BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481642
Length=1398
Score E
Sequences producing significant alignments: (Bits) Value
AT2G27430.1 | Symbols: | ARM repeat superfamily protein | chr2... 2111 0.0
> AT2G27430.1 | Symbols: | ARM repeat superfamily protein | chr2:11729826-11733210
REVERSE LENGTH=1445
Length=1445
Score = 2111 bits (1143), Expect = 0.0
Identities = 1316/1400 (94%), Gaps = 10/1400 (1%)
Strand=Plus/Plus
Query 1 GTCCACTAAAAGAAACAGAACATCACATCATCTATCCATTATGTCTTCCTCTCGAACACA 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1 GTCCACTAAAAGAAACAGAACATCAAATCATCTATCCATTATGTCTTCCTCTCGAACACA 60
Query 61 ACCCTCTTCGTCTTCTTCTTCAGTTTGGCAACTCCAATACATGAAGCTCCACTTTTTCAC 120
| || | ||||||||||||||||||||||| ||||||||||||||| |||| |||||
Sbjct 61 A---TC--C-TCTTCTTCTTCAGTTTGGCAACTTCAATACATGAAGCTCAACTTCTTCAC 114
Query 121 AAAGATTCGTTGCCTTTTGAAATCCAAAGCAT-CTTCCCGCAAACGAAATCTTCAAGCCT 179
||||||||| |||||||||||||||||||||| ||| ||||||| | ||||||||||| |
Sbjct 115 AAAGATTCGATGCCTTTTGAAATCCAAAGCATCCTT-CCGCAAAAGTAATCTTCAAGCGT 173
Query 180 TACCAGAGAAATCAAGAACCTATCAAGATTCCGAGAAAGTGGCGGCGCTTCCGGAAGCAA 239
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||
Sbjct 174 TACCAGAGAAATCAAGAACCTATCAAGATTTCGAGAAGGTGGCGGCGCTTCCGGAAGAAA 233
Query 240 TAGTACT-AAAGCTACCAGAAGATGAGAATGAGGAGGTTGTGTTACAGAAAACTGTGAAG 298
| ||| | ||||| ||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 234 TTGTA-TCAAAGCCACCAGAAGATGAGAATGAGGAGGTTGTGTTACAAAAAACTGTAAAG 292
Query 299 AAGCTTCACTTTGGAAGCTGGGAAGAGAAGGAAAAAGCTGCCATCGAGATCGAGAAACTT 358
||| | ||||| |||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 293 AAGATCCACTTCGGAAGCTGGGAAGAGAAGGAGAAAGCTGCCATAGAGATCGAGAAACTT 352
Query 359 GCCCGAGAAGATAAGAAGACTCGGAAGCTCATGGCTGAGCTCGGTGTTCTTCAAGTTCTT 418
||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||
Sbjct 353 GCCCGAGAAGATAAGAAGACTCGGAAGCTCATGGCTGAGCTAGGTGTTATTCAAATTCTT 412
Query 419 GTTTATATGGTCGCTTCCGATGTTTCCGGCCATCAGAAAGCTGCTGTCAATGCGCTTATT 478
|||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 413 GTTTCTATGGTCGCTTCCGATGTTTCCGGCCATCAGAAAGCTGCCGTCAATGCTCTTATT 472
Query 479 CAGCTTTCTCATGGAACCTACACGAACAAGGCGCTGATGGTGAACGCCGATATATGCTCA 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 473 CAGCTTTCTCATGGAACCTACACGAACAAGGCGCTGATGGTGAACGCCGATATATGCTCA 532
Query 539 AAGCTACCCAAAAATGTCGAAGTTCTCGACCAATCAACAAGACATGGCTTTGCGGAGCTT 598
||||| ||||||||||| |||||||||||||||||||||||||||| |||||| ||||||
Sbjct 533 AAGCTTCCCAAAAATGTTGAAGTTCTCGACCAATCAACAAGACATGCCTTTGCCGAGCTT 592
Query 599 CTGCTTTCACTGTCTTCTCTAACAAACACACAATTACCAGTAGCTTCATCACAGATTCTA 658
||||||||| |||| |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 593 CTGCTTTCATTGTCATCTCTAACCAACACACAATTACCAGTAGCTTCATCACAAATTCTA 652
Query 659 CCGTTCTTAATGGACACAATGAACTCAGATTCAACAGACATGAAAATAAAAGAGATTTGT 718
||||||||||||||||| ||||| |||||||||||||| ||||| | |||||||| |||
Sbjct 653 CCGTTCTTAATGGACACGATGAATTCAGATTCAACAGATATGAAGACCAAAGAGATATGT 712
Query 719 CTAGCCACCATAAGCAATCTCTGCCTCGTGTTGGAAAACGCAGGACCATTGGTCTTGAAC 778
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 713 CTAGCCACCATAAGCAATCTCTGCCTTGTGTTGGAAAACGCAGGACCTTTGGTCTTGAAC 772
Query 779 GGGGCAGTGCAAACACTCCTAAGGCTAATGTCAGCTAAAGACTTGTCCGAGAAGGCACTA 838
||||||||| | ||||||||||| ||||||||| ||||||||||||| ||||||||||||
Sbjct 773 GGGGCAGTGGAGACACTCCTAAGCCTAATGTCAACTAAAGACTTGTCTGAGAAGGCACTA 832
Query 839 GCGAGTCTAGGGCAATTGGTGGTAACTCAAATGGGTAAAAAAGCAATGGAGGATTGTTTG 898
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 833 GCGAGTCTAGGGAAATTGGTGGTGACTCAAATGGGTAAAAAAGCAATGGAGGATTGTTTG 892
Query 899 ATTGTGCCCAAAGGTTTGATAGAGATTCTAACATGGGAAGATAAACCGAAATGCCAAGAA 958
||||| | |||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 893 CTTGTGTCTAAAGGTTTAATAGAGATTCTAACATGGGAAGATATACCGAAATGCCAAGAA 952
Query 959 TACTCAGTGTATATCTTGATGGTATTAGCTCATCAGAGTTGGAGCCAGCGCGAGAAAATG 1018
||| | | |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 953 TACGCGGCGTATATCTTGATGGTATTAGCTCATCAGAGTTGGAGCCAGCGTGAGAAAATG 1012
Query 1019 GCTAAGGTAGGGATTGTGCCGGTCCTTCTTGAAGTGAGCTTACTTGGGAGCCCTCTGGTT 1078
|| |||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1013 GCCAAGGCAGGGATTGTGCCGGTTCTTCTTGAAGTGAGCTTACTTGGGAGTCCTCTGGTT 1072
Query 1079 CAAAAGAGGGCAGTGAAACTATTGCAGTGGTTCAAGGATGAGAGAAATGTACGGATGGGT 1138
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1073 CAAAAGAGGGCAGTGAAACTTTTGCAATGGTTCAAGGATGAGAGAAATGTACGGATGGGT 1132
Query 1139 CCTCATTCGGGTCCACAAACGGGTTGGATGAGTCCTGGGATGGGATCTCCAATGAGCCCG 1198
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1133 CCTCATTCGGGTCCACAAACGGGTTGGGTGAGTCCTGGGATGGGATCTCCAATGAGCCCG 1192
Query 1199 AGGTCAGGGGAAGAAGGTAGGAAGATGATGAAGAATCTAGTGAAACAGAGTTTGTACAAG 1258
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1193 AGGTCAGGGGAAGAAGGTAGGAAGATGATGAAGAATCTGGTGAAACAGAGTTTATACAAG 1252
Query 1259 AACATGGAGATGATAACTCGACGAGGGAATGTGGATATGGAGAGTGAAAGTTGTAGGCTT 1318
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1253 AACATGGAGATGATAACTCGACGAGGGAATTTGGATATGGAGAGTGAAAGTTGTAGGCTT 1312
Query 1319 AAGTCTTTGATCATCAGCACTAGCTCCAAAAGCTTGACTTATTGATCTTTATTTTGTGTT 1378
|||||||||||||||||||| ||||| ||||| ||||||||||||||||| |||||||||
Sbjct 1313 AAGTCTTTGATCATCAGCACAAGCTCTAAAAGTTTGACTTATTGATCTTTGTTTTGTGTT 1372
Query 1379 CTGACATTGCCATATAAAGT 1398
|||||||||||||||||||
Sbjct 1373 ATGACATTGCCATATAAAGT 1392
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68875147740
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5