BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481647
Length=993
Score E
Sequences producing significant alignments: (Bits) Value
AT2G27470.1 | Symbols: NF-YB11 | nuclear factor Y, subunit B11 ... 857 0.0
> AT2G27470.1 | Symbols: NF-YB11 | nuclear factor Y, subunit B11
| chr2:11744981-11746411 REVERSE LENGTH=1079
Length=1079
Score = 857 bits (464), Expect = 0.0
Identities = 636/715 (89%), Gaps = 27/715 (4%)
Strand=Plus/Plus
Query 1 gagagagagaagagaagaATGGAGTCGGAGAAAGTGGTGGTGGACGAGCTGCCGCTGGCT 60
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 19 GAGAGAGAGGAGAGAAGAATGGAGTCGGAGAAAGTGGTGGTGGACGAGCTGCCGCTAGCT 78
Query 61 ATCGTGCGCCGGGTGGTGAAGGATAAGCTGTCGGAGTGTTCGCCGGATTATGACGTCAGT 120
|| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 79 ATTGTGCGCCGGGTGGTGAAGAAGAAGCTGTCGGAGTGTTCGCCGGATTATGACGTCAGT 138
Query 121 ATTCACAAGGAAGCGTTGCTTGCATTCTCAGAGAGTGCGAGGATCTTCATCCACTACCTC 180
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 139 ATTCACAAGGAAGCTTTGCTCGCATTCTCAGAGAGTGCGAGGATCTTCATCCACTACCTC 198
Query 181 TCCTCCACGGCAAATGATTTTTGTAAAGATGCAAGAAGACAAACTATGAAGGCTGATGAT 240
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 199 TCCGCCACGGCAAATGATTTTTGTAAAGATGCAAGAAGACAAACTATGAAGGCTGATGAT 258
Query 241 GTGTTTAAGGCATTAGAAGAAATGGATTTTTCAGAATTTTTGGAGCCGCTTAAAGCTTCT 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 259 GTGTTTAAGGCATTAGAAGAAATGGATTTTTCAGAATTTTTGGAGCCGCTTAAATCTTCT 318
Query 301 CTTGAAGATTTTAAGAAGAAGA-TCGCGGGGAAAAAAGCGGGTGGTGGAGCAGCTTCAAA 359
|||||||||||||||||||||| | ||||||||||| ||||||| || ||| ||||| |
Sbjct 319 CTTGAAGATTTTAAGAAGAAGAAT-GCGGGGAAAAAGGCGGGTGCTGCAGCTGCTTCGTA 377
Query 360 GCCTGCTGGTGGAGCTGCTTCAAAATCTGCTGGTTCAACAGCTTCGAAGCCCAAAGAGAC 419
||||||||||||||||||| |||||| | || ||| ||||||||||||||||||||
Sbjct 378 TCCTGCTGGTGGAGCTGCTTTGAAATCTTCAAGTGGAACTGCTTCGAAGCCCAAAGAGAC 437
Query 420 GAAGAAGAGGAAACAGGAAGGGCCATCAACGCAAAAGGGTGCAAGGAAATGCAAAATAGA 479
|||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||
Sbjct 438 GAAGAAGAGGAAACAGGAAGAACCATCTACGCAAAAGGGTGCAAGGAAAAGCAAAATAGA 497
Query 480 TGAGGAAACTAACAAGAATGATGAGGAGAATGAGAATGACAACACAGAAGAAGAGAATGG 539
|||||||||||| | |||||| ||||||| ||||||||||||||| ||||||||||||||
Sbjct 498 TGAGGAAACTAAGAGGAATGACGAGGAGACTGAGAATGACAACACGGAAGAAGAGAATGG 557
Query 540 AAACGATGAGGAGGATGAGAATG-A--CGATGAA-AATACG-GAA-GA-GAATGGGAAT- 591
||||||||||||||||||||||| | |||||| || | | ||| || || || |||
Sbjct 558 AAACGATGAGGAGGATGAGAATGGAAACGATGAGGAAGATGAGAATGACGA-TGAAAATA 616
Query 592 --GATgagga-g--aacga-gaaggagaatgagg--gaaacagcatggaagagaatggga 643
|| ||| | | || || || |||||| || | |||| | | ||||||||||||||
Sbjct 617 CAGAAGAGAATGGGAATGATGA-GGAGAACGACGATGAAA-AT-ACGGAAGAGAATGGGA 673
Query 644 atga-gagcgagga-gagTGGGA--ATGAGGACCATAGCATGGAAGAAAATGGGA 694
|||| ||| ||| | ||| ||| ||||||| | ||||||||||| |||||||
Sbjct 674 ATGATGAG-GAGAACGAGAAGGAGGATGAGGAAAACAGCATGGAAGAGAATGGGA 727
Score = 640 bits (346), Expect = 0.0
Identities = 456/505 (90%), Gaps = 23/505 (5%)
Strand=Plus/Plus
Query 499 GATGAGG-AGAATGAGAATGAC-A--ACACAGA-AGAAGAGAATGGAAACGATGAGGAGG 553
||||||| || ||||||||||| | | | | | |||||||||||| | |||| || |
Sbjct 586 GATGAGGAAG-ATGAGAATGACGATGA-AAATACAGAAGAGAATGG-GA--ATGATGA-G 639
Query 554 ATGAGAATGACGATGAAAATACGGAAGAGAATGGGAATGATgaggagaacgagaaggaga 613
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 640 --GAGAACGACGATGAAAATACGGAAGAGAATGGGAATGATGAGGAGAACGAGAAGGAGG 697
Query 614 atgagggaaacagcatggaagagaatgggaatgagagcgaggagagTGGGAATGAGGACC 673
|||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 698 ATGAGGAAAACAGCATGGAAGAGAATGGGAATGAGAGCGAAGAGAGCGGGAATGAGGACC 757
Query 674 ATAGCATGGAAGAAAATGGGAGTGGGGATGGTGAAGATAATGAGAACGAGGACGGGAGTG 733
|||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
Sbjct 758 ATAGCATGGAAGAAAATGGGAGCGGGGTTGGTGAAGATAATGAGAACGAGGACGGGAGCG 817
Query 734 GAAGCGGAAGTGGTGAAGAGGTAGAGGGTGATGAAGAAGATGAATGAACTCAAGGTTATA 793
||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 818 TAAGTGGAAGTGGTGAAGAGGTAGAGAGTGATGAAGAAGATGAATGAACTCAAGGTTATA 877
Query 794 TTTTTTGCTAAGAACATGTTTTCAGGTTAACGTTGGA--TTAGCTTGTAAGCTTGAAGCA 851
||||| |||||||||||||||||||||| | |||||| |||||||||||||||||||||
Sbjct 878 TTTTT-GCTAAGAACATGTTTTCAGGTTTATGTTGGAGATTAGCTTGTAAGCTTGAAGCA 936
Query 852 GTGGTTGTGGCCACGAGCATGTCATAGACTCATATCAAAT-TGTTTTGCTCTTTGGCTCT 910
||||||||||||| |||||||| ||||||| | | || || | |||||||||||||||||
Sbjct 937 GTGGTTGTGGCCATGAGCATGTAATAGACT-A-A-CATATCT-TTTTGCTCTTTGGCTCT 992
Query 911 AGTGTTAACAGATATGTAAGTCAAAGTTTAGAAA-TGAAATTTTGCAACAAAATTTTGGC 969
||||||| || ||||||||||||||||||||||| |||| ||||||||||||||||| ||
Sbjct 993 AGTGTTACCAAATATGTAAGTCAAAGTTTAGAAAATGAAGTTTTGCAACAAAATTTTAGC 1052
Query 970 TTA-TTATTCATTCTGATTTAGAGA 993
||| ||||||||| ||||| |||||
Sbjct 1053 TTAATTATTCATTTTGATTAAGAGA 1077
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48626654296
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5