BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg481667 Length=1778 Score E Sequences producing significant alignments: (Bits) Value AT2G28380.1 | Symbols: DRB2 | dsRNA-binding protein 2 | chr2:12... 2274 0.0 > AT2G28380.1 | Symbols: DRB2 | dsRNA-binding protein 2 | chr2:12133811-12136180 REVERSE LENGTH=1857 Length=1857 Score = 2274 bits (1231), Expect = 0.0 Identities = 1656/1843 (90%), Gaps = 102/1843 (6%) Strand=Plus/Plus Query 1 ctctctctctatctctctGCAAAAACCCTAAATTTCCTCCGATTTCACCATCTTCAATCT 60 |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 34 CTCTCTCTATCTCTCTCTGCAAAAACCCTAAATTTCCTCCGATTTCACCATCTTCAATCT 93 Query 61 CATTCACACCCAAACTTAGCCTCTTAATCACTCACCAAGCAAAACCCTCCAACGATTTTC 120 | ||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||| Sbjct 94 CCTTCACACCCCAACTTAGCCTCTTAATCACTCCCCAAGCTAAACCCTCCAACGATTTTC 153 Query 121 CATGATTGGAAGATATAGAAG-CAGAGAGATGAAGAAAAAGCCCTAAAAACCGAACCTTT 179 ||||||| ||||||| || || | || |||||||||||||||||||||||| || |||| Sbjct 154 CATGATTCGAAGATACAG-AGCCTTAGCGATGAAGAAAAAGCCCTAAAAACCAAAGCTTT 212 Query 180 GATCTCTCCGAAATCGGA------------G--T--T---TTTGG-TTTCGAAAATGTAT 219 |||||||||||||||||| | | | ||||| ||||| |||||||| Sbjct 213 GATCTCTCCGAAATCGGAGTTTCTTTCTTTGTTTGGTAAATTTGGTTTTCG-AAATGTAT 271 Query 220 AAGAACCAGCTACAAGAGTTGGCGCAGAGAAGCTGCTTTAATCTTCCTTCGTATACTTGT 279 ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| Sbjct 272 AAGAACCAGCTACAAGAGTTGGCTCAGAGGAGCTGCTTTAATCTTCCTTCGTATACTTGT 331 Query 280 ATTAGAGAAGGTCCTGACCACGCGCCGCGATTCAAGGCTACTGTTAACTTTAACGGTGAG 339 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 332 ATTAGGGAAGGTCCTGACCACGCGCCGCGATTCAAGGCTACTGTTAACTTTAACGGCGAG 391 Query 340 ATCTTTGAGAGTCCTCAGTATTGTTCTACTCTTCGTCAAGCTGAGCACTCTGCTGCTGAA 399 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 392 ATCTTTGAGAGTCCTCAGTATTGTTCTACTCTTCGTCAAGCTGAACACTCTGCTGCTGAA 451 Query 400 GTTGCTCTCAATGCTCTCTCTAATCGTGGTCCTTCTCACTCTCTTGCATCCAGGATCTTG 459 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 452 GTTGCTCTCAATGCTCTCTCTAATCGTGGTCCTTCTCACTCTCTTGCCGCCAGGATCTTG 511 Query 460 GATGAGACTGGTGTGTATAAGAATCTGTTGCAAGAAATAGCTCAAAGAGTGGGAGCTCCT 519 |||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 512 GATGAGACGGGTGTGTATAAGAATCTTTTGCAAGAGATAGCTCAAAGAGTGGGAGCTCCT 571 Query 520 TTACCGCGATACACGACCTTCAGGTCTGGGCTTGGACACCAACCTGTGTTTACTGGTACT 579 ||||||||||| || || |||||||| || ||||| |||||||||||||||||||||||| Sbjct 572 TTACCGCGATATACTACTTTCAGGTCAGGTCTTGGTCACCAACCTGTGTTTACTGGTACT 631 Query 580 GTAGAATTGGCTGGAATCACATTCACTGGAGATCCAGCTAAGAATAAGAAGCAAGCAGAG 639 ||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||| Sbjct 632 GTAGAATTGGCTGGAATTACGTTCACTGGAGATCCAGCTAAGAACAAGAAGCAAGCAGAG 691 Query 640 AAGAATGCTGCTATGGCTGCTTGGTCTTCCCTAAAACAATTGGCAAAAGAAACTTCAAGT 699 ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 692 AAGAATGCTGCAATGGCTGCTTGGTCTTCCCTAAAACAATTGGCAAAAGAAACATCAAGT 751 Query 700 TCAATGCCTGAGCCTGAGAACATTGACGAACTAGAACAGGTGATTATAGCAAGAGCTTTG 759 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 752 TCAATGCCTGAGCCTGAGAACATTGACGAACTAGAACAGGTGATTATAGCAAGAGCTTTG 811 Query 760 ATAAACTATCGTATCAAGGAAAATATTGGTACAGGAAGCTCCTCGAGTGCCCCGGTTCCA 819 ||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||| Sbjct 812 ATAAACTATCGTATCAAGGAAAACATTGGCACAGGAAGCTCCTCGAGTGCCCCAGTTCCA 871 Query 820 TTTGCAAAGAAGTTCTTTATGCAGAACCCTAGACCGACAAGTCCACAGCCTTCTCCTGCT 879 |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| Sbjct 872 TTTGCAAAGAAGTTCTTTATGCAGAACCTTAGACCAACAAGTCCACAGCCTTCTCCTGCA 931 Query 880 ACCACATCGAGAATCTTACCCTTTATTTGCCCAAAACAACCTTCCAGAAGCAGCAG---A 936 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 932 ACCACATCGAGAATCTTACCCTTTATTTGCCCAAAACAACCTTCCAGAAGCAGCAGATCA 991 Query 937 TCCTTAGCAGCAAATTCCGGTATTGACAGAATTATGGCAGCAGCCTTGGAAAGTCGCAGC 996 ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 992 TCCTTAGCAGCAACTTCCGGTATTGACAGAATTATGGCAGCAGCCTTGGAAAGCCGCAGC 1051 Query 997 TACCAGCGGCCTCAGCAGAGATTTGCAAACCCAGGCACAGCAGCTCAGCCTTATGTTCGT 1056 |||||||||||||||||||||||| ||| | | || ||||||||||| | Sbjct 1052 TACCAGCGGCCTCAGCAGAGATTT----------GCA-A--A--TCCGCCTTATGTTCCT 1096 Query 1057 ATGAGAC-ATTTAAGATCACCATGCCATGGGATGGCTCCACCTGTCACAATCAGAACCGC 1115 ||||| | |||| ||||| | ||||||||||||||||||||||||||||||||||||||| Sbjct 1097 ATGAGGCAATTT-AGATCGCAATGCCATGGGATGGCTCCACCTGTCACAATCAGAACCGC 1155 Query 1116 TGTACCGGTCTTCTCTGCACCTCCAATGCCTCCTCCTCCATGTACAAACAACACTCAGCT 1175 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1156 TGTACCGGTCTTCTCTGCACCTCCAATGCCTCCTCCACCATGTACAAACAACACTCAGCT 1215 Query 1176 ACCTTCTTCTGTCTATGTGCCATCGCTGATGCGAACTGCACCACCTGTGAGAATCGCACC 1235 |||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||| || Sbjct 1216 ACCTTCTTCTGTGTATGTCCCATCGCTGATGCGAACTGCACCACCTGTGAGGATCGCGCC 1275 Query 1236 ACCTGTCACAATCAGAACCGCGGTGCCCGTTTTTGCTTCTGCGCCACCGGTTAGAATTAG 1295 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1276 GCCTGTCACAATCAGAACCGCGGTGCCCGTATTTGCTTCTGCGCCACCGGTTAGAATT-- 1333 Query 1296 AAAAGTGGATATCCAAACTGCTGTGAAGCCCACAGTTGAGGTAGGAGAAACCCAG-GTAT 1354 | || | | | |||||||||||||||||||||| ||||||||||| | ||| Sbjct 1334 ---A---GA-A--C---C-GCTGTGAAGCCCACAGTTGAGGCAGGAGAAACCC-GCATAT 1379 Query 1355 CATTGGTCCAAGAAAAGGAGGAGAGTATTCCAGTCTTGCCTGATACTCTTGAAATTGGAG 1414 ||| ||||||| ||| |||||||||| |||||||||||||||| |||||||||||||| Sbjct 1380 CATCAGTCCAAG-AAA--AGGAGAGTATACCAGTCTTGCCTGATAGTCTTGAAATTGGAG 1436 Query 1415 AAGTAGGAATTACTATACCAATTTCAGA----GAG-----A--G----A-GAAAAC-AG- 1456 || ||||| ||||||| ||||| |||| ||| | | | |||| | || Sbjct 1437 TAGAAGGAAGTACTATAACAATTACAGATTGTGAGAAAACAGCGTCAAAGGAAACCGAGA 1496 Query 1457 CTGC--A----AAGGACTCATCGAAAGGAGAAGCGGAGACAGCAAGAGAGCGACTGGAGT 1510 || | ||||| ||||||||||||||| |||||||||||||||||||||||||| Sbjct 1497 GAGCAGAGTTTAAGGATTCATCGAAAGGAGAACCGGAGACAGCAAGAGAGCGACTGGAGA 1556 Query 1511 ACCTAAAAATCTGATGTCTTGAGGACCGTCTCTGAGTTTAG--TTTTTTGAGGTTGGTTT 1568 ||||||| |||||||| ||||| ||| ||||||| |||||| ||||||||||||||||| Sbjct 1557 ACCTAAAGATCTGATGCCTTGAAGACTGTCTCTGGGTTTAGTTTTTTTTGAGGTTGGTTT 1616 Query 1569 CTGAAAATTGTTACATTAGTAA--TCGTCCGTTATTATACTCGGTGGATCGAGTAGTTTG 1626 |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| Sbjct 1617 CTGAAAATTGTTACATTAGTAATCTCGTTCGTTATTATACTCGGTGGATCGAGTAGTTTG 1676 Query 1627 ATAATCCGAAAGATTTGTATTATATTGGG-AGTTTTAGGAGGAACCTGGCCATCTCTGGA 1685 ||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||| Sbjct 1677 ATAATCCGAAAGATTTGTATTATATTGGGGAGTTTTGGGAAGAACCTGGCCATCTCTGGA 1736 Query 1686 TTGTAGAATTGTATCAGTTTCACTTTCTATTCTGTTTGTTTGTGTCCTTTTT---AT--- 1739 ||||||||||||||||||||| ||| |||||| ||||||||||||||||||| || Sbjct 1737 TTGTAGAATTGTATCAGTTTCGCTTCCTATTCAGTTTGTTTGTGTCCTTTTTCTCATCTT 1796 Query 1740 --A-AA-TCCGTTACCTATCGTCGTTCCAGAAGAATCAAGCTC 1778 | || || |||||||||||| ||||||| |||||||||||| Sbjct 1797 TTATAAATCTGTTACCTATCGTTGTTCCAGCAGAATCAAGCTC 1839 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 87951354840 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5