BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481646
Length=2388
Score E
Sequences producing significant alignments: (Bits) Value
AT2G27460.1 | Symbols: | sec23/sec24 transport family protein ... 3917 0.0
> AT2G27460.1 | Symbols: | sec23/sec24 transport family protein
| chr2:11740634-11745011 FORWARD LENGTH=2418
Length=2418
Score = 3917 bits (2121), Expect = 0.0
Identities = 2302/2391 (96%), Gaps = 5/2391 (0%)
Strand=Plus/Plus
Query 1 ATCTGAAGCAATGGCCGTGAGAGCAACGGTGTCGCGTTTTCCGATCGATGCAGACGCTCA 60
||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 27 ATCTGAAACAATGGCAGTGAGAGCAACGGTGTCGCGTTTTCCGATCGATTCAGACGCTCA 86
Query 61 AGAGGCGTCAGGACTTCCTTGGGGACTAACAGTAACACCATTCGCGGCTAAAGACGAGAA 120
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 87 AGAGGCGTCAGGACTTCCTTGGGGACTGACAGTAACACCATTCGCGGCCAAAGACGAGAA 146
Query 121 CGAAATCGGACCAGCGTACGGATCTAACGGTCATCTTCTTCCTCGTTGCGAAAACTGCTA 180
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 147 CGGAATCGGACCAGCGTGCGGATCTAACGGTCATCTTCTTCCTCGTTGCGAAAACTGCTA 206
Query 181 CGCTTACTTCAATACCTACTGTGAGCTTGATCAATGGGCTTGGAATTGCTCGCTTTGTGG 240
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 207 CGCTTACTTCAATACCTATTGTGAGCTTGATCAATGGGCTTGGAATTGCTCGCTTTGTGG 266
Query 241 AACTCTCAATGGACTTCCTTCTGATGCTATTGCTCGTTACTCTAATCCTCAGTCTATACC 300
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 267 AACTCTCAATGGACTTCCTTCTGATGCTATTGCTCGTTACTCTAATCCTCACTCTATACC 326
Query 301 TGAAATGACTTCTTCCTTCATTGATCTTGAAATGCCTCTGGATGGATCGGAGGAAGAGAT 360
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 327 TGAAATGACTTCCTCCTTCATTGATCTTGAGATGCCTCTGGATGGATCGGAGGAAGAGAT 386
Query 361 GACTCAAGCACGGCCTGTGTATGTTGCGGCGATTGATATCTCGTCTTCCGAGGAATTTTT 420
||| |||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 387 GACGCAAGCACGACCTGTGTATGTTGCGGCGATTGATATCTCTTCTTCTGAGGAATTTTT 446
Query 421 GGAACTTACAAAAAGTGCATTGCTAGCCGCTCTGGAAGCTCTAAGTCCAGGGGCTCTTTT 480
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 447 GGAGCTTACAAAAAGTGCATTGCTAGCCGCTCTGGAAGCTCTAAGTCCAGGGGCTCTTTT 506
Query 481 CGGTCTTGTAACGTTCAGCCACAAAATAGGACTGTATGATGTTCAAGGACCTATACCGGT 540
|||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 507 TGGTCTTGTTACGTTCAGTCACAAAATAGGACTGTATGATGTTCAAGGACCTATACCAGT 566
Query 541 TGTAAAGAATGTATTCATTCCCCCTGATGGGGAGAGTAGCTTATCGCTAGAACTTGAGGA 600
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 567 TGTAAAGAATGTATTCATTCCCCCTGATGGGGAGAGCAGCTTATCGCTAGAACTTGAGGA 626
Query 601 TGTCATGCCCTTGTTACAATTTTTGGCTCCGGTAGAAACTTGCAAGGATCGTATTGCTGC 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 627 TGTCATGCCCTTGTTACAATTTTTGGCTCCGGTAGAAACTTGCAAGGATCGTATTGCTGC 686
Query 661 AGCTCTTGAGACACTCAGACCAATAACTTCTTGGGAGAGATCAGCTGGTGCAGCTCAAGG 720
|| |||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||
Sbjct 687 TGCACTTGAGACACTCAGACCAATTACTTCTTGGGAGAGATCAGCTGGAGCAGGTCAAGG 746
Query 721 GATGGATAGTGTATTGATGGGTGGTAGGGGATTTGGTACAGCTATGGAAGCTCTATTCAA 780
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 747 GATGGATAGTGTGTTGATGGGTGGTAGGGGCTTTGGTACAGCTATGGAAGCTCTATTCAA 806
Query 781 CTATCTAGTATCTGAATTTGGGAATACATTTGCATTAGCTAGGGTGTTTGCTTTCCTATC 840
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 807 CTATCTAGGATCTGAATTTGGGAATACATTTGCATTAGCTAGGGTGTTTGCTTTCCTATC 866
Query 841 TGGTCCTCCTGATTATGGACGTGGACAACTGGATACAAGTAGATATGGTGAACAATATGC 900
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 867 TGGTCCTCCTGATTATGGACGTGGACAATTGGATACAAGTAGATATGGTGAACAATATGC 926
Query 901 AAGTAAAAGGGTAGATGCTGATCGTGCTCTGCTTCCTGAACAAACACCATTCTACAAAGA 960
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 927 AAGTAAAAGGGTAGATGCTGATCGTGCTCTACTTCCTGAACAAACACCATTCTACAAAGA 986
Query 961 CCTAGCCACCATTGCTGTCCAGTCTGGTGTATGTGTAGATTTATTCGCAGTTACAAATGA 1020
||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||
Sbjct 987 CCTAGCCACCATTGCTGTCCAATCAGGTGTATGTGTAGATTTATTTGCAGTTACAAATGA 1046
Query 1021 GTACACAGATTTAGCATCCCTGAAGTTCCTTAGCATCGAAAGTGGTGGCTCGCTGTTTTT 1080
|||||||||||||||||||||||||||||||||||| |||||||| || || ||||||||
Sbjct 1047 GTACACAGATTTAGCATCCCTGAAGTTCCTTAGCATTGAAAGTGGCGGTTCACTGTTTTT 1106
Query 1081 GTATTCAAGCACCGATGATTCAACTCTTCCCCAAGACATGTTTCGAATGCTTAACCGGCC 1140
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1107 GTATTCAAGCACTGATGATTCAACTCTTCCCCAAGACATGTTTCGAATGCTTAACCGGCC 1166
Query 1141 GTATGCATTCAATTGTGTCTTGCGATTGAGGACATCAACTGAATTCAAACCTGGCAACTC 1200
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 1167 GTATGCATTCAATTGTGTCTTGAGATTGAGGACGTCAACTGAATTCAAACCTGGCAACTC 1226
Query 1201 TTTTGGTCACTTCTTTCCAGATCCACAGTACGAGAACCTTCAGCATATTATCTGCTGTGA 1260
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1227 TTTTGGTCACTTCTTTCCAGATCCACAGTACGAGAACCTTCAGCATATCATCTGCTGTGA 1286
Query 1261 TTCATATGCAACATATGCATATGACTTTGATTTTGCAGATAATTCTGGATTTTCCAGGCA 1320
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1287 TTCATATGCAACATATGCATATGACTTTGAATTTGCAGATAACACTGGATTTTCCAGGCA 1346
Query 1321 TTCTGGAGAGCAACCAGTGGTGCAAATTGCATTTCAGTACTCAGTTGTTGTACCTCCCGA 1380
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1347 TTCTGGAGAGCAACCAGTGGTGCAAATTGCATTTCAGTACACAGTTGTTGTACCTCCCGA 1406
Query 1381 GGGACTGTCAAATTCAGAAATGTCATCTTCAAGTAGAGGCAAACACACACTTCAGAGACG 1440
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1407 GGGACTGTCAAATTCAGAAATGTCATCTTCAAGTAGAGGCAAGCACACACTTCAGAGACG 1466
Query 1441 ATTAAGGATCAGAACCATGCAATTTGGAACTGCCCACAACATCAATGAAATTTATGACAG 1500
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1467 ATTAAGGATCAGAACCATGCAATTTGGAACTGCCCACAATATCAATGAAATTTACGACAG 1526
Query 1501 TGTGGATCATGAAGTAGTTCTCTCATTGCTCGTTCACAAGGTAATTTTAGCCTCTCTGGA 1560
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1527 TGTGGATCATGAAGTTGTTCTCTCATTGCTCGTTCACAAGGTAATTTTAGCCTCTCTGGA 1586
Query 1561 AGATGGAGTCCGTGAAGGGAGGGCATTACTCCATGATTGGCTAGTAATTCTAACAGCACA 1620
|||||||||| | |||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1587 AGATGGAGTCAGAGAAGGGAGGGCATTGCTGCATGATTGGCTAGTAATTCTAACAGCACA 1646
Query 1621 ATACAACGATGCCTTCAATCTCGTTCAATACAAAAACGGAAACAATTCGATGAGTTCTCA 1680
||||||||||||||| || || || ||||||||||||||||| || || |||||||||||
Sbjct 1647 ATACAACGATGCCTTTAACCTTGTCCAATACAAAAACGGAAATAAGTCAATGAGTTCTCA 1706
Query 1681 GATTGATATCACTTTTTCACAATGTCCTCAACTTGAGCCTTTGCCTCGTTTAGTCTTTGC 1740
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1707 GATTGATATCACGTTTTCACAATGTCCTCAACTTGAGCCTTTGCCTCGTTTAGTCTTTGC 1766
Query 1741 CTTACTCCGTAATCCCCTTCTCCGGTTTCATGAAGAAGGTGTTCATCCTGATTACAGAAT 1800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1767 CTTACTCCGTAATCCCCTTCTCCGGTTTCATGAAGAAGGTGTTCATCCTGATTACAGAAT 1826
Query 1801 CTACTTGCAATGCCTTTTCAGCGTGTTGGACCCGAGCTCTCTTCATTGCGGGATTTACCC 1860
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1827 CTACTTGCAATGCCTTTTCAGTGTGTTGGACCCGAGCTCTCTTCATTGCGGCATTTACCC 1886
Query 1861 AGCACTAATGTCATATTCAACACCAGATACACTGGCATATCCGCGTCATTCATTGAGCCG 1920
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1887 AGCACTAATGTCATATTCAACACCGGATACACTGGCATATCCGCGTCATTCGTTGAGCCG 1946
Query 1921 CGCGGCTTTGATTACAAGTGGTAGTCCAATATTTTTCCTAGATGCATATACCACTTTGAT 1980
|| || ||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1947 TGCAGCATTGATAACAAGTGGTAGTCCGATATTTTTCCTAGATGCATATACCACTTTGAT 2006
Query 1981 AGTCTTCTACTCATCAACTGCAGACCCGTCGATACCTTTCCCTCCACCTCAAGACTGTTT 2040
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 2007 AGTCTTCTACTCATCAACAGCAGACCCGTCAATACCTTTCCCTCCACCTCAAGACTGTTT 2066
Query 2041 ATTGAGGCAGACCATAAATAAGGTGAAGCAAGAAAGGAGCATCACACCAAAACT-GATGT 2099
||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||
Sbjct 2067 ATTGAGGCAGACCATAAATAAAGTGAAGCAAGAAAGGAGCATCACACCAAAACTAG-TGT 2125
Query 2100 TTATCCGAGGAGGACGAGACGATGCTACTGTCTTTGAGAACTATCTTATAGAAGAACAAG 2159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2126 TTATCCGAGGAGGACGAGACGATGCTACTGTCTTTGAGAACTATCTTATAGAAGAACAAG 2185
Query 2160 ATGTGGACGGTATTGGTTTTGCTAGCGCCATGGGTTTCGTGTCTTTCCTCGATGATATTT 2219
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2186 ATGTGGACGGTAATGGTTTTGCTAGCGCCATGGGTTTCGTGTCTTTCCTCGATGATATTT 2245
Query 2220 CGCAGCGTGTCACTGAATACATGAAGTGAAAGCCAAATGACCCTTTAGtttttttATACA 2279
|||||||||||||||||||||||||||||||||||||||||||| |||||| || |||||
Sbjct 2246 CGCAGCGTGTCACTGAATACATGAAGTGAAAGCCAAATGACCCTCTAGTTTATT-ATACA 2304
Query 2280 TCCAAACTTAAAAATTTCAACTGTGTCAGAGTTTTACTCTTCTTGTTGTAACGTTTGCTT 2339
|||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2305 TCCAAACTCAAAATTTTCAACTGTGTCAGAGTTTTACTCTTCTTGTTGTAACATTTGCTT 2364
Query 2340 -AGACTAGCATCCCAACTTTTTTGATCTATAAATCAGAATGAATAAT-AAG 2388
||||||||||||||||||||||| ||| | ||||| |||||||||| |||
Sbjct 2365 TAGACTAGCATCCCAACTTTTTTGCTCTCTTAATCAAAATGAATAATTAAG 2415
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 118573687290
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5