BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481629
Length=1002
Score E
Sequences producing significant alignments: (Bits) Value
AT2G27300.1 | Symbols: ANAC040, NTL8 | NTM1-like 8 | chr2:11680... 1539 0.0
> AT2G27300.1 | Symbols: ANAC040, NTL8 | NTM1-like 8 | chr2:11680417-11681955
REVERSE LENGTH=1008
Length=1008
Score = 1539 bits (833), Expect = 0.0
Identities = 951/1007 (94%), Gaps = 11/1007 (1%)
Strand=Plus/Plus
Query 1 ATGTCTAAAGAAGCTGAGATGTCGATCGCGGTGTCGGCTTTGTTCCCTGGTTTTAGATTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCTAAAGAAGCTGAGATGTCGATCGCGGTGTCGGCTTTGTTCCCTGGTTTTAGATTC 60
Query 61 TGTCCTACCGATGTGGAACTTATCTCGTACTATCTTCGTCGTAAAATCGATGGCGATGAG 120
| |||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 TCTCCTACTGATGTTGAACTTATCTCGTACTATCTTCGTCGTAAAATCGATGGTGATGAG 120
Query 121 GACTCTGTTGCTGTGATTGCTGAGGTCGAGATTTACAAGTTCGAACCGTGGGACTTGCCA 180
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 121 AACTCTGTTGCTGTGATTGCTGAGGTCGAGATTTACAAGTTCGAGCCGTGGGACTTGCCA 180
Query 181 GAGGAATCGAAACTGAAATCGGAGAACGAGTGGTTTTACTTCTGCGCGAGGGGGAGGAAG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GAGGAATCGAAACTGAAATCGGAGAACGAGTGGTTTTACTTCTGCGCGAGGGGGAGGAAG 240
Query 241 TACCCGCACGGGTCACAGAGCCGGCGAGCCACAAAACTTGGATATTGGAAAGCGACTGGT 300
||||||||||||||||| ||||||||||||||| | || ||||||||||||||||| |||
Sbjct 241 TACCCGCACGGGTCACAAAGCCGGCGAGCCACACAGCTAGGATATTGGAAAGCGACCGGT 300
Query 301 AAAGAGCGGACTGTTAAATCGGGGAACCAAGATGTTGGAAGCAAGAGAACACTTGTTTTT 360
|||||||||| ||||||||| |||||||||| |||||||| ||||||||| ||||| |||
Sbjct 301 AAAGAGCGGAGTGTTAAATCCGGGAACCAAGTTGTTGGAACCAAGAGAACGCTTGTATTT 360
Query 361 CATATCGGTCGGGCTCCTCGGGGCGAGAGAACCGAGTGGATTATGCATGAATACTGCATC 420
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 361 CATATCGGTCGGGCTCCTCGTGGCGAGAGAACGGAGTGGATTATGCATGAATACTGCATC 420
Query 421 CATGGCGCCCCACAGGATGCATTAGTGGTGTGCCGGTTAAGAAAAAATGCTGATTTTCGG 480
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CATGGAGCCCCACAGGATGCATTAGTGGTGTGCCGGTTAAGAAAAAATGCTGATTTTCGG 480
Query 481 GCTAGTTCGAGTCAAAAGCAAATGGAGGATGGTGTTGTGCAAGACGATGGCTACGTTGGC 540
|||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 481 GCTAGTTCGACCCAAAA--AA-TGGAGGATGGTGTTGTGCAAGACGATGGCTACGTTGGC 537
Query 541 CAAAGCGGTGGTTCGGAAAAGGAGGAGAAATCGTATTCTGTTTATGA---TCAGCTACCA 597
||||| ||||||| ||| |||||||| ||||| || | || | ||| |||| |||||
Sbjct 538 CAAAGAGGTGGTTTGGAGAAGGAGGACAAATCCTACTATGAATCTGAGCATCAGATACCA 597
Query 598 AATGGTGACATCGCAGAATCATCAAACGTTGTTGAGTATCAGGCCGATACCGATGATGAT 657
|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 598 AATGGTGACATCGCAGAATCATCAAATGTTGTTGAGGATCAGGCCGATACCGATGATGAT 657
Query 658 TGTTACGCCGAGATTCTAAACGATGATATAATAAAGCTCGATGAAGAAGCATTGAAAGCT 717
||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||
Sbjct 658 TGTTACGCCGAGATTCTGAACGATGATATAATAAAGCTCGACGAAGAAGCGTTGAAAGCT 717
Query 718 AGCCAAGCTTTTCGACAAATTAATCCAACTCATCAAGAAACAATATCCAGCGAGTCATCA 777
|||||||| ||||||| || ||||||||||||||||||||||||||| |||||||||||
Sbjct 718 AGCCAAGCGTTTCGACCAACTAATCCAACTCATCAAGAAACAATATCAAGCGAGTCATC- 776
Query 778 TCGAGTAAGAGGTCAAAATGTGGTATAAAAAAGGAATCAACGGAAACAATGAATTGTTAC 837
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 777 --GAGTAAGAGGTCAAAATGTGGTATAAAAAAAGAATCAACGGAAACAATGAATTGTTAC 834
Query 838 GCTTTGTTCAGGATAAAGAACGTTGCCGGAACCGACTCCAGCTGGAGATTCCCGAACCCG 897
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 GCTTTGTTCAGGATCAAGAACGTTGCCGGAACCGACTCCAGCTGGAGATTCCCGAACCCG 894
Query 898 TTCAACATCAAGAAAGATGATAGCCAGAGATTGATGAAGAATGTTCTGGCCACTACTGTT 957
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 TTCAAAATCAAGAAAGATGATAGCCAGAGATTGATGAAGAATGTTCTGGCCACTACTGTT 954
Query 958 TTCTTGGCTATCTTATTTTCT--CTTTTGGACTGTATTAATAGCTAG 1002
||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 955 TTCTTGGCTATCTTATTTTCTTTCTTTTGGACTGTATTAATAGCTAG 1001
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49078761619
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5