BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481654
Length=993
Score E
Sequences producing significant alignments: (Bits) Value
AT2G27505.1 | Symbols: | FBD-like domain family protein | chr2... 846 0.0
AT5G44950.1 | Symbols: | F-box/RNI-like/FBD-like domains-conta... 185 6e-46
AT5G44960.1 | Symbols: | F-box/RNI-like/FBD-like domains-conta... 172 4e-42
AT1G31983.1 | Symbols: | pseudogene, hypothetical protein | ch... 163 3e-39
AT5G44980.1 | Symbols: | F-box/RNI-like/FBD-like domains-conta... 147 3e-34
> AT2G27505.1 | Symbols: | FBD-like domain family protein | chr2:11756566-11757829
FORWARD LENGTH=1077
Length=1077
Score = 846 bits (458), Expect = 0.0
Identities = 634/713 (89%), Gaps = 36/713 (5%)
Strand=Plus/Plus
Query 296 TAAAGAATGACGATTCCATCGACGATTGTAACAAAAGAGTCATGGAGTGGATAACCGAAG 355
||||| ||||||| ||||| ||||| ||||||||||||||||||||||||||| ||||||
Sbjct 386 TAAAGCATGACGACTCCATGGACGACTGTAACAAAAGAGTCATGGAGTGGATAGCCGAAG 445
Query 356 TAGTCCACCGCGGAGTTCAACATCTAGATGTTGA-GGC----CGT-CGGGATAATTCAAT 409
|||||||| ||||||||||||||||||||||||| | | ||| ||||||||||||||
Sbjct 446 TAGTCCACGGCGGAGTTCAACATCTAGATGTTGATGCCAAAACGTGCGGGATAATTCAAT 505
Query 410 CTCATCCAG-GAT-T-TAACAACATAATGTATTCACCTTCTGTAGATTTCATGCCTAAGT 466
||||||||| || | ||| | || ||||| ||||||||||||||||| |||||||||||
Sbjct 506 CTCATCCAGATATATATAAGAGCACAATGTGTTCACCTTCTGTAGATTCCATGCCTAAGT 565
Query 467 ATGTTTATGTGAGCAAGACATTGGTGTCTTTAAAGCTCGTAAACGTAGGGCTTGAAGATC 526
|||||||||||||||||||| |||||||||||||||||||||| ||||||| ||| ||||
Sbjct 566 ATGTTTATGTGAGCAAGACAGTGGTGTCTTTAAAGCTCGTAAAGGTAGGGCATGAGGATC 625
Query 527 CCAAGTTTGTTGTTTCTCTACCTAGTCTCAAGATCATGCATCTAGAAAACATT-TATTAC 585
|||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||
Sbjct 626 CCAAGTTTGTTGTTTCTCTACCTAGTCTCAAGATGATGCATCTAGAAAACATTCT-TTAC 684
Query 586 AAGAGTCATGGTGGTCTTTTGATCATAAAGATGCTCATCTCAGCCTCTCCTGTTCTTGAA 645
|||| |||||||| ||||||||| |||||||||||| |||||| ||||||||||||||||
Sbjct 685 AAGAATCATGGTGTTCTTTTGATTATAAAGATGCTCCTCTCAGGCTCTCCTGTTCTTGAA 744
Query 646 GATCTTACCTTGGAGTTTTCGTTTTCTGTTCCAAGTCC-AACAATGCCAAAGAGTAATTT 704
| |||||||||||||||||| | |||||| || | ||||||||||| |||||||||
Sbjct 745 GTTCTTACCTTGGAGTTTTC-T-----GTTCCA-GTTCTAACAATGCCAAGGAGTAATTT 797
Query 705 CGATTTAGTGCAAGGCAATTATT-TTACATGGAAGCCAGAGGAAATGGACCTTACTAATG 763
||||||||||||| | ||| || || |||| ||||||| |||||| |||||||||||||
Sbjct 798 GGATTTAGTGCAAGACTATTTTTATT-CATGTAAGCCAGGGGAAATAGACCTTACTAATG 856
Query 764 TGCCTCGGTGTATGAAATCGACGCTGGTGTATGTTAAGATCAACAAACTGATAACGAAGG 823
|||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 857 TGCCTCTGTGTATGCAATCGACGCTGAAGTATGTTAAGATCAACAAACTGATAACGAAGG 916
Query 824 AGGAAACTGGGATTAAACTAGTGAATTACTTTCTTGAGAATTCAGCAGTCCTCAAGAAAC 883
|||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 917 AGGAAAGTGGGATTAAAGTAGTGAATTACTTTCTTGATAATTCAGCAGTCCTCAAGAAAC 976
Query 884 TGACTATGTTTTTCACACATTCTTCTATGGAG-A--TTCAAGAGCCAGAGAGCTACATGA 940
|||| | || ||||||||||||| | |||||||||||||||||| |||||
Sbjct 977 TGAC-A-------CA----TTCTTCTATGGAGGAGATTCAAGAGCCAGAGAGCTTCATGA 1024
Query 941 AGCTTCTTACATCCACGAAGCTTTCTCGCAACTGTCAAGTTTTCATTCATTGA 993
|||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1025 AGCTTCTTACATCCACCAAGCTTTCTCGCAACTGCCAAGTTTTCATTCATTGA 1077
Score = 198 bits (107), Expect = 7e-50
Identities = 209/254 (82%), Gaps = 23/254 (9%)
Strand=Plus/Plus
Query 16 CTTCCAATAGGCGATTCGGTTAAGACGAGCGTTTTGTCGAAGAGATGGGAATTTCTCTGG 75
||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 211 CTTCCGACAGGCGATTCCGTTAAGACGAGCGTTTTGTCGAAGAGATGGGAATTTCTCTGG 270
Query 76 CTAGA-GGTTTCAAGATTGGACTTAGACGCCATTAACTTCTCTCGTGACGG---AGAAGC 131
||| | ||||||||| ||||||||||||| ||| ||||| ||||||||||| ||||||
Sbjct 271 CTA-ATGGTTTCAAGTTTGGACTTAGACGTCATCAACTTGTCTCGTGACGGCGGAGAAGC 329
Query 132 CTTGGCGAGA--CAT-C---T-TT-C--GATTTTTTC-GAAGAAGAT--T--T---TAAA 173
||||||||| ||| | | || | || || | | || || | | ||||
Sbjct 330 CTTGGCGAGGTTCATGCACATGTTTCTAGAGTTGAACCGTGGATCATCATCATGCCTAAA 389
Query 174 GAATGACGATTCCATCGACGATTGTAACAAAAGAGTCATGGAGTGGATAACCGAAGTAGT 233
| ||||||| ||||| ||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 390 GCATGACGACTCCATGGACGACTGTAACAAAAGAGTCATGGAGTGGATAGCCGAAGTAGT 449
Query 234 CCACCGCGGAGTTC 247
|||| |||||||||
Sbjct 450 CCACGGCGGAGTTC 463
> AT5G44950.1 | Symbols: | F-box/RNI-like/FBD-like domains-containing
protein | chr5:18151665-18153164 FORWARD LENGTH=1317
Length=1317
Score = 185 bits (100), Expect = 6e-46
Identities = 182/221 (82%), Gaps = 8/221 (4%)
Strand=Plus/Plus
Query 737 AGCCAGAGGAAATGGACCTTACTAATGTGCCTCGGTGTATGAA-ATCGACGCTGGTGTAT 795
|||||||| |||| ||| |||| ||| ||||||||||| | || |||||||||| |||
Sbjct 1061 AGCCAGAGCAAATCGACTTTACCAATCTGCCTCGGTGT-TTAATTTCGACGCTGGAGTAC 1119
Query 796 GTTAAGA-TCAACAAACTGA-TAACGAAGGAGGAAACTGGGATTAAACTAGTGAATTACT 853
||| ||| | ||| |||| | | | || |||||||| |||||||||| | ||||| ||||
Sbjct 1120 GTTGAGATTAAAC-AACTTACT-ATGAGGGAGGAAAGTGGGATTAAATTGGTGAAATACT 1177
Query 854 TTCTTGAGAATTCAGCAGTCCTCAAGAAACTGACTATGTTTTTCACACATTCTTCTATGG 913
||||||||||||||||||||||||||||||||||| || ||||| | ||||| | |||
Sbjct 1178 TTCTTGAGAATTCAGCAGTCCTCAAGAAACTGACTCTGAGTTTCATAGATTCTCCCATG- 1236
Query 914 AG-ATTCAAGAGCCAGAGAGCTACATGAAGCTTCTTACATC 953
| | |||||| |||||| ||||||| |||||||||||||
Sbjct 1237 ACCAACCAAGAGTCAGAGATCTACATGCAGCTTCTTACATC 1277
> AT5G44960.1 | Symbols: | F-box/RNI-like/FBD-like domains-containing
protein | chr5:18153852-18155391 FORWARD LENGTH=1251
Length=1251
Score = 172 bits (93), Expect = 4e-42
Identities = 182/223 (82%), Gaps = 14/223 (6%)
Strand=Plus/Plus
Query 763 GTGCCTCGGTGTATGAAATCGACGCTGGTGTATGTTAAGATCAACAAACTGATAACGAAG 822
||||||| |||| ||| |||||| || | ||||||| | || ||||||||||| | || |
Sbjct 1027 GTGCCTCAGTGTTTGATATCGACTCTCGAGTATGTTCACATTAACAAACTGATGATGATG 1086
Query 823 GAGGAAACTGGGATTAAACTAGTGAATTACTTTCTTGAGAATTCAGCAGTCCTCAAGAAA 882
||| ||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 1087 GAGCAAAGTGGGATTAAACTAGTAAATTACTTTATTGAGAATTCAGCAGTCCTCAAGAAA 1146
Query 883 CTGACTAT--GTTTTTCACACATT-CTTCTATGGAGATTCAAGAGCCAGAGAGCTACATG 939
|| ||| | |||| ||| || ||||||| ||| |||| |||||||||| |
Sbjct 1147 CTTACTCTACGTTTCTCATTTTTTTCTTCTAT--AGA-----GAGC--GAGAGCTACAAG 1197
Query 940 AAGCTTCTTACATCCACGAAGCTTTCTCGCA-ACTGTCAAGTT 981
|||||||||||||| || |||||||||| || | |||||||||
Sbjct 1198 AAGCTTCTTACATCAACAAAGCTTTCTCCCACA-TGTCAAGTT 1239
> AT1G31983.1 | Symbols: | pseudogene, hypothetical protein |
chr1:11501674-11503237 REVERSE LENGTH=1564
Length=1564
Score = 163 bits (88), Expect = 3e-39
Identities = 200/252 (79%), Gaps = 16/252 (6%)
Strand=Plus/Plus
Query 738 GCCAGAGG-AAATGGACCTTACTAATGTGCCTCGGTGTATGAA-ATCGACGCTGGTGTAT 795
|||| ||| |||| ||||||| | ||||||||| ||| | || |||||| |||| |||
Sbjct 1309 GCCA-AGGCAAATCGACCTTAGGAGTGTGCCTCGATGT-TTAACATCGACTCTGGAATAT 1366
Query 796 GTTAAGATCAACAAACTGATAACGAAG-GAGGAAACTGGGATTAAACTAGTGAATTACTT 854
|||||||| ||||||||||| | ||| ||||||||||||||||| ||||||||||||||
Sbjct 1367 GTTAAGATTAACAAACTGATTA-TAAGAGAGGAAACTGGGATTAATCTAGTGAATTACTT 1425
Query 855 TCTTGAGAATTCAGCAGTCCTCAAGAAACTGACTATGTTTTTCACACATTCTTCTATGGA 914
|||||||||||||||||| || || ||||| ||| | ||||| | ||| | ||||
Sbjct 1426 TCTTGAGAATTCAGCAGTACTAAAAAAACTCACTCTAAGTTTCATAGATTGTCCTATACC 1485
Query 915 -GATTCAAGAGC--CAGAGAGC-TACATGAAGCTTCTTACATCCACGAAGCTTTCTCGCA 970
|| ||| ||| | || | | |||| |||||||||||||||| |||||||||| ||
Sbjct 1486 CGA--CAA-AGCTTCCGATATAAT-CATGGAGCTTCTTACATCCACAAAGCTTTCTCACA 1541
Query 971 -ACTGTCAAGTT 981
| || ||||||
Sbjct 1542 TA-TGCCAAGTT 1552
> AT5G44980.1 | Symbols: | F-box/RNI-like/FBD-like domains-containing
protein | chr5:18160290-18162264 FORWARD LENGTH=1592
Length=1592
Score = 147 bits (79), Expect = 3e-34
Identities = 192/244 (79%), Gaps = 18/244 (7%)
Strand=Plus/Plus
Query 741 AGAGGAAATGGACCTTACTAATGTGCCTCGGTGTATGAA-ATCGACGCTGGTGTATGTTA 799
|||| || ||||| |||| || ||||||| ||| | || ||||||||||| |||||||
Sbjct 1143 AGAGCAAGTGGACTTTACCAACGTGCCTCAATGT-TTAATATCGACGCTGGAGTATGTTG 1201
Query 800 AGATCAACAAACTGATAACGAAGGAGGAAACTGGGATTAAACTAGTGAATTACTTTCTTG 859
|||| ||| || | |||| ||| ||| | ||||||||||||||| ||||||||||
Sbjct 1202 AGAT---TAAA--GA-ACCGAATGAGAAAAGTACGATTAAACTAGTGAACTACTTTCTTG 1255
Query 860 AGAATTCAGCAGTCCTCAAGAAACTGACTATGTTTTTCACACATTCTTCTATGGAGATTC 919
||||||||||||||||||||||||| ||| | |||| || |||| ||| | | | |
Sbjct 1256 AGAATTCAGCAGTCCTCAAGAAACTTACTCTACGTTTCTCATATTCATCT-TCTA--T-C 1311
Query 920 AAGAGCC-AGAGAGCTACATGAAGCTTCTTACATCCACGAAGCTTTCTCGCA-ACTGTCA 977
| || | ||||||||| ||||||||||||||| || |||||||||| || | |||||
Sbjct 1312 TA---CCTAAAGAGCTACAAGAAGCTTCTTACATCAACAAAGCTTTCTCCCACA-TGTCA 1367
Query 978 AGTT 981
||||
Sbjct 1368 AGTT 1371
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48626654296
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5