BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481659
Length=685
Score E
Sequences producing significant alignments: (Bits) Value
AT2G28420.1 | Symbols: | Lactoylglutathione lyase / glyoxalase... 990 0.0
> AT2G28420.1 | Symbols: | Lactoylglutathione lyase / glyoxalase
I family protein | chr2:12157923-12158791 FORWARD LENGTH=869
Length=869
Score = 990 bits (536), Expect = 0.0
Identities = 641/690 (93%), Gaps = 13/690 (2%)
Strand=Plus/Plus
Query 1 AAGCTTTGTCTCGTCGGAATCTGATGGAGGAGAAGAAGAAGAAAGGCGATGATGAATCGA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 AAGCTTTGTCTCGTCGGAATCTGATGGAGGAGAAGAAGAAGAAAGGCGATGATGAATTGA 60
Query 61 ACTCGAAAGCACCGTTAATGGCGTTGAACCATGTGTCAAGGCTTTGCAAAGACGTCAAAA 120
|||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 61 ACTCGAAACCGCCGTTAATGGCGTTGAACCATGTGTCAAGGCTTTGTAAAGACGTCAAAA 120
Query 121 AGTCTCTGGAGTTTTACACGAAGGTATTAGGGTTCGTGGAGATAGAGCGTCCAGCTTCGT 180
||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 121 AGTCTCTCGAGTTCTACACAAAGGTATTAGGGTTCGTGGAGATAGAGCGTCCAGCTTCTT 180
Query 181 TGGACTTCAACGGCGCGTGGCTTTTTAACTACGGCGTTGGGATCCATTTGGTGCAAGCCA 240
| |||||| |||| ||||||||||| |||||||||||||||||||| |||||||| ||||
Sbjct 181 TCGACTTCGACGGTGCGTGGCTTTTCAACTACGGCGTTGGGATCCACTTGGTGCAGGCCA 240
Query 241 AGGACCAAGACAAGTTACCTTCCGACACGAACCATTTGGACCCAATGGATAACCACATCT 300
|||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 241 AGGACCAAGATAAGTTACCTTCTGACACGGACCATTTGGACCCAATGGATAACCACATCT 300
Query 301 CTTTCCAGTGTGAAGATATGGAAGCTTTGGAAAAGAGGATCAAGGAGGTGAAGGTTAAGT 360
||||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||
Sbjct 301 CTTTCCAGTGTGAAGATATGGAAGCTTTGGAGAAGAGGCTCAAGGAGGTGAAGGTAAAGT 360
Query 361 ACATCAAGAGGACGGTGGGTGATGAGAAAGATGCAGCCATCGACCAGCTCTTCTTCAATG 420
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 361 ACATCAAGAGGACGGTGGGTGATGAGAAAGATGCAGCTATCGACCAGCTCTTCTTCAATG 420
Query 421 ACCCCGACGGCTTCATGGTCGAAATCTGTAACTGCGAGAATCTCGAGCTTGTTCCGCGCC 480
|||| |||||||| ||||| |||||||||||||||||||||||||| ||||| ||| |||
Sbjct 421 ACCCTGACGGCTTTATGGTTGAAATCTGTAACTGCGAGAATCTCGAACTTGTCCCGTGCC 480
Query 481 ATTCAGCCGATGCCATACACCTCCCAGAAGACCGACACGCACCTCCTGTTGCCCTCCCTG 540
|||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 481 ATTCAGCCGACGCCATACGCCTCCCAGAAGACCGACATGCACCTCCTGTTGCCCTCCCTG 540
Query 541 ACTCCG--A-C-GATAGGATGCCCCAACCCAATTCTTAATACTATT-AGACTCGTCTCGT 595
||||| | | | |||||||||||| ||||||||||||||||||| |||||||| | |
Sbjct 541 ACTCCTCCAACCG-TAGGATGCCCCAGCCCAATTCTTAATACTATTTAGACTCGT-T--T 596
Query 596 CTCGTCTCTACTTAGTACTGTGTTGTGTGCTCAGCTACCACTCTATTAATTAATGTTTGT 655
| ||||||| |||||||||||||||| ||||||| ||||||||||| |||||||||||
Sbjct 597 C--GTCTCTAGTTAGTACTGTGTTGTG--CTCAGCTCCCACTCTATTAGTTAATGTTTGT 652
Query 656 TTGGGACACCAATTCCTTCCAACCATGAGT 685
|||||||||||| |||||||||||||||||
Sbjct 653 TTGGGACACCAAGTCCTTCCAACCATGAGT 682
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33154537020
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5