BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481656
Length=2779
Score E
Sequences producing significant alignments: (Bits) Value
AT2G28470.1 | Symbols: BGAL8 | beta-galactosidase 8 | chr2:1216... 3903 0.0
AT1G31740.1 | Symbols: BGAL15 | beta-galactosidase 15 | chr1:11... 211 3e-53
> AT2G28470.1 | Symbols: BGAL8 | beta-galactosidase 8 | chr2:12168840-12173570
REVERSE LENGTH=3068
Length=3068
Score = 3903 bits (2113), Expect = 0.0
Identities = 2403/2547 (94%), Gaps = 4/2547 (0%)
Strand=Plus/Plus
Query 210 AAAATGGTTAAAGGAAGGAAGATGGAGATGATATTGTTACTTATACTTCAGATAATGATG 269
||||||||||||| |||||||||||||||||| || ||||| || ||| ||| || ||
Sbjct 318 AAAATGGTTAAAGTAAGGAAGATGGAGATGATTTTATTACTAATTCTTGTGATTGTGGTG 377
Query 270 GCGGCGACGGCGGTGAATGTGACGTACGACCACCGTGCTTTAGTAATCGACGGGAAACGG 329
||||||||||||| ||||||||| || ||||||||||| |||||||||||||||||||||
Sbjct 378 GCGGCGACGGCGGCGAATGTGACTTATGACCACCGTGCATTAGTAATCGACGGGAAACGG 437
Query 330 AAAGTTCTGATTTCAGGCTCTATTCATTATCCTCGGAGTACTCCTGAGATGTGGCCAGAC 389
|||||||| || || || |||||||||||||||||||||||||||||||||||||||||
Sbjct 438 AAAGTTCTAATCTCTGGTTCTATTCATTATCCTCGGAGTACTCCTGAGATGTGGCCAGAG 497
Query 390 CTTATAAAGAAATCTAAAGACGGTGGTTTAGATGTTATAGAGACGTATGTGTTTTGGAGT 449
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 498 CTTATACAGAAATCTAAAGACGGTGGTTTAGATGTTATAGAGACGTATGTGTTTTGGAGT 557
Query 450 GGTCACGAACCGGAGAAGAATAAGTATAATTTTGAAGGAAGATATGATTTAGTGAAATTT 509
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 558 GGTCACGAACCGGAGAAAAATAAGTATAATTTTGAAGGAAGATATGATTTAGTGAAATTT 617
Query 510 GTGAAGCTTGTGGAGGAGGCTGGTCTTTATGTTCATCTAAGAATTGGTCCTTATGTTTGT 569
|||||||||| || | |||||||| ||||||||| |||||||||||||||| || |||
Sbjct 618 GTGAAGCTTGCGGCTAAAGCTGGTCTCTATGTTCATTTAAGAATTGGTCCTTACGTCTGT 677
Query 570 GCTGAATGGAATTACGGTGGTTTCCCAGTGTGGTTGCATTTTGTTCCTGGAATTAAGTTT 629
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 678 GCTGAATGGAATTACGGTGGTTTCCCAGTGTGGTTGCATTTTGTTCCAGGAATTAAGTTT 737
Query 630 CGAACTGATAATGAACCGTTTAAGGAGGAAATGCAGAGATTTACCACAAAGATTGTTGAT 689
|||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||
Sbjct 738 CGAACTGATAATGAGCCATTTAAGGAAGAAATGCAGAGATTTACCACAAAGATTGTTGAT 797
Query 690 TTGATGAAGCAAGAAAAGCTTTATGCATCACAAGGAGGGCCAATTATTCTCTCACAGATT 749
|||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||
Sbjct 798 TTGATGAAGCAAGAAAAGCTTTATGCATCACAAGGAGGTCCAATCATTCTCTCGCAGATT 857
Query 750 GAGAATGAATACGGAAATGTTGATTCAGCTTATGGCGCCGCGGCGAAAAGTTATATCAAG 809
||||||||||| |||||| |||| ||||||||||| || || || |||||||||||||||
Sbjct 858 GAGAATGAATATGGAAATATTGACTCAGCTTATGGTGCGGCTGCTAAAAGTTATATCAAG 917
Query 810 TGGTCTGCTTCTATGGCTCTTTCGTTAGATACTGGAGTACCATGGAACATGTGTCAACAA 869
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 918 TGGTCTGCTTCTATGGCTCTTTCGTTAGATACTGGAGTACCATGGAATATGTGTCAACAA 977
Query 870 GCAGATGCTCCTGATCCCATGATCAACACATGCAATGGTTTCTACTGTGACCAGTTTACT 929
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 978 ACAGATGCTCCTGATCCCATGATCAACACATGCAATGGTTTCTACTGTGACCAGTTTACA 1037
Query 930 CCTAACTCAAACAATAAACCAAAGATGTGGACAGAGAACTGGAGTGGATGGTTCCTTGGT 989
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1038 CCTAACTCAAATAATAAACCAAAGATGTGGACCGAGAACTGGAGTGGATGGTTCCTTGGT 1097
Query 990 TTTGGAGATCCTTCTCCTTACAGGCCAGTTCAAGATCTTGCATTTGCAGTCGCACGGTTT 1049
||||||||||||||||||||||| |||||| |||||||||||||||| ||||| ||||||
Sbjct 1098 TTTGGAGATCCTTCTCCTTACAGACCAGTTGAAGATCTTGCATTTGCGGTCGCGCGGTTT 1157
Query 1050 TACCAACGAGGTGGAACTTTCCAGAACTATTACATGTATCACGGTGGAACAAACTTTGAT 1109
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1158 TACCAACGAGGTGGAACGTTCCAGAACTATTACATGTATCACGGTGGAACAAACTTTGAT 1217
Query 1110 AGAACAAGTGGAGGACCTTTAATCTCTACTAGTTATGATTATGATGCTCCAATTGATGAG 1169
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1218 AGAACAAGTGGAGGACCATTAATCTCTACTAGTTATGATTATGATGCTCCAATTGATGAG 1277
Query 1170 TATGGACTTCTTAGACAACCAAAATGGGGACACTTGCGAGATCTACACAAGGCTATCAAG 1229
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1278 TATGGACTACTTAGACAACCAAAATGGGGACACTTACGAGATCTACACAAGGCTATCAAG 1337
Query 1230 CTTTGTGAAGATGCATTGATTGCCACAGATCCAACAATTTCTTCTTTGGGTTCAAATTTG 1289
||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||
Sbjct 1338 CTTTGTGAAGATGCATTGATTGCCACAGATCCAACAATTACTTCTCTAGGTTCAAATTTG 1397
Query 1290 GAGGCTGCTGTATATAAGACAGCATCTGGATCATGTGCTGCTTTTCTTGCAAATGTTGGC 1349
||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1398 GAGGCTGCTGTATATAAAACAGAATCTGGATCATGTGCTGCTTTTCTTGCAAATGTTGAC 1457
Query 1350 ACGAAATCTGATGCAACTGTGAGTTTCAATGGAGAATCATATCACTTGCCTGCATGGTCC 1409
||||| |||||||||||||||| |||||||||| |||||||| |||||||||||||||||
Sbjct 1458 ACGAAGTCTGATGCAACTGTGACTTTCAATGGAAAATCATATAACTTGCCTGCATGGTCC 1517
Query 1410 GTAAGCATCTTGCCGGATTGCAAAAATGTAGCCTTCAACACCGCAAAGATAAACTCTGCA 1469
|||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||
Sbjct 1518 GTAAGCATCTTGCCGGATTGCAAAAATGTAGCTTTCAATACCGCAAAGATAAATTCTGCA 1577
Query 1470 ACTGAGCCTACCGCATTTGCTCGTCAATCATTGAAGCCTGATGGTGGTTCATCTGCGGAG 1529
|||||| ||||||||||||||||||||||||| ||||| ||||||||||| |||||||||
Sbjct 1578 ACTGAGTCTACCGCATTTGCTCGTCAATCATTAAAGCCCGATGGTGGTTCGTCTGCGGAG 1637
Query 1530 TTAGGTTCAGAATGGAGTTACATTAAAGAACCTATTGGAATTTCCAAGGCTGATGCATTC 1589
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1638 TTAGGTTCACAATGGAGTTACATTAAAGAACCTATTGGAATTTCCAAAGCTGATGCATTC 1697
Query 1590 TTGAAACCTGGATTGCTAGAGCAGATAAACACAACAGCTGATAAAAGTGATTACTTGTGG 1649
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1698 TTGAAACCTGGATTGCTAGAGCAGATTAACACAACAGCTGATAAAAGCGATTACTTGTGG 1757
Query 1650 TACTCGCTAAGGATGGATATTAAAGGCGATGAGACTTTCCTTGACGAAGGATCTAAAGCC 1709
||||| ||||||| |||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1758 TACTCACTAAGGACGGATATAAAAGGCGATGAGACTTTCCTTGACGAGGGATCTAAAGCC 1817
Query 1710 GTCCTTCACATTGAATCTCTTGGTCAAGTGGTCTATGCTTTTATAAATGGAAAACTTGCA 1769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1818 GTCCTTCACATTGAATCTCTTGGTCAAGTGGTCTATGCTTTTATAAATGGAAAACTTGCA 1877
Query 1770 GGAAGCGGACATGGCAAACAGAAGATTTCTTTGGATATCCCGATTAATCTTGCTG-CCGG 1828
|||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||
Sbjct 1878 GGAAGCGGACATGGCAAACAGAAGATTTCTTTGGATATACCGATTAATCTTG-TAACCGG 1936
Query 1829 GAAGAACACAGTTGATCTCCTTAGTGTGACCGTAGGGCTTGCGAATTATGGAGCTTTCTT 1888
|| ||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1937 GACGAACACAATCGATCTCCTTAGTGTTACCGTAGGGCTTGCGAATTATGGAGCTTTCTT 1996
Query 1889 TGACTTAGTGGGAGCAGGAATAACCGGTCCTGTGACACTTAAAAGCGCTAAAGGTGGTAG 1948
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1997 TGACTTAGTGGGAGCAGGAATAACCGGACCTGTGACACTTAAAAGCGCTAAAGGTGGTAG 2056
Query 1949 CTCAATTGATTTGGCTTCACAGCAATGGACTTATCAGGTTGGACTCAAAGGGGAAGACAC 2008
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2057 CTCAATTGATTTGGCTTCACAGCAATGGACTTATCAGGTTGGACTCAAAGGAGAAGACAC 2116
Query 2009 AGATTTGGCAACTGTAGATTCTTCTGAATGGGTTTCAAAGTCTCCTCTGCCCACTAAACA 2068
|| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 2117 AGGTTTGGCAACTGTAGATTCTTCTGAATGGGTTTCAAAGTCTCCTTTGCCTACTAAACA 2176
Query 2069 GCCACTGATTTGGTACAAGACAACATTTGATGCTCCTTCTGGGAGGGAGCCAGTAGCGAT 2128
||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||| ||
Sbjct 2177 ACCACTTATTTGGTACAAGACGACATTTGATGCTCCTTCTGGGAGCGAGCCAGTAGCTAT 2236
Query 2129 AGACTTCACGGGTACAGGAAAGGGCATTGCATGGGTGAATGGACAGAGCATAGGTAGGTA 2188
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2237 AGACTTCACGGGTACAGGAAAGGGTATTGCATGGGTGAATGGACAGAGCATAGGTAGGTA 2296
Query 2189 CTGGCCAACCAGTATTGCTGGAAACGGCGGTTGCACAGATTCATGCGACTATAGAGGATC 2248
||||||||| ||||| |||||||| |||||||| ||||| ||||||||||||||||| ||
Sbjct 2297 CTGGCCAACTAGTATCGCTGGAAATGGCGGTTGTACAGAATCATGCGACTATAGAGGTTC 2356
Query 2249 TTACCGCGCAAACAAATGCCTCAAGAACTGCGGAAAACCTTCACAAACATTGTATCACGT 2308
|||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||| ||
Sbjct 2357 TTACCGTGCAAACAAATGCCTCAAGAACTGTGGAAAACCTTCACAGACATTGTATCATGT 2416
Query 2309 GCCTCGCTCGTGGCTAAAACCGAGTGGGAACACACTTGTTCTGTTTGAGGAGATGGGAGG 2368
||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 2417 ACCTCGCTCGTGGCTAAAACCGAGCGGGAACATACTTGTTCTGTTTGAGGAGATGGGAGG 2476
Query 2369 AGATCCAACACAAATATCATTCG-GTACAAAACAAACAGGAAGCAATCTTTGTCTAATGG 2427
||||||||||||||||||||| | | ||||||||||||||||||||||||||||||| ||
Sbjct 2477 AGATCCAACACAAATATCATTTGCG-ACAAAACAAACAGGAAGCAATCTTTGTCTAACGG 2535
Query 2428 TGTCACAGTCTCATCCACCGCCCGTGGACACATGGACTTCCGACTCAAAAATCTCTAACA 2487
||||||||||||||||||| || |||||||||||||||||||||||||| ||||| ||||
Sbjct 2536 TGTCACAGTCTCATCCACCACCGGTGGACACATGGACTTCCGACTCAAAGATCTCAAACA 2595
Query 2488 GAAACAGAACCAGACCGGTTCTTTCCTTAAAATGTCCTGTCTCCACTCAAGTGATATCTT 2547
||||||||||||| ||||||||||| || ||||| ||| |||| ||||| ||||||| ||
Sbjct 2596 GAAACAGAACCAGGCCGGTTCTTTCGTTGAAATGCCCTATCTCTACTCAGGTGATATTTT 2655
Query 2548 CTATAAAATTTGCAAGCTTTGGTACACCCCAAGGTACTTGCGGTAGCTTCACACACGGCC 2607
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 2656 CTATAAAATTTGCAAGCTTTGGTACACCCAAAGGTACTTGCGGTAGCTTCACACAAGGCC 2715
Query 2608 ATTGCAACAGCTCTCGATCTCTCTCGGTCGTCCAAAAGGCATGTATTGGATCGAGGAGTT 2667
||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 2716 ATTGCAATAGCTCTCGATCTCTCTCCCTCGTCCAAAAGGCATGTATTGGATTGAGGAGTT 2775
Query 2668 GCAACGTTGAAGTCTCGACTAAAGTCTTTGGAGACCCTTGTCGTGGTGTCATCAAGAGCT 2727
||||||||||||| ||||||| ||| || || || ||||||||||| ||| |||||||||
Sbjct 2776 GCAACGTTGAAGTATCGACTAGAGTGTTCGGGGAACCTTGTCGTGGCGTCGTCAAGAGCT 2835
Query 2728 TAGCTGTTGAAGCTTCTTGTTCATGAG 2754
|||||||||||||||||||||||||||
Sbjct 2836 TAGCTGTTGAAGCTTCTTGTTCATGAG 2862
Score = 257 bits (139), Expect = 3e-67
Identities = 189/212 (89%), Gaps = 8/212 (4%)
Strand=Plus/Plus
Query 1 TACTATACCCGCGTCTTCGTCACTCTACGAAATCTTAATCAAAC-CATTAACACTAATCC 59
|||||||||||||||||| ||||||||| ||| ||||||||||| ||||||||||||||
Sbjct 1 TACTATACCCGCGTCTTCATCACTCTACAAAAACTTAATCAAACTGATTAACACTAATCC 60
Query 60 TTTCTCTTAATCTTCTTCTTCCCCGCCATTATTCTTAAATCCAAGAACAAgacgacgacg 119
||||||||||||||||||| |||||||||| ||||||||||| ||| ||||| | ||||
Sbjct 61 TTTCTCTTAATCTTCTTCTCCCCCGCCATTCTTCTTAAATCCGAGACCAAGA--A-GACG 117
Query 120 acgacgaTGATGCAATTGCAATGCGTATACGCATAACCaaaa-aaaT-GTGATGTGTGAG 177
|||||||||||||||||||||||||||||||| | ||||||| ||| | | ||||||
Sbjct 118 ACGACGATGATGCAATTGCAATGCGTATACGCCTGACCAAAATAAAAAGCG--GTGTGAT 175
Query 178 AAAATGCAGTAACACAAAGCCGTGAAGCAACA 209
|||||||||||||||||| | |||||||||||
Sbjct 176 AAAATGCAGTAACACAAAACGGTGAAGCAACA 207
> AT1G31740.1 | Symbols: BGAL15 | beta-galactosidase 15 | chr1:11365285-11369908
REVERSE LENGTH=2361
Length=2361
Score = 211 bits (114), Expect = 3e-53
Identities = 492/668 (74%), Gaps = 52/668 (8%)
Strand=Plus/Plus
Query 561 TATGTTTGTGCTGAATGGAATTACGGTGG-TTTCCCAGTGTGG-TTGCATTTTGTTCCTG 618
|||||||| || || ||||| ||||| || ||| ||||||||| || || | || |
Sbjct 406 TATGTTTGCGCAGAGTGGAACTACGGAGGATTT-CCAGTGTGGCTT-CACAACATGCCCG 463
Query 619 GAAT-TAAGTTTC-GAACTGA-TAATGAAC--CGTTTAAGGAGGAAATGCAGAGA-TTTA 672
|||| || ||| ||||| | |||| || |||||| | | || ||||| | | ||||
Sbjct 464 GAATGGAA--TTCAGAACT-ACTAAT--ACTGCGTTTATGAATGAGATGCA-AAATTTTA 517
Query 673 CCACAAAGATTGTTGATTTGATGAAGCAAGAAAAGCTTTATGCATCACAAGGAGGGCCAA 732
| |||| ||| || || || | ||| |||| ||||||| ||||||||||||||| ||||
Sbjct 518 CGACAATGATAGTAGAAATGGTCAAGAAAGAGAAGCTTTTTGCATCACAAGGAGGTCCAA 577
Query 733 TTATTCTCT-CACAGATTGAGAATGAATACGGAAATGTTGATT-CAGCTTATGGCGCCGC 790
|||| || | | ||||||||||||||||| ||||||| ||||| | | ||||| | ||
Sbjct 578 TTATCCT-TGCTCAGATTGAGAATGAATATGGAAATG-TGATTGGATCATATGGAGAAGC 635
Query 791 GGCGAAAAG-TTATA-TCAAGTGGTCTGC-TTCTATGGCT-CTT-TCGTTAGATACTGGA 845
|| | |||| |||| || |||||| ||| | |||||| || || || ||| |||
Sbjct 636 GG-GTAAAGCATATATTC-AGTGGTGTGCAAAC-ATGGCTAATTCTC-TT-GATGTTGGT 690
Query 846 GTACCATGGAACATGTGTCAACAAGCA-GATGCTCCTGATCCCATGATCAACACATGCAA 904
|| || |||| |||||||||||||| | ||||||||| | || ||| | |||||||||||
Sbjct 691 GTTCCGTGGATCATGTGTCAACAAG-ATGATGCTCCTCAACCAATGTTAAACACATGCAA 749
Query 905 TGGTT-TCTACTGTGACCAGTTTACTCCTAACTCAA--ACAATAAACCAAAGATGTGGAC 961
||||| | || ||||| | ||| | || || ||| ||| | ||||| ||||||||
Sbjct 750 TGGTTAT-TATTGTGATAACTTTTCACC-AA-ACAACCCCAACACTCCAAAAATGTGGAC 806
Query 962 AGAGAACTGGAGTGGATGGTTCCT-TG-GTTTTGGAGATCCTTCTCCTTACAGGCCAGTT 1019
||||| |||| || ||| | | | || |||| | |||| |||| ||
Sbjct 807 TGAGAATTGGACCGGCTGG-T-ATAAGAATTGGGGAGGTAAAGATCCTCACAGAACA-AC 863
Query 1020 C-AAGATCTTGCATTTGCAGTCGCACGGTTTTACCAACGAGGTGGAACTTTCCAGAACTA 1078
| ||||| |||| ||||| || ||| | |||| |||| || |||||||||||||||||
Sbjct 864 CGAAGATGTTGCTTTTGCCGTTGCAAGATTTTTCCAAAAAGAAGGAACTTTCCAGAACTA 923
Query 1079 TTACATGTATCACGGTGGAACAAACTTTGATAGAACAAGTGGA-GGACCTTTA-ATCTCT 1136
|||||||||||| || || || |||||||||||||| | || || || | | ||| |
Sbjct 924 TTACATGTATCATGGAGGTACCAACTTTGATAGAACT-GCGGGTGGTCCGT-ACATCACA 981
Query 1137 ACTAGTTATGATTATGATGCTCCAATTGATGAGTATGG-ACTTCTTAGAC-AACCAAAAT 1194
|| | |||||||| |||||||| |||| || | ||| | || | | || |||||||||
Sbjct 982 ACAACATATGATTACGATGCTCCTCTTGACGAATTTGGTAATT-TGA-ACCAACCAAAAT 1039
Query 1195 GGGGACAC 1202
||||||
Sbjct 1040 ACGGACAC 1047
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 138059427136
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5