BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg481647 Length=993 Score E Sequences producing significant alignments: (Bits) Value AT2G27470.1 | Symbols: NF-YB11 | nuclear factor Y, subunit B11 ... 857 0.0 > AT2G27470.1 | Symbols: NF-YB11 | nuclear factor Y, subunit B11 | chr2:11744981-11746411 REVERSE LENGTH=1079 Length=1079 Score = 857 bits (464), Expect = 0.0 Identities = 636/715 (89%), Gaps = 27/715 (4%) Strand=Plus/Plus Query 1 gagagagagaagagaagaATGGAGTCGGAGAAAGTGGTGGTGGACGAGCTGCCGCTGGCT 60 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 19 GAGAGAGAGGAGAGAAGAATGGAGTCGGAGAAAGTGGTGGTGGACGAGCTGCCGCTAGCT 78 Query 61 ATCGTGCGCCGGGTGGTGAAGGATAAGCTGTCGGAGTGTTCGCCGGATTATGACGTCAGT 120 || |||||||||||||||||| | |||||||||||||||||||||||||||||||||||| Sbjct 79 ATTGTGCGCCGGGTGGTGAAGAAGAAGCTGTCGGAGTGTTCGCCGGATTATGACGTCAGT 138 Query 121 ATTCACAAGGAAGCGTTGCTTGCATTCTCAGAGAGTGCGAGGATCTTCATCCACTACCTC 180 |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 139 ATTCACAAGGAAGCTTTGCTCGCATTCTCAGAGAGTGCGAGGATCTTCATCCACTACCTC 198 Query 181 TCCTCCACGGCAAATGATTTTTGTAAAGATGCAAGAAGACAAACTATGAAGGCTGATGAT 240 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 199 TCCGCCACGGCAAATGATTTTTGTAAAGATGCAAGAAGACAAACTATGAAGGCTGATGAT 258 Query 241 GTGTTTAAGGCATTAGAAGAAATGGATTTTTCAGAATTTTTGGAGCCGCTTAAAGCTTCT 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 259 GTGTTTAAGGCATTAGAAGAAATGGATTTTTCAGAATTTTTGGAGCCGCTTAAATCTTCT 318 Query 301 CTTGAAGATTTTAAGAAGAAGA-TCGCGGGGAAAAAAGCGGGTGGTGGAGCAGCTTCAAA 359 |||||||||||||||||||||| | ||||||||||| ||||||| || ||| ||||| | Sbjct 319 CTTGAAGATTTTAAGAAGAAGAAT-GCGGGGAAAAAGGCGGGTGCTGCAGCTGCTTCGTA 377 Query 360 GCCTGCTGGTGGAGCTGCTTCAAAATCTGCTGGTTCAACAGCTTCGAAGCCCAAAGAGAC 419 ||||||||||||||||||| |||||| | || ||| |||||||||||||||||||| Sbjct 378 TCCTGCTGGTGGAGCTGCTTTGAAATCTTCAAGTGGAACTGCTTCGAAGCCCAAAGAGAC 437 Query 420 GAAGAAGAGGAAACAGGAAGGGCCATCAACGCAAAAGGGTGCAAGGAAATGCAAAATAGA 479 |||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||| Sbjct 438 GAAGAAGAGGAAACAGGAAGAACCATCTACGCAAAAGGGTGCAAGGAAAAGCAAAATAGA 497 Query 480 TGAGGAAACTAACAAGAATGATGAGGAGAATGAGAATGACAACACAGAAGAAGAGAATGG 539 |||||||||||| | |||||| ||||||| ||||||||||||||| |||||||||||||| Sbjct 498 TGAGGAAACTAAGAGGAATGACGAGGAGACTGAGAATGACAACACGGAAGAAGAGAATGG 557 Query 540 AAACGATGAGGAGGATGAGAATG-A--CGATGAA-AATACG-GAA-GA-GAATGGGAAT- 591 ||||||||||||||||||||||| | |||||| || | | ||| || || || ||| Sbjct 558 AAACGATGAGGAGGATGAGAATGGAAACGATGAGGAAGATGAGAATGACGA-TGAAAATA 616 Query 592 --GATgagga-g--aacga-gaaggagaatgagg--gaaacagcatggaagagaatggga 643 || ||| | | || || || |||||| || | |||| | | |||||||||||||| Sbjct 617 CAGAAGAGAATGGGAATGATGA-GGAGAACGACGATGAAA-AT-ACGGAAGAGAATGGGA 673 Query 644 atga-gagcgagga-gagTGGGA--ATGAGGACCATAGCATGGAAGAAAATGGGA 694 |||| ||| ||| | ||| ||| ||||||| | ||||||||||| ||||||| Sbjct 674 ATGATGAG-GAGAACGAGAAGGAGGATGAGGAAAACAGCATGGAAGAGAATGGGA 727 Score = 640 bits (346), Expect = 0.0 Identities = 456/505 (90%), Gaps = 23/505 (5%) Strand=Plus/Plus Query 499 GATGAGG-AGAATGAGAATGAC-A--ACACAGA-AGAAGAGAATGGAAACGATGAGGAGG 553 ||||||| || ||||||||||| | | | | | |||||||||||| | |||| || | Sbjct 586 GATGAGGAAG-ATGAGAATGACGATGA-AAATACAGAAGAGAATGG-GA--ATGATGA-G 639 Query 554 ATGAGAATGACGATGAAAATACGGAAGAGAATGGGAATGATgaggagaacgagaaggaga 613 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 640 --GAGAACGACGATGAAAATACGGAAGAGAATGGGAATGATGAGGAGAACGAGAAGGAGG 697 Query 614 atgagggaaacagcatggaagagaatgggaatgagagcgaggagagTGGGAATGAGGACC 673 |||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||| Sbjct 698 ATGAGGAAAACAGCATGGAAGAGAATGGGAATGAGAGCGAAGAGAGCGGGAATGAGGACC 757 Query 674 ATAGCATGGAAGAAAATGGGAGTGGGGATGGTGAAGATAATGAGAACGAGGACGGGAGTG 733 |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| | Sbjct 758 ATAGCATGGAAGAAAATGGGAGCGGGGTTGGTGAAGATAATGAGAACGAGGACGGGAGCG 817 Query 734 GAAGCGGAAGTGGTGAAGAGGTAGAGGGTGATGAAGAAGATGAATGAACTCAAGGTTATA 793 ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 818 TAAGTGGAAGTGGTGAAGAGGTAGAGAGTGATGAAGAAGATGAATGAACTCAAGGTTATA 877 Query 794 TTTTTTGCTAAGAACATGTTTTCAGGTTAACGTTGGA--TTAGCTTGTAAGCTTGAAGCA 851 ||||| |||||||||||||||||||||| | |||||| ||||||||||||||||||||| Sbjct 878 TTTTT-GCTAAGAACATGTTTTCAGGTTTATGTTGGAGATTAGCTTGTAAGCTTGAAGCA 936 Query 852 GTGGTTGTGGCCACGAGCATGTCATAGACTCATATCAAAT-TGTTTTGCTCTTTGGCTCT 910 ||||||||||||| |||||||| ||||||| | | || || | ||||||||||||||||| Sbjct 937 GTGGTTGTGGCCATGAGCATGTAATAGACT-A-A-CATATCT-TTTTGCTCTTTGGCTCT 992 Query 911 AGTGTTAACAGATATGTAAGTCAAAGTTTAGAAA-TGAAATTTTGCAACAAAATTTTGGC 969 ||||||| || ||||||||||||||||||||||| |||| ||||||||||||||||| || Sbjct 993 AGTGTTACCAAATATGTAAGTCAAAGTTTAGAAAATGAAGTTTTGCAACAAAATTTTAGC 1052 Query 970 TTA-TTATTCATTCTGATTTAGAGA 993 ||| ||||||||| ||||| ||||| Sbjct 1053 TTAATTATTCATTTTGATTAAGAGA 1077 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48626654296 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5