BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481639
Length=718
Score E
Sequences producing significant alignments: (Bits) Value
AT2G27385.1 | Symbols: | Pollen Ole e 1 allergen and extensin ... 1003 0.0
> AT2G27385.1 | Symbols: | Pollen Ole e 1 allergen and extensin
family protein | chr2:11716496-11717330 REVERSE LENGTH=735
Length=735
Score = 1003 bits (543), Expect = 0.0
Identities = 645/693 (93%), Gaps = 11/693 (2%)
Strand=Plus/Plus
Query 31 CAATGGCTTTGCGGTCACA-TTTCTTAGCTTTGTTCCTTTTCTCGGCAACTCTCTCATCT 89
||||||||||| ||||||| |||| ||||| ||||||||||||| |||||||||||||||
Sbjct 44 CAATGGCTTTGAGGTCACATTTTC-TAGCTGTGTTCCTTTTCTCAGCAACTCTCTCATCT 102
Query 90 TGCCTCGTGGTCTCGGCTTCCCTCGTCGAAGGAAAAGTCTCTTGTTTCGACTGTCCCAAT 149
|||||||| ||||||||||| ||||| ||||| |||||||||||||||||||||||||||
Sbjct 103 TGCCTCGTAGTCTCGGCTTCGCTCGTGGAAGGGAAAGTCTCTTGTTTCGACTGTCCCAAT 162
Query 150 GATTATGATTATTCAGGAATCATGGTCGGTGTTAGCTGTAGCCACACCAAA-ACGCATTT 208
|||||||||||||||||||||| |||||| |||||||||||||||| |||| |||| ||
Sbjct 163 GATTATGATTATTCAGGAATCACGGTCGGAGTTAGCTGTAGCCACA-CAAACACGCGGTT 221
Query 209 CACCGTAACAACCGACAAGAAGGGTGAGTTCATGTCGAAACTTCCCTCAAGGATCGAATC 268
||| |||||||| |||||||||||||| ||||| ||| |||||||||||| |||||||||
Sbjct 222 CACTGTAACAACTGACAAGAAGGGTGACTTCATATCGGAACTTCCCTCAAAGATCGAATC 281
Query 269 AAACTGTGAAGCAGAACTCCAAGGCAGCTTCAAGCAACTTTATGCTTCCAAGAATAACAT 328
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 282 AAACTGTGAAGCAGAACTCCAAGGCAGCGTCAAGCAACTTTATGCTTCCAAGAATAACGT 341
Query 329 TAAGTCGAAGATTGTTAAGCTTGATGGTGATAAATACGGTCTCTCTTCAAAGTTGATCTT 388
||||||||||||||||||||||| ||||| ||||| ||||||||||| |||||| ||||
Sbjct 342 TAAGTCGAAGATTGTTAAGCTTGGCGGTGACAAATATGGTCTCTCTTCCAAGTTGTTCTT 401
Query 389 CTTGAAATCATGTCCAAGAAGCCTCGGATCTTTTGGTTCGTCCAAGACCGTTGATTTACC 448
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 402 CTTGAAATCATGTCCAAGAAGCTTCGGATCTTTTAGTTCGTCCAAGACCGTTGATTTACC 461
Query 449 TGTTCCTCCCGAGTGGGGGCTGGCTCCGACCAGTTATTACGTTCCTTTCTTTCCCATCAT 508
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 462 AGTTCCTCCCGAGTGGGGGCTGGCTCCGACCAGTTATTACGTTCCTTTCTTGCCCATCAT 521
Query 509 CGGTATCCCATAAGACACAGTACTGTTTTAATCCTTGTTTTGTGTGTTTCATGTAATATA 568
||||||||||| || || | || ||||||||||||||||||||||||| ||||||||||
Sbjct 522 CGGTATCCCAT--GATAC-GCACCGTTTTAATCCTTGTTTTGTGTGTTTTATGTAATATA 578
Query 569 TT-AATATTATGTAAGTGTAGAGGACATGTAACTATCTTAGCTGTTCTTTTCAAGTCCAT 627
|| || ||||| || ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 579 TTCAA-ATTATATATGTGTAGAGGACATGTAACTATCTTAGCTGTTCTTTTCAAGTTCAT 637
Query 628 GCTTGAACTGAAGTTTGTGTGTGATCTTAGTGTCTGAAGATGGTTTATGTTGTGACCC-T 686
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 638 GCTTGAACTGAAGTTTGTGTGTGAACTTAGTGTCTGAAGATGGTTTATGTTGTGACCCAT 697
Query 687 TTATGAAGCATAATTT-AATATGAAATCTGTTA 718
|||||||||||||||| ||||||||||||||||
Sbjct 698 TTATGAAGCATAATTTTAATATGAAATCTGTTA 730
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34812263871
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5