BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg481666 Length=2167 Score E Sequences producing significant alignments: (Bits) Value AT2G28390.1 | Symbols: | SAND family protein | chr2:12139580-1... 2833 0.0 > AT2G28390.1 | Symbols: | SAND family protein | chr2:12139580-12143465 REVERSE LENGTH=2170 Length=2170 Score = 2833 bits (1534), Expect = 0.0 Identities = 1829/1963 (93%), Gaps = 53/1963 (3%) Strand=Plus/Plus Query 1 GCAGAGAGAATCAATGAACAAGGCTTGCCATTAGAGGAGACCAACAATTTCTCTCCTCTC 60 |||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||| Sbjct 2 GCAGAGAGAATCAATGAACACGTCTTGCCATTAGAGGAGACCAACCATTTCTCTCCTCTC 61 Query 61 TCTTTGACAAATCCCTAAAATCTCTAACCGATTTCTGCAATGGCGACTTCAGATTCGAGC 120 || ||| | ||||||| ||||||||||||||||||||||||||||||||||| Sbjct 62 TC-TTG----A-----AAAATCTATAACCGATTTCTGCAATGGCGACTTCAGATTCGAGG 111 Query 121 TCTTCTCCTTCATCATCTGGTACCGAATTCGCCGATCCAAACCCTAGCACCGATCCAGAG 180 ||||||||||||||||| | |||||||||||||||||||| |||||| ||||||||||| Sbjct 112 TCTTCTCCTTCATCATCCGACACCGAATTCGCCGATCCAAATCCTAGCTCCGATCCAGAG 171 Query 181 ACGAATTCAGAGCGTGTTCAAAGTCAATTAGAGTCAATGAATTTATCTCAACCAAGCGAA 240 |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 172 ACGAATTCGGAGCGTGTTCAAAGTCAATTAGAGTCAATGAATTTATCTCAACCTAGCGAA 231 Query 241 GTCTCTGATGGTAGCCACACTGAATTTAGC---GGCGGCgatgatgatgatgatgatgTT 297 |||||||||||||||||||| ||||||||| |||||||||||| |||||||||| ||| Sbjct 232 GTCTCTGATGGTAGCCACACCGAATTTAGCGGTGGCGGCGATGATAATGATGATGAGGTT 291 Query 298 GCATCGGCTAACGGAAACGAAGGCGGAGTTAGCAATGGAGGTTTAGTGAGTGAAGGTGTG 357 |||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||| Sbjct 292 GCATCGGCTAACGGGAACGAAGGCGGAGTTAGCAATGGAGGTTTATTGCGTGAAGGTGTG 351 Query 358 GCGGGAATTAGCGGAGAAGAGGAAATGGAGGTTTCGTTAAGGGCGGAGAATCCGGTGGAA 417 ||||||| |||| | |||| | ||||||| |||||||||||| |||||||||||| Sbjct 352 GCGGGAACTAGC---G--GAGG--A--GAGGTTTTGTTAAGGGCGGAAAATCCGGTGGAA 402 Query 418 ATGGAGGCAGGGGAGGAGCCGCCGAGTCCGACTAGTAGCGGTTATGATGGAGAGAGAGGG 477 ||||| ||||| || || || ||||||||||||||||||||||| |||||||||||||| Sbjct 403 ATGGAAGCAGGTGAAGAACCACCGAGTCCGACTAGTAGCGGTTACGATGGAGAGAGAGGA 462 Query 478 AGTAGCGGTGGAGCTACTTCTACTTATAAAGCTGATGACGTG-AGTGAGGATGAGATTCG 536 |||||||| ||||||||||||||||||||||||||||| | | || |||||||||||| | Sbjct 463 AGTAGCGGCGGAGCTACTTCTACTTATAAAGCTGATGATG-GAAGCGAGGATGAGATTAG 521 Query 537 GGAAGCTAATGTGGATGGTGACACTGCTTCGCAGCATGAAGCTGCGTGGTTGCCTGGAAA 596 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 522 GGAAGCTAATGTGGATGGTGACACTGCCTCGCAGCATGAAGCTGCGTGGTTGCCTGGAAA 581 Query 597 ACGCCATGTCGATGAGGATGATGCTTCTATGTCATGGAGAAAGAGGAAGAAGCATTTCTT 656 ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 582 ACGCCATGTTGATGAGGATGATGCTTCTACGTCATGGAGAAAGAGGAAGAAGCATTTCTT 641 Query 657 CATTTTGAGTAACTCCGGCAAACCGATATATTCCAGATATGGAGATGAACATAAGCTTGC 716 ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 642 CATACTGAGTAACTCAGGCAAACCGATATATTCCAGATATGGAGATGAACATAAGCTTGC 701 Query 717 TGGATTTTCAGCTACTCTTCAAGCTATTATTTCTTTTGTGGAGAATGGTGGTGACCGTGT 776 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 702 TGGATTTTCAGCTACTCTTCAAGCTATTATTTCTTTTGTGGAGAATGGTGGTGACCGTGT 761 Query 777 CAATTTAGTCAAGGCAGGAAAACACCAGGTTGTCTTTCTCGTGAAGGGGCCAATATACCT 836 ||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||| || Sbjct 762 CAACTTAGTCAAGGCAGGAAATCACCAGGTTGTCTTTCTCGTTAAGGGGCCAATATATCT 821 Query 837 GGTCTGCATCAGCTGTACAGATGAAACATATGAGTATTTAAGGGGGCAGTTGGATCTTCT 896 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 822 GGTCTGCATCAGCTGTACAGATGAAACATATGAGTATTTAAGGGGGCAGTTGGATCTTCT 881 Query 897 ATATGGTCAGATGATACTAATTTTAACAAAGTCAATAGACAGATGTTTCGAGAAGAATGC 956 |||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||| Sbjct 882 ATATGGTCAGATGATACTAATTTTAACAAAATCAATAGACAGATGTTTTGAAAAGAATGC 941 Query 957 AAAGTTCGATATGACACCCTTGCTTGGAGGGACAGATGCTGTCTTCTCATCTCTTGTCCA 1016 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 942 AAAGTTCGATATGACACCCTTGCTTGGAGGGACAGATGCTGTCTTCTCATCTCTTGTCCA 1001 Query 1017 TTCATTTAGCTGGAACCCAGCTACATTTCTTCATGCCTATACTTGTCTTCCCCTTCCGTA 1076 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1002 TTCATTTAGCTGGAACCCAGCTACATTTCTTCATGCCTATACTTGTCTTCCCCTTCCATA 1061 Query 1077 TGCATTAAGGCAAGCTACGGGGACCATATTGCAAGACGTTTGCGCGTCTGGTGTCTTGTT 1136 ||| |||||||||||||| || |||||||||||||| |||||||||||||||||||| || Sbjct 1062 TGCGTTAAGGCAAGCTACAGGAACCATATTGCAAGAAGTTTGCGCGTCTGGTGTCTTATT 1121 Query 1137 CTCACTACTAATGTGCAGACACAAGGTTGTCAGTCTTGCTGGTGCACAGAAAGCGTCTCT 1196 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1122 CTCACTACTAATGTGCAGACACAAGGTTGTCAGTCTTGCTGGTGCACAGAAAGCGTCTCT 1181 Query 1197 CCATCCCGATGACTTGCTTCTACTCTCAAATTTTGTCATGTCATCAGAATCATTCAGGCA 1256 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1182 CCATCCCGATGACTTGCTTCTACTCTCAAATTTTGTCATGTCATCAGAATCATTCAGG-A 1240 Query 1257 AGTGCTAAATATTTTGTCCATCAGAACATCAGAATCTTTCTCACCAATCTGCCTACCGAG 1316 | | | | | ||| || | || |||||||||||||||||| || Sbjct 1241 ----C-A--T-------C-A---GAA--TC----T-TT-CTCACCAATCTGCCTACCAAG 1274 Query 1317 ATACAACGCCCAGGCCTTTTTACATGCTTATGTCCACTTCTTTGATGATGATACATATGT 1376 ||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct 1275 ATACAACGCTCAGGCCTTTTTGCATGCCTATGTCCACTTCTTTGATGATGATACATATGT 1334 Query 1377 AATATTGCTTACTACACGTTCAGACGCCTTCCATCATCTCAAAGATTGCAGGGTTCGCAT 1436 |||||||||||| ||||||||||| || |||||||||||||||||||||||||| ||| | Sbjct 1335 AATATTGCTTACCACACGTTCAGATGCGTTCCATCATCTCAAAGATTGCAGGGTACGCCT 1394 Query 1437 TGAGACTGTTCTTCTCAAGTCAAATATTCTAAGTGTGGTTCAAAGATCAATCGCGGAAGG 1496 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1395 TGAGGCTGTTCTTCTCAAGTCAAATATTCTAAGTGTGGTTCAAAGATCAATCGCGGAAGG 1454 Query 1497 TGGAATGCGTGTTGAAGATTTACCTATAGACCGCAGGCGTCGCTCATCTACTACTAATCA 1556 ||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||| Sbjct 1455 TGGAATGCGTGTTGAAGATGTACCAATAGACCGCAGGCGTCGATCATCTACTACTAATCA 1514 Query 1557 GGGACAAGA-TACAGCTGTTCCAGAGGTATCTGTGGGAACCGGAGGTCCCTGTGGACTTT 1615 | |||||| | || ||| ||| || |||||||||||||||||||||||| |||||||| Sbjct 1515 AGAACAAGACT-CACCTGGTCCCGACATATCTGTGGGAACCGGAGGTCCCTTTGGACTTT 1573 Query 1616 GGCATTTCATGTACCGTAGTATATACTTAGATCAATACATATCCTCTGAATTCTCACCTC 1675 |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| | Sbjct 1574 GGCATTTCATGTACCGTAGTATATACTTAGATCAATACATTTCCTCGGAATTCTCACCCC 1633 Query 1676 CAGTAACTAGTCACAGACAGCAGAAAAGTCTATATCGAGCATACCAGAAACTTTATGCTT 1735 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1634 CAGTAACTAGTCACAGACAACAGAAAAGTCTATATCGAGCATACCAGAAACTTTATGCTT 1693 Query 1736 CAATGCATGTAAAAGGATTGGGACCTCACAAGACTCAATATAGAAGAGATGAAAACTACA 1795 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1694 CAATGCATGTAAAAGGATTGGGACCCCACAAGACTCAATATAGAAGAGATGAAAACTACA 1753 Query 1796 CTCTTCTATGTTGGGTTACACCAGATTTTGAACTCTATGCAGCATTTGATCCACTTGCAG 1855 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1754 CTCTTCTATGTTGGGTCACACCAGATTTTGAACTCTATGCAGCATTTGATCCACTTGCAG 1813 Query 1856 ACAAGGCGATGGCGATAAAGATATGCAATCAGGTATGCCAAAGGGTAAAAGATGTAGAGA 1915 |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| Sbjct 1814 ACAAGGCGATGGCGATAAAGATATGCAATCAGGTGTGCCAAAGGGTAAAAGATGTGGAGA 1873 Query 1916 ATGAAATGTTCTTGCAAGGAGCTAGTCCTTTCTCTTGGTGATA 1958 ||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1874 ATGAAGTGTTCTTGCAAGGAGCTAGTCCTTTCTCTTGGTGATA 1916 Score = 287 bits (155), Expect = 3e-76 Identities = 196/213 (92%), Gaps = 14/213 (7%) Strand=Plus/Plus Query 1965 TCTTTCTACTATTTTGACCCCCTATATTGTGCTAGTACCACCCACCTTAATAAGGCAATA 2024 |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1961 TCTTTCTACTGGTTTGACCCCCTATATTGTGCTAGTACCACCCACCTTAATAAGGCAATA 2020 Query 2025 ATGTAATTGTTGTACCCAGAAACCCTTGAGAGAAAAGCTATTTCATTGCCTTTATTGTTA 2084 |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 2021 ATGTAATTGT---ACCCAGAAACCCTTGAGAGAAA-GCTATTTCATTGCCTTTATTGTTA 2076 Query 2085 TTAATTAGCTTGAATAGTCAAAATTGAGTTGATGTAGACAAAAATTGAAA--A---GA-- 2137 |||||||||||||||||||||||||||| ||||||||||||||||||||| | || Sbjct 2077 TTAATTAGCTTGAATAGTCAAAATTGAGATGATGTAGACAAAAATTGAAACTATTTGAAA 2136 Query 2138 -G--AGCAATAATATTAAGGTTTTGATGGAAGG 2167 | ||||||||||||||||||||||||||||| Sbjct 2137 AGTGAGCAATAATATTAAGGTTTTGATGGAAGG 2169 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 107479366845 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5