BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481640
Length=1259
Score E
Sequences producing significant alignments: (Bits) Value
AT2G27420.1 | Symbols: | Cysteine proteinases superfamily prot... 1901 0.0
AT2G27395.1 | Symbols: | pseudogene of cysteine protease-relat... 335 7e-91
> AT2G27420.1 | Symbols: | Cysteine proteinases superfamily protein
| chr2:11726144-11727614 REVERSE LENGTH=1309
Length=1309
Score = 1901 bits (1029), Expect = 0.0
Identities = 1176/1245 (94%), Gaps = 17/1245 (1%)
Strand=Plus/Plus
Query 1 AACCAAAACATTTGTATTAAAAGAGTATTTTTATTGATACTATATTTAAATTGTGCCCAT 60
||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 18 AACCAAAACATTTGTATTATAAGAGTATTTTTATTGATACTATTTTTAAATTGTGCCCA- 76
Query 61 TCATTTCCATACTATTACCTCTA-GGAATGTCGTCAACTATCATCTTCATTCTAACTAtt 119
| | | | |||||||| || |||||| |||||||||||||||||||||||||||||
Sbjct 77 T-A----C--A-TATTACCTATAGGGAATGGCGTCAACTATCATCTTCATTCTAACTATT 128
Query 120 tttttGAGTTACAGAACTTCGCTAGTTACATCTCGTGGTGGCCTTTTTGAAGCTTCTGCC 179
||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 129 TTTTTAAGTTACAGAACTTCGCTAGCTACATCTCGTGGTAGCCTTTTTGAAGCTTCTGCC 188
Query 180 ATTGAGAAACATGAGCAATGGATGGCTCGATTCAATCGCGTTTACTCTGACGAATCCGAG 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 189 ATTGAGAAACATGAGCAATGGATGGCTCGATTCAATCGCGTTTACTCTGACGAAACCGAG 248
Query 240 AAAAGAAATCGGTTCGATATCTTCAAGAAGAATTTGGAGTTCGTCCAGAGCTTCAACATG 299
|||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 249 AAAAGAAATCGGTTTAATATCTTCAAGAAGAATTTGGAGTTCGTCCAGAACTTCAACATG 308
Query 300 AATAAGAACATCACGTACAA-GTTGGATGTCAACGAGTTCTCTGATCTCACTGACGAAGA 358
||||| || ||||||||||| ||| ||| ||||||||||||||||||| || ||||||||
Sbjct 309 AATAATAAAATCACGTACAAGGTT-GATATCAACGAGTTCTCTGATCTTACGGACGAAGA 367
Query 359 ATTTCGGGCGACACACACTGGACTAGTTGTGCCCGAGGAAATAA-CAGGAATTTCAACTC 417
|||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||
Sbjct 368 ATTTCGGGCGACACACACTGGACTAGTTGTGCCCGAGGCTATAACCA-GAATTTCAACTC 426
Query 418 TGTCTTC-GG-ATAAA-ACGGTGCCGTTTAGATATCGTAATGTTAGTGATACTGGCGAAA 474
||||||| || | ||| |||||||||||||||||| ||||||||||||||| |||||| |
Sbjct 427 TGTCTTCGGGCAAAAACACGGTGCCGTTTAGATATGGTAATGTTAGTGATAATGGCGAGA 486
Query 475 GCATGGATTGGAGACAAGAGGGGGCTGTTACACCCGTTAAGTATCAAGGCCGATGTGGAG 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 487 GCATGGATTGGAGACAAGAGGGGGCTGTTACACCCGTTAAGTATCAAGGCCGATGTGGAG 546
Query 535 GATGCTGGGCGTTTTCTGCGGTGGCGGCGGTGGAAGGCATTACAAAGATTACTAAAGGCG 594
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 547 GATGCTGGGCGTTTTCCGCGGTGGCGGCAGTGGAAGGCATTACAAAGATTACTAAAGGCG 606
Query 595 AGCTTGTATCGCTATCGGAGCAACAACTCTTAGACTGTGACAGAGACTACAATCAAGGAT 654
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 607 AGCTTGTATCGCTATCGGAGCAACAACTCTTAGACTGCGACAGAGACTACAATCAAGGAT 666
Query 655 GTCATGGAGGGATAATGTCTAAAGCTTTCGAGTACATAATCAAAAACCAAGGCATCACTA 714
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 667 GTCGTGGAGGGATAATGTCGAAAGCTTTCGAGTACATAATCAAAAACCAAGGCATCACTA 726
Query 715 CTGAGGATAACTATCCATATCAAGAATCACAACAAACTTGTAGTTCTTCAACTACCCTAT 774
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 727 CTGAGGATAACTATCCATACCAAGAATCACAACAAACTTGTAGTTCATCAACTACCCTAT 786
Query 775 CATCGTCTTTCCGTGCTGCTACAATCAGCGGATATGAGACAGTTCCAATGAATAATGAGG 834
|||||||||| ||||| || |||||||||||||||||||| |||||||||||||||||||
Sbjct 787 CATCGTCTTTTCGTGCAGCCACAATCAGCGGATATGAGACCGTTCCAATGAATAATGAGG 846
Query 835 AAGCGTTGCTACAAGCGGTGTCTCAACAGCCTGTTTCCGTGGGGATAGAAGGGACAGGAG 894
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
Sbjct 847 AAGCGTTGCTACAAGCAGTGTCTCAACAGCCTGTTTCTGTGGGGATAGAAGGGACAGGGG 906
Query 895 CCGCGTTTAGGCACTACTCGGGCGGGATATTCAATGGAGAATGTGGGACGGATTTGCATC 954
|||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||
Sbjct 907 CCGCGTTTAGGCACTACTCGGGAGGGGTATTCAACGGAGAATGTGGGACGGATTTGCATC 966
Query 955 ATGCGGTCACGATTGTTGGTTATGGTATGAGTGAAGAAGGGACTAAGTATTGGGTGGTGA 1014
||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 967 ATGCGGTTACAATTGTTGGTTATGGAATGAGTGAAGAAGGGACTAAGTATTGGGTGGTGA 1026
Query 1015 AGAATTCTTGGGGGGAAACTTGGGGAGAGGATGGTTTCATGAGGATCAAGAGAGACGTGG 1074
|||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 1027 AGAATTCTTGGGGGGAAACTTGGGGAGAAAATGGTTACATGAGGATCAAGAGAGACGTGG 1086
Query 1075 ATGCACCCCAAGGAATGTGTGGTTTGGCCATGCTTGCTTTCTATCCACTTGCTTGAATAC 1134
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1087 ATGCACCCCAAGGAATGTGTGGTTTGGCCATTCTTGCTTTCTATCCACTTGCTTGAATAC 1146
Query 1135 ATGAAGATTGATTGGGTGGGCTTGAAGTAATTGAAAATACGCTGATCAAAATGTTATTTT 1194
||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||
Sbjct 1147 ATGAAGATTGATTGGGTGGGCTTGAAGTAGTTGAAAGTATTCTGATCAAAATGTTATTTT 1206
Query 1195 AAGAAACATTATGGTCCCCATGTTTTTGTGCAAATGGATTGATAT 1239
||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1207 GAGAAACATTATGGTCCCCATGTTTTCGTGCAAATGGATTGATAT 1251
> AT2G27395.1 | Symbols: | pseudogene of cysteine protease-related
| chr2:11721051-11721324 REVERSE LENGTH=274
Length=274
Score = 335 bits (181), Expect = 7e-91
Identities = 244/272 (90%), Gaps = 13/272 (5%)
Strand=Plus/Plus
Query 822 ATGAATAATGAGGAAGCGTTGCTACAAGCGGTGTCTCAACAGCCTGTTTCCGTGGGGATA 881
||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||
Sbjct 1 ATGAATAATGAGGAAGCGTTGGTACAAGCGGTGTCTCAACATCCTGTTTCCATGGGGATA 60
Query 882 GAAGGGACAGGAGCCGCGTTTAGGCACTACTCGGGCGGGATATTCAATGGAGAATGTGGG 941
|| ||||||||||| |||||||||||||||||||| ||||||||||| |||||||||| |
Sbjct 61 GAGGGGACAGGAGCTGCGTTTAGGCACTACTCGGGAGGGATATTCAACGGAGAATGTGAG 120
Query 942 ACGGA-TTTGCATCATGCGGTCACGATTGTTGGTTATGGTATGAGTGAAGAAGGGACTAA 1000
||||| ||||||||||||||| || ||||||||||||| |||||||||||||| |||||
Sbjct 121 ACGGATTTTGCATCATGCGGTTACAATTGTTGGTTATGAAATGAGTGAAGAAGGAACTAA 180
Query 1001 GTATTGGGTGGTGAAGAATTCTTGGGGGGAAACTTGGGGAGAGGATGGTTTCATGAGGAT 1060
||||||| ||||||||||||||| |||| | || | ||||||||||||||||
Sbjct 181 GTATTGGATGGTGAAGAATTCTT--GGGG--A------GA-A-AATGGTTTCATGAGGAT 228
Query 1061 CAAGAGAGACGTGGATGCACCCCAAGGAATGT 1092
||||||||||||||||||||||||||||||||
Sbjct 229 CAAGAGAGACGTGGATGCACCCCAAGGAATGT 260
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61897271985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5