BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481666
Length=2167
Score E
Sequences producing significant alignments: (Bits) Value
AT2G28390.1 | Symbols: | SAND family protein | chr2:12139580-1... 2833 0.0
> AT2G28390.1 | Symbols: | SAND family protein | chr2:12139580-12143465
REVERSE LENGTH=2170
Length=2170
Score = 2833 bits (1534), Expect = 0.0
Identities = 1829/1963 (93%), Gaps = 53/1963 (3%)
Strand=Plus/Plus
Query 1 GCAGAGAGAATCAATGAACAAGGCTTGCCATTAGAGGAGACCAACAATTTCTCTCCTCTC 60
|||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||
Sbjct 2 GCAGAGAGAATCAATGAACACGTCTTGCCATTAGAGGAGACCAACCATTTCTCTCCTCTC 61
Query 61 TCTTTGACAAATCCCTAAAATCTCTAACCGATTTCTGCAATGGCGACTTCAGATTCGAGC 120
|| ||| | ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 62 TC-TTG----A-----AAAATCTATAACCGATTTCTGCAATGGCGACTTCAGATTCGAGG 111
Query 121 TCTTCTCCTTCATCATCTGGTACCGAATTCGCCGATCCAAACCCTAGCACCGATCCAGAG 180
||||||||||||||||| | |||||||||||||||||||| |||||| |||||||||||
Sbjct 112 TCTTCTCCTTCATCATCCGACACCGAATTCGCCGATCCAAATCCTAGCTCCGATCCAGAG 171
Query 181 ACGAATTCAGAGCGTGTTCAAAGTCAATTAGAGTCAATGAATTTATCTCAACCAAGCGAA 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 172 ACGAATTCGGAGCGTGTTCAAAGTCAATTAGAGTCAATGAATTTATCTCAACCTAGCGAA 231
Query 241 GTCTCTGATGGTAGCCACACTGAATTTAGC---GGCGGCgatgatgatgatgatgatgTT 297
|||||||||||||||||||| ||||||||| |||||||||||| |||||||||| |||
Sbjct 232 GTCTCTGATGGTAGCCACACCGAATTTAGCGGTGGCGGCGATGATAATGATGATGAGGTT 291
Query 298 GCATCGGCTAACGGAAACGAAGGCGGAGTTAGCAATGGAGGTTTAGTGAGTGAAGGTGTG 357
|||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||
Sbjct 292 GCATCGGCTAACGGGAACGAAGGCGGAGTTAGCAATGGAGGTTTATTGCGTGAAGGTGTG 351
Query 358 GCGGGAATTAGCGGAGAAGAGGAAATGGAGGTTTCGTTAAGGGCGGAGAATCCGGTGGAA 417
||||||| |||| | |||| | ||||||| |||||||||||| ||||||||||||
Sbjct 352 GCGGGAACTAGC---G--GAGG--A--GAGGTTTTGTTAAGGGCGGAAAATCCGGTGGAA 402
Query 418 ATGGAGGCAGGGGAGGAGCCGCCGAGTCCGACTAGTAGCGGTTATGATGGAGAGAGAGGG 477
||||| ||||| || || || ||||||||||||||||||||||| ||||||||||||||
Sbjct 403 ATGGAAGCAGGTGAAGAACCACCGAGTCCGACTAGTAGCGGTTACGATGGAGAGAGAGGA 462
Query 478 AGTAGCGGTGGAGCTACTTCTACTTATAAAGCTGATGACGTG-AGTGAGGATGAGATTCG 536
|||||||| ||||||||||||||||||||||||||||| | | || |||||||||||| |
Sbjct 463 AGTAGCGGCGGAGCTACTTCTACTTATAAAGCTGATGATG-GAAGCGAGGATGAGATTAG 521
Query 537 GGAAGCTAATGTGGATGGTGACACTGCTTCGCAGCATGAAGCTGCGTGGTTGCCTGGAAA 596
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 522 GGAAGCTAATGTGGATGGTGACACTGCCTCGCAGCATGAAGCTGCGTGGTTGCCTGGAAA 581
Query 597 ACGCCATGTCGATGAGGATGATGCTTCTATGTCATGGAGAAAGAGGAAGAAGCATTTCTT 656
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 582 ACGCCATGTTGATGAGGATGATGCTTCTACGTCATGGAGAAAGAGGAAGAAGCATTTCTT 641
Query 657 CATTTTGAGTAACTCCGGCAAACCGATATATTCCAGATATGGAGATGAACATAAGCTTGC 716
||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 642 CATACTGAGTAACTCAGGCAAACCGATATATTCCAGATATGGAGATGAACATAAGCTTGC 701
Query 717 TGGATTTTCAGCTACTCTTCAAGCTATTATTTCTTTTGTGGAGAATGGTGGTGACCGTGT 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 702 TGGATTTTCAGCTACTCTTCAAGCTATTATTTCTTTTGTGGAGAATGGTGGTGACCGTGT 761
Query 777 CAATTTAGTCAAGGCAGGAAAACACCAGGTTGTCTTTCTCGTGAAGGGGCCAATATACCT 836
||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||
Sbjct 762 CAACTTAGTCAAGGCAGGAAATCACCAGGTTGTCTTTCTCGTTAAGGGGCCAATATATCT 821
Query 837 GGTCTGCATCAGCTGTACAGATGAAACATATGAGTATTTAAGGGGGCAGTTGGATCTTCT 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 822 GGTCTGCATCAGCTGTACAGATGAAACATATGAGTATTTAAGGGGGCAGTTGGATCTTCT 881
Query 897 ATATGGTCAGATGATACTAATTTTAACAAAGTCAATAGACAGATGTTTCGAGAAGAATGC 956
|||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct 882 ATATGGTCAGATGATACTAATTTTAACAAAATCAATAGACAGATGTTTTGAAAAGAATGC 941
Query 957 AAAGTTCGATATGACACCCTTGCTTGGAGGGACAGATGCTGTCTTCTCATCTCTTGTCCA 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 942 AAAGTTCGATATGACACCCTTGCTTGGAGGGACAGATGCTGTCTTCTCATCTCTTGTCCA 1001
Query 1017 TTCATTTAGCTGGAACCCAGCTACATTTCTTCATGCCTATACTTGTCTTCCCCTTCCGTA 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1002 TTCATTTAGCTGGAACCCAGCTACATTTCTTCATGCCTATACTTGTCTTCCCCTTCCATA 1061
Query 1077 TGCATTAAGGCAAGCTACGGGGACCATATTGCAAGACGTTTGCGCGTCTGGTGTCTTGTT 1136
||| |||||||||||||| || |||||||||||||| |||||||||||||||||||| ||
Sbjct 1062 TGCGTTAAGGCAAGCTACAGGAACCATATTGCAAGAAGTTTGCGCGTCTGGTGTCTTATT 1121
Query 1137 CTCACTACTAATGTGCAGACACAAGGTTGTCAGTCTTGCTGGTGCACAGAAAGCGTCTCT 1196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1122 CTCACTACTAATGTGCAGACACAAGGTTGTCAGTCTTGCTGGTGCACAGAAAGCGTCTCT 1181
Query 1197 CCATCCCGATGACTTGCTTCTACTCTCAAATTTTGTCATGTCATCAGAATCATTCAGGCA 1256
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1182 CCATCCCGATGACTTGCTTCTACTCTCAAATTTTGTCATGTCATCAGAATCATTCAGG-A 1240
Query 1257 AGTGCTAAATATTTTGTCCATCAGAACATCAGAATCTTTCTCACCAATCTGCCTACCGAG 1316
| | | | | ||| || | || |||||||||||||||||| ||
Sbjct 1241 ----C-A--T-------C-A---GAA--TC----T-TT-CTCACCAATCTGCCTACCAAG 1274
Query 1317 ATACAACGCCCAGGCCTTTTTACATGCTTATGTCCACTTCTTTGATGATGATACATATGT 1376
||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1275 ATACAACGCTCAGGCCTTTTTGCATGCCTATGTCCACTTCTTTGATGATGATACATATGT 1334
Query 1377 AATATTGCTTACTACACGTTCAGACGCCTTCCATCATCTCAAAGATTGCAGGGTTCGCAT 1436
|||||||||||| ||||||||||| || |||||||||||||||||||||||||| ||| |
Sbjct 1335 AATATTGCTTACCACACGTTCAGATGCGTTCCATCATCTCAAAGATTGCAGGGTACGCCT 1394
Query 1437 TGAGACTGTTCTTCTCAAGTCAAATATTCTAAGTGTGGTTCAAAGATCAATCGCGGAAGG 1496
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1395 TGAGGCTGTTCTTCTCAAGTCAAATATTCTAAGTGTGGTTCAAAGATCAATCGCGGAAGG 1454
Query 1497 TGGAATGCGTGTTGAAGATTTACCTATAGACCGCAGGCGTCGCTCATCTACTACTAATCA 1556
||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||
Sbjct 1455 TGGAATGCGTGTTGAAGATGTACCAATAGACCGCAGGCGTCGATCATCTACTACTAATCA 1514
Query 1557 GGGACAAGA-TACAGCTGTTCCAGAGGTATCTGTGGGAACCGGAGGTCCCTGTGGACTTT 1615
| |||||| | || ||| ||| || |||||||||||||||||||||||| ||||||||
Sbjct 1515 AGAACAAGACT-CACCTGGTCCCGACATATCTGTGGGAACCGGAGGTCCCTTTGGACTTT 1573
Query 1616 GGCATTTCATGTACCGTAGTATATACTTAGATCAATACATATCCTCTGAATTCTCACCTC 1675
|||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
Sbjct 1574 GGCATTTCATGTACCGTAGTATATACTTAGATCAATACATTTCCTCGGAATTCTCACCCC 1633
Query 1676 CAGTAACTAGTCACAGACAGCAGAAAAGTCTATATCGAGCATACCAGAAACTTTATGCTT 1735
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1634 CAGTAACTAGTCACAGACAACAGAAAAGTCTATATCGAGCATACCAGAAACTTTATGCTT 1693
Query 1736 CAATGCATGTAAAAGGATTGGGACCTCACAAGACTCAATATAGAAGAGATGAAAACTACA 1795
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1694 CAATGCATGTAAAAGGATTGGGACCCCACAAGACTCAATATAGAAGAGATGAAAACTACA 1753
Query 1796 CTCTTCTATGTTGGGTTACACCAGATTTTGAACTCTATGCAGCATTTGATCCACTTGCAG 1855
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1754 CTCTTCTATGTTGGGTCACACCAGATTTTGAACTCTATGCAGCATTTGATCCACTTGCAG 1813
Query 1856 ACAAGGCGATGGCGATAAAGATATGCAATCAGGTATGCCAAAGGGTAAAAGATGTAGAGA 1915
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1814 ACAAGGCGATGGCGATAAAGATATGCAATCAGGTGTGCCAAAGGGTAAAAGATGTGGAGA 1873
Query 1916 ATGAAATGTTCTTGCAAGGAGCTAGTCCTTTCTCTTGGTGATA 1958
||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1874 ATGAAGTGTTCTTGCAAGGAGCTAGTCCTTTCTCTTGGTGATA 1916
Score = 287 bits (155), Expect = 3e-76
Identities = 196/213 (92%), Gaps = 14/213 (7%)
Strand=Plus/Plus
Query 1965 TCTTTCTACTATTTTGACCCCCTATATTGTGCTAGTACCACCCACCTTAATAAGGCAATA 2024
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1961 TCTTTCTACTGGTTTGACCCCCTATATTGTGCTAGTACCACCCACCTTAATAAGGCAATA 2020
Query 2025 ATGTAATTGTTGTACCCAGAAACCCTTGAGAGAAAAGCTATTTCATTGCCTTTATTGTTA 2084
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2021 ATGTAATTGT---ACCCAGAAACCCTTGAGAGAAA-GCTATTTCATTGCCTTTATTGTTA 2076
Query 2085 TTAATTAGCTTGAATAGTCAAAATTGAGTTGATGTAGACAAAAATTGAAA--A---GA-- 2137
|||||||||||||||||||||||||||| ||||||||||||||||||||| | ||
Sbjct 2077 TTAATTAGCTTGAATAGTCAAAATTGAGATGATGTAGACAAAAATTGAAACTATTTGAAA 2136
Query 2138 -G--AGCAATAATATTAAGGTTTTGATGGAAGG 2167
| |||||||||||||||||||||||||||||
Sbjct 2137 AGTGAGCAATAATATTAAGGTTTTGATGGAAGG 2169
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107479366845
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5