BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481650
Length=769
Score E
Sequences producing significant alignments: (Bits) Value
AT2G27490.1 | Symbols: ATCOAE | dephospho-CoA kinase family | c... 1227 0.0
> AT2G27490.1 | Symbols: ATCOAE | dephospho-CoA kinase family |
chr2:11748015-11750182 REVERSE LENGTH=1061
Length=1061
Score = 1227 bits (664), Expect = 0.0
Identities = 738/773 (95%), Gaps = 8/773 (1%)
Strand=Plus/Plus
Query 1 AAAATTTTAAGTGTTCCTGAGGAGTAAAAGA--GGAAAAAGGAGAATGAGAATAGTCGGG 58
|||| | |||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 248 AAAA-TATAAGTGTTCCTGAGGAGTAAAAGAGGGGAAAAA-GAGAATGAGAATAGTCGGG 305
Query 59 TTAACGGGAGGCATAGCGTCTGGGAAGAGTACTGTCTCCAACCTCTTCAAGGCTAGTGGC 118
|||||||||||||||||||||||||||||||| || || |||||||||||||||||||||
Sbjct 306 TTAACGGGAGGCATAGCGTCTGGGAAGAGTACAGTGTCTAACCTCTTCAAGGCTAGTGGC 365
Query 119 ATTCCCGTTGTTGACGCTGATGTTGTTGCTCGAGATGTATTGAAGAAAGGAAGCGGTGGT 178
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 366 ATTCCCGTTGTTGACGCTGATGTTGTTGCTCGAGATGTATTGAAGAAAGGAAGCGGTGGA 425
Query 179 TGGAAAAGAGTAGTTGCAGCTTTTGGGGAGGAGATTCTGCTTCCTAGTAGAGAAGTGGAT 238
||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 426 TGGAAAAGAGTCGTTGCAGCTTTTGGTGAGGAGATTCTGCTTCCTAGTGGAGAAGTGGAT 485
Query 239 CGGCCGAAACTCGGTCAGATTGTGTTTTCGTCTGATTCTAAGCGCCAACTTCTAAACAAA 298
||||| |||||||||||||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct 486 CGGCCAAAACTCGGTCAGATTGTGTTCTCGTCTGATTCCAAGCGTCAACTTCTAAACAAG 545
Query 299 CTGATGGCTCCATACATATCAAGTGGTATCTTTTGGGAAATTCTGAAACAATGGGCGAGT 358
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 546 CTGATGGCTCCATACATATCAAGTGGTATCTTCTGGGAAATTCTGAAACAATGGGCGAGT 605
Query 359 GGAGCTAAAGTGATCGTTGTCGATATCCCTTTGTTGTTCGAAGTGAAGATGGATAAATGG 418
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 606 GGAGCTAAAGTGATAGTTGTCGATATCCCTTTGTTGTTCGAAGTGAAGATGGATAAATGG 665
Query 419 ACTAAACCTATTGTGGTTGTGTGGGTTAGTCAAGAAACACAGCTTAAGAGACT-AGTGGA 477
||||||||||||||||||||||||||||||||||| ||||| ||||||||||| | ||||
Sbjct 666 ACTAAACCTATTGTGGTTGTGTGGGTTAGTCAAGAGACACAACTTAAGAGACTGA-TGGA 724
Query 478 GAGAGATGGACTGAGTGAGGAAGATGCAAGAAATAGAGTGATGGCTCAGATGCCGTTGGA 537
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 725 GAGAGATGGATTGAGTGAGGAAGATGCAAGAAACAGAGTGATGGCTCAGATGCCGTTGGA 784
Query 538 TTCGAAAAGAAGCAAAGCTGATGTTGTGATCGATAATAATGGCTCTCTCGACGACCTTCA 597
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 785 TTCGAAAAGAAGCAAAGCTGATGTTGTGATCGATAATAATGGCTCTCTTGACGACCTTCA 844
Query 598 CCAACAGTTCGACAAGGTTTTG-TCTGAAATTAGAAAACCCTTGACGTGGATCGAGTTTT 656
|||||||||||| ||||||||| | ||||||||||| ||| |||||||||||||||||||
Sbjct 845 CCAACAGTTCGAGAAGGTTTTGAT-TGAAATTAGAAGACCATTGACGTGGATCGAGTTTT 903
Query 657 GGCGTTCAAGGCAAGGAGCCTTCTCGGTCATTGGTTCGGTGATTTTAGGATTATCTGTTT 716
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 904 GGCGTTCAAGGCAAGGAGCCTTCTCGGTCCTTGGTTCAGTGATTTTAGGATTATCTGTTT 963
Query 717 GCAAACAGCTCAAAATTGGCTCTTAACATTTCACTTCTGTTACTGTTAATAAA 769
||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 964 GCAAACAGCTCAAAATTGGCTCTTAACATTTCACTTCTGTTACTGCTAAAAAA 1016
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37374205368
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5