTGCGTGAACTTCGAGAGGAAAGAGATGATGTTACAAAGAAGAAAGACTTGA 565
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||
Sbjct 685 AAGAAAGATTGCGTGAACTTCGTGAGGAAAGAGATGATGTTACTAAGAAGAAAGATTTGA 744
Query 566 GTGATTTCTACTTCAACATTGGAAAAAATGTGGCATTTGGAGCTCGAGATAA-CGAAGCT 624
||||||||||||||||||||||||||||||| || |||||||||||||| | |||||||
Sbjct 745 GTGATTTCTACTTCAACATTGGAAAAAATGTCGCTTTTGGAGCTCGAGA-AGTCGAAGCT 803
Query 625 AAAGAGGTAGAGA-GACTTGAGGAACAAAGAAAGGCTGAGAAGCTCGAGGAACaaagaa- 682
||||||| ||||| | || ||||||||||||||||| ||||||||||||||||||||||
Sbjct 804 AAAGAGGCAGAGAAG-CTCGAGGAACAAAGAAAGGCAGAGAAGCTCGAGGAACAAAGAAA 862
Query 683 ggacagagaagcgt-gaggagctgaaaaaagaagaaacaaggg-aggagaggaaaagaaa 740
|| ||||||||| | |||||||||| |||||||| |||||||| || ||| |||| ||||
Sbjct 863 GG-CAGAGAAGC-TCGAGGAGCTGAGAAAAGAAGTAACAAGGGTAG-AGAAGAAACGAAA 919
Query 741 atcaccagagaaggaattgccagagaaggaagTGTCTCCTGACTCAAGAGATTTTGGATC 800
|||||| | || | || | || | | | | |||||||||| |||| ||||||||
Sbjct 920 ATCACC-G-GA-G-AA--G---GA-A-GTA--T--CTCCTGACTCGGGAGAATTTGGATC 964
Query 801 AAGTCGTAGCAAAAGTTTGGAGCCACAAGAAGCAGAGCAAGCAGTTTCTGAAAAGAAGAT 860
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 965 AAGTCGTAGCAAAAGTTTGGAGCCACTAGAAGCAGAGCAAGCAGTTTCTGAAAAGGAGAT 1024
Query 861 GGGTTCAGATGGTACTGAAGAGAGAGACTCTTCAATCAAAGAGGCAGCAAAAGAAGTGCC 920
|||||||||||| |||||||||||| | || |||||||||||||||||||||||||||||
Sbjct 1025 GGGTTCAGATGGCACTGAAGAGAGAAAGTCATCAATCAAAGAGGCAGCAAAAGAAGTGCC 1084
Query 921 GAAAGCCATTAACGACCAAAAGAGAAGAGAGGATGCGATTGCTGCTGCGAAAGAGCGGTT 980
|||||||||||||||||| |||||||||||||||||||| ||||| || |||||| ||||
Sbjct 1085 GAAAGCCATTAACGACCAGAAGAGAAGAGAGGATGCGATCGCTGCCGCTAAAGAGAGGTT 1144
Query 981 CTTGGCCCGTAAGAAGGCAAAGATTGAAGAACT-TGTGTAACTTGGCAGATTTTTGTCCA 1039
| ||||||||||||||||||| |||||||| | |||| |||||||| ||||| |||||
Sbjct 1145 CCTGGCCCGTAAGAAGGCAAAAATTGAAGAG-TATGTGCAACTTGGCTGATTTCAGTCCA 1203
Query 1040 AT-GATCACCAACTTTTCGTGAACTGGTCTT-TTGT--TTGTCGACCACCCTCTGTTTTA 1095
|| | | | || | || ||||||| ||||| || | || ||||||||||||| |||||
Sbjct 1204 ATAGTT-A--AA-TCTTGGTGAACTTGTCTTCTTCTGATTATCGACCACCCTCTTTTTTA 1259
Query 1096 -AAGTAACTTTTCATGATAACGCTTCTTAAACTACATGGTCTACTTCCATTAC 1147
||||||||||||| |||||||||||||| | |||| ||||||||||||||||
Sbjct 1260 TAAGTAACTTTTCAAGATAACGCTTCTTATATTACAGGGTCTACTTCCATTAC 1312
> AT2G27280.1 | Symbols: | Coiled-coil domain-containing protein
55 (DUF2040) | chr2:11673826-11675613 REVERSE LENGTH=1284
Length=1284
Score = 765 bits (414), Expect = 0.0
Identities = 573/647 (89%), Gaps = 21/647 (3%)
Strand=Plus/Plus
Query 40 AAGATGAAGAAGTACGGATTGCAAATCAGAGCTCCTTCCCAGAAAAAACAATCATCATCT 99
||||| |||||||||||| ||||||| || ||||| || |||||||| ||||||||||||
Sbjct 421 AAGATTAAGAAGTACGGACTGCAAATTAGGGCTCCGTCACAGAAAAAGCAATCATCATCT 480
Query 100 CGACCTCCACTTC-GACTTGCTTCAATATTTGGTGA--A-GAAGAAGATCACGATGTCGA 155
||||||| ||||| ||| |||||||||||||||||| | || ||||| ||||||| ||
Sbjct 481 CGACCTCTACTTCGGAC-TGCTTCAATATTTGGTGAGGATGATGAAGAAAACGATGTGGA 539
Query 156 GAAGGAGATTTCTCGTCAAGCTTCAAAGACTAAAG-CTCTTAAAGAA-ATTGAGGAGCAG 213
||||||||||||||| |||||||||||||| ||| |||||||| || |||||| |||||
Sbjct 540 GAAGGAGATTTCTCGACAAGCTTCAAAGAC-CAAGTCTCTTAAA-AAGATTGAGAAGCAG 597
Query 214 CATAAGAAAGCCT-TAGAGGAGGATCCTTCAGCTTTTGCGTATGATGAAGTTTATGATGA 272
|||||||||| || |||||||||||||||| |||||||| || |||||||||||||||||
Sbjct 598 CATAAGAAAG-CTATAGAGGAGGATCCTTCTGCTTTTGCATACGATGAAGTTTATGATGA 656
Query 273 TATGAAACA-GAAAGCTGTTCTTCCACGAATGCAAGATCGCGAAGAACGCAAGCCAAGAT 331
|| ||||| | |||| | ||||||||||||||||||||| ||||| | |||| ||||||
Sbjct 657 CATTAAACATG-AAGCGGCTCTTCCACGAATGCAAGATCGTGAAGAGCACAAGTCAAGAT 715
Query 332 ATATACAGCAT-TTGATGAAACAGGCAGAACGTAGAGAGAAAGAACATGAAATAGTTTAC 390
||||||||||| || |||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 716 ATATACAGCATATT-ATGAAACAAGCAGAACGTAGAGAGAAAGAACATGAGATAGTTTAT 774
Query 391 GAGAGAAAGCTTGCGAAGGAGAGGGAGAAAGATGAACATCTTTTTTCGGATAAAGAAAAG 450
||||||||||||||||| || || | |||||| |||||||||| ||||||||||||||||
Sbjct 775 GAGAGAAAGCTTGCGAAAGAAAGAGCGAAAGACGAACATCTTTATTCGGATAAAGAAAAG 834
Query 451 TTTGTAACTGGT-GCTTATAAAAGGAAACTTGAGGAACAAAAGAAATGGCTGGCGGAAGA 509
|||||||||||| ||| |||||| ||||| |||||||||||||||||||||| ||||||
Sbjct 835 TTTGTAACTGGTCCCTT-TAAAAGAAAACTAGAGGAACAAAAGAAATGGCTGGAGGAAGA 893
Query 510 AAGATTGCGTGAACTTCGAGAGGAAAGAGATGATGTTACAAAGAAGAAAGACTTGAGTGA 569
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 894 AAGATTGCGTGAACTTCGAGAGGAAAGAGATGATGTTACAAAGAAGAACGACTTGAGTGA 953
Query 570 TTTCTACTTCAACATTGGAAAAAATGTGGCATTTGGAGCTCGAGATAACGAAGCTAAAGA 629
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 954 ATTCTACATCAACATTGGAAAAAATGTGGCATTTGGAGCTCGAGATATCGAAGCTAGAGA 1013
Query 630 GGTAGAGAGACTTGAGGAACAAAGAAAGGCTGAGA-AG-CTCGAGGA 674
|| || ||| || |||| | ||||||| | ||| || || |||||
Sbjct 1014 GGCAGGGAGGCTCAAGGAGCTGAGAAAGG-T-AGATAGGCTTGAGGA 1058
> AT1G55928.1 | Symbols: | Coiled-coil domain-containing protein
55 (DUF2040) | chr1:20917190-20918462 FORWARD LENGTH=1273
Length=1273
Score = 512 bits (277), Expect = 3e-144
Identities = 467/556 (84%), Gaps = 24/556 (4%)
Strand=Plus/Plus
Query 116 TTGCTTCAATATTTGGTG-A-A-GAAGAAGATC-ACGATGTCGAGAAGGAGATTTCTCGT 171
||||| ||||| |||||| | | |||||||| | ||||||| || |||||||||||||||
Sbjct 370 TTGCTCCAATACTTGGTGAAGATGAAGAAGA-CAACGATGTGGACAAGGAGATTTCTCGT 428
Query 172 CAAGCTTCAAAGACTAAAG-CTCTTAAAGAAATT-GAGGAGCAGCATAAGAAAGCCTTAG 229
|||||||||||||| || | ||||||| |||||| ||||||||||||||||||||||| |
Sbjct 429 CAAGCTTCAAAGACCAA-GTCTCTTAA-GAAATTTGAGGAGCAGCATAAGAAAGCCTTGG 486
Query 230 AGGAGGATCCTTCAGCTTTTGCGTATGATGAAGTTTATGATGATATGAAACAGAAAGCTG 289
|||| || |||| |||||||| || ||||||||||||||||| | ||||||| ||||
Sbjct 487 AGGAAGACCCTTGTGCTTTTGCTTACGATGAAGTTTATGATGACACGAAACAGGAAGCAC 546
Query 290 TTCTTCCACGAATGCAAGATCG-CGAAGAACGCAA---GCCAAGATATATAC-AGCATT- 343
|||||||||| | || || || | |||| |||| ||| | ||||| || ||| ||
Sbjct 547 CTCTTCCACGACTACATGAACGTC-AAGAGTGCAATAAGCCTATATATA-ACCAGC-TTA 603
Query 344 TGATG-AAACAGGCAGAACGTAGAGAGAAAGAACATGAAATAGTTTACGAGAGAAAGCTT 402
||| | ||| ||||||| || ||| ||||||||| ||| |||||||||||||||||||||
Sbjct 604 TGAAGGAAA-AGGCAGACCGGAGACAGAAAGAACGTGAGATAGTTTACGAGAGAAAGCTT 662
Query 403 GCGAAGGAGAGGGAGAAAGATG-AACATCTTTTTTCGGATAAAGAAAAGTTTGTAACTGG 461
||||| ||||| | ||||| | ||||||||||| | ||| ||| ||| ||||||| ||
Sbjct 663 GCGAAAGAGAGAGCCAAAGA-GCAACATCTTTTTCCAGATCAAGTTAAGGTTGTAACCGG 721
Query 462 T-GCTTATAAAAGGAAACTTGAGGAACAAAAGAAATGGCTGGCGGAAGAAAGATTGCGTG 520
| | ||||||||||||||| ||||||| | | ||||||| | ||||||||||||||||
Sbjct 722 TAG-TTATAAAAGGAAACTAGAGGAACGAGATCAATGGCTCTCAGAAGAAAGATTGCGTG 780
Query 521 AACTTCGAGAGGAAAGAGATGATGTTACAAAGAAGAAAGACTTGAGTGATTTCTACTTCA 580
||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 781 AACTTGGAGAGGAAAAAGATGATGTTACAAAGAAGAAGGACTTGAGTGATTTCTACTTCA 840
Query 581 ACATTGGAAAAAATGTGGCATTTGGAGCTCGAGATAACGAAGCTAAAGAGGTAGAGAGAC 640
||||||| ||||||||||| |||||||||||||||| | |||||| |||| |||||| |
Sbjct 841 ACATTGGGAAAAATGTGGCGTTTGGAGCTCGAGATATCAAAGCTAGAGAGACAGAGAGGC 900
Query 641 TTGAGGAACAAAGAAA 656
| |||| ||||||||
Sbjct 901 TCAAGGAGCAAAGAAA 916
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56274810945
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5