BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481644
Length=1190
Score E
Sequences producing significant alignments: (Bits) Value
AT2G27450.2 | Symbols: NLP1, ATNLP1, CPA | nitrilase-like prote... 1744 0.0
> AT2G27450.2 | Symbols: NLP1, ATNLP1, CPA | nitrilase-like protein
1 | chr2:11737432-11739598 REVERSE LENGTH=1236
Length=1236
Score = 1744 bits (944), Expect = 0.0
Identities = 1102/1176 (94%), Gaps = 20/1176 (2%)
Strand=Plus/Plus
Query 1 ACAGAGAAAGAGAGGGAAACCATGGAAATGCAAGGAAGAAGACGAGAAGTAGTTGTGTCA 60
|||||||||||||| ||||| ||||||| | ||||||||||||||||||| ||||| |||
Sbjct 1 ACAGAGAAAGAGAGAGAAACAATGGAAACGGAAGGAAGAAGACGAGAAGTGGTTGTTTCA 60
Query 61 TCTCTTCAATTCGCTTGCTCCGACGATATCTCCACCAATGTCGCCGCCGCTGAGCGATTA 120
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 61 TCTCTCCAATTCGCTTGCTCCGACGATATCTCCACCAATGTCGCCGCCGCTGAGCGGTTC 120
Query 121 G------tctc-t-ct--ctccctctctctgactatcaatctctctcatcttcctcctcc 170
| |||| | || |||||||||||| | |||||||||||| ||||||||||||||
Sbjct 121 GTCTCTCTCTCTTCCTCCCTCCCTCTCTCTAATTATCAATCTCTCCCATCTTCCTCCTCC 180
Query 171 tTGTAATTTTC--ATGTATTAGTCAGAGAAGCTCACGCTAAAGGAGCTAATATCATTCTC 228
|| ||||| | ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTCAAATTTCCATATGCATTAGTCAGAGAAGCTCACGCTAAAGGAGCTAATATCATTCTT 240
Query 229 ATTCAGGAACTTTTTGAAGGATATTACTTCTGTCAAGCGCAAAGAGAGGATTTCTTTAAG 288
|||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||
Sbjct 241 ATTCAGGAACTTTTTGAAGGATATTACTTCTGTCAAGCACAAAGAGAAGACTTCTTTAAG 300
Query 289 CGAGCCAAGCCTTACAAGAACCATCCTACAATTGCAAGGATGCAGAAGCTGGCAAAGGAA 348
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 301 CGAGCCAAGCCTTACAAGAACCATCCTACCATTGCAAGGATGCAGAAGCTGGCAAAGGAA 360
Query 349 TTGGGTGTAGTGATACCTGTTAGCTTCTTTGAGGAGGCAAATGCTGCACATTACAATTCG 408
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 361 TTGGGTGTAGTGATACCTGTTAGTTTCTTTGAGGAGGCAAATACTGCACATTACAATTCG 420
Query 409 ATAGCCATAATTGATGCTGATGGAACTGACCTT-GGAATTTATAGGAAGTCTCATATTCC 467
|| || ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 421 ATTGCTATAATTGATGCTGATGGAACTGA-CTTGGGAATTTATAGGAAGTCTCATATTCC 479
Query 468 TGATGGACCAGGGTATCAAGAGAAGTTTTATTTCAATCCTGGAGACACTGGCTTTAAGGT 527
||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 480 TGATGGACCTGGTTATCAAGAGAAGTTTTATTTCAATCCTGGAGATACTGGCTTTAAGGT 539
Query 528 TTTCCAGACAAAGTTTGCAAAAATTGGAGTGGCTATATGTTGGGATCAGTGGTTTCCTGA 587
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TTTCCAGACGAAGTTTGCTAAAATTGGAGTGGCTATATGTTGGGATCAGTGGTTTCCTGA 599
Query 588 GGCAGCTCGAGCTATGGTTCTACAGGGTGCTGAAATACTGTTTTATCCCACTGCTATTGG 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GGCAGCTCGAGCTATGGTTCTACAGGGTGCTGAAATACTGTTTTATCCCACTGCTATTGG 659
Query 648 TTCTGAACCTCAAGACCAGGGATTGGATTCACGTGATCATTGGAGGAGAGTTATGCAAGG 707
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 660 TTCTGAACCTCAAGACCAGGGATTGGATTCGCGTGATCATTGGAGGAGAGTTATGCAAGG 719
Query 708 GCATGCTGGGGCTAACGTGGTGCCTCTAGTCGCTTCAAATCGCATAGGGAAGGAAGTAAT 767
||||||||| ||||||||||| |||||||| || ||||||||||||||||||||| ||||
Sbjct 720 GCATGCTGGAGCTAACGTGGTACCTCTAGTAGCCTCAAATCGCATAGGGAAGGAAATAAT 779
Query 768 TGAAACTGAGCATGGACCAAGTCAAATCACTTTCTACGGAACTTCCTTCATTGCCGGGCC 827
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||
Sbjct 780 TGAAACTGAGCATGGACCTAGTCAGATCACTTTCTACGGAACTTCCTTCATTGCCGGACC 839
Query 828 AACAGGTGAAATTGTGGCTGAGGCAGATGATAAATCGGAAGCCGTTCTCGTGGCACAGTT 887
|||||||||||||||||| ||||||||||||||||||||||| ||||| || ||||||||
Sbjct 840 AACAGGTGAAATTGTGGCCGAGGCAGATGATAAATCGGAAGCTGTTCTTGTAGCACAGTT 899
Query 888 TGATCTTGAGATGATCAAGTCGAAAAGGCAAAGCTGGGGTGTGTTCCGTGACCGTCGTCC 947
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 900 TGATCTTGATATGATCAAGTCGAAAAGGCAAAGCTGGGGAGTGTTCCGTGACCGTCGTCC 959
Query 948 AGATTTGTACAAGGTGCTTCTTACTATGGATGGTAATCTCTAAATCTTTTGCTGTTTGAA 1007
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 960 AGATTTGTACAAGGTGCTTCTTACTATGGATGGTAATCTCTAAATCTTTTGCTGTTGGAA 1019
Query 1008 GCTTTGATCTTTTGGTTAAGATCACACTGAGGAAATCCATTTAACAACAACTATTACTGG 1067
|||||||||||||| |||||||||||||| ||||||||||| |||||||| |||||||||
Sbjct 1020 GCTTTGATCTTTTGTTTAAGATCACACTGGGGAAATCCATT-AACAACAATTATTACTGG 1078
Query 1068 CTTAATCTTAAAGGGTAAG----CCCAAAAATAAAAGACCAGAAAATGGTTTAATACATC 1123
||||| ||||||||||||| ||||||||||||||||||||||| | |||||||||||
Sbjct 1079 CTTAACCTTAAAGGGTAAGTAAGCCCAAAAATAAAAGACCAGAAAAAG-TTTAATACATC 1137
Query 1124 TCAAAATTTGCTGTGGCTCTTTCATCTTTCTAGGTT 1159
|||||||||| | |||| ||||||||||||||||||
Sbjct 1138 TCAAAATTTGTTCTGGCACTTTCATCTTTCTAGGTT 1173
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58433434380
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5