BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481667
Length=1778
Score E
Sequences producing significant alignments: (Bits) Value
AT2G28380.1 | Symbols: DRB2 | dsRNA-binding protein 2 | chr2:12... 2274 0.0
> AT2G28380.1 | Symbols: DRB2 | dsRNA-binding protein 2 | chr2:12133811-12136180
REVERSE LENGTH=1857
Length=1857
Score = 2274 bits (1231), Expect = 0.0
Identities = 1656/1843 (90%), Gaps = 102/1843 (6%)
Strand=Plus/Plus
Query 1 ctctctctctatctctctGCAAAAACCCTAAATTTCCTCCGATTTCACCATCTTCAATCT 60
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 34 CTCTCTCTATCTCTCTCTGCAAAAACCCTAAATTTCCTCCGATTTCACCATCTTCAATCT 93
Query 61 CATTCACACCCAAACTTAGCCTCTTAATCACTCACCAAGCAAAACCCTCCAACGATTTTC 120
| ||||||||| ||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 94 CCTTCACACCCCAACTTAGCCTCTTAATCACTCCCCAAGCTAAACCCTCCAACGATTTTC 153
Query 121 CATGATTGGAAGATATAGAAG-CAGAGAGATGAAGAAAAAGCCCTAAAAACCGAACCTTT 179
||||||| ||||||| || || | || |||||||||||||||||||||||| || ||||
Sbjct 154 CATGATTCGAAGATACAG-AGCCTTAGCGATGAAGAAAAAGCCCTAAAAACCAAAGCTTT 212
Query 180 GATCTCTCCGAAATCGGA------------G--T--T---TTTGG-TTTCGAAAATGTAT 219
|||||||||||||||||| | | | ||||| ||||| ||||||||
Sbjct 213 GATCTCTCCGAAATCGGAGTTTCTTTCTTTGTTTGGTAAATTTGGTTTTCG-AAATGTAT 271
Query 220 AAGAACCAGCTACAAGAGTTGGCGCAGAGAAGCTGCTTTAATCTTCCTTCGTATACTTGT 279
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 272 AAGAACCAGCTACAAGAGTTGGCTCAGAGGAGCTGCTTTAATCTTCCTTCGTATACTTGT 331
Query 280 ATTAGAGAAGGTCCTGACCACGCGCCGCGATTCAAGGCTACTGTTAACTTTAACGGTGAG 339
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 332 ATTAGGGAAGGTCCTGACCACGCGCCGCGATTCAAGGCTACTGTTAACTTTAACGGCGAG 391
Query 340 ATCTTTGAGAGTCCTCAGTATTGTTCTACTCTTCGTCAAGCTGAGCACTCTGCTGCTGAA 399
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 392 ATCTTTGAGAGTCCTCAGTATTGTTCTACTCTTCGTCAAGCTGAACACTCTGCTGCTGAA 451
Query 400 GTTGCTCTCAATGCTCTCTCTAATCGTGGTCCTTCTCACTCTCTTGCATCCAGGATCTTG 459
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 452 GTTGCTCTCAATGCTCTCTCTAATCGTGGTCCTTCTCACTCTCTTGCCGCCAGGATCTTG 511
Query 460 GATGAGACTGGTGTGTATAAGAATCTGTTGCAAGAAATAGCTCAAAGAGTGGGAGCTCCT 519
|||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 512 GATGAGACGGGTGTGTATAAGAATCTTTTGCAAGAGATAGCTCAAAGAGTGGGAGCTCCT 571
Query 520 TTACCGCGATACACGACCTTCAGGTCTGGGCTTGGACACCAACCTGTGTTTACTGGTACT 579
||||||||||| || || |||||||| || ||||| ||||||||||||||||||||||||
Sbjct 572 TTACCGCGATATACTACTTTCAGGTCAGGTCTTGGTCACCAACCTGTGTTTACTGGTACT 631
Query 580 GTAGAATTGGCTGGAATCACATTCACTGGAGATCCAGCTAAGAATAAGAAGCAAGCAGAG 639
||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||
Sbjct 632 GTAGAATTGGCTGGAATTACGTTCACTGGAGATCCAGCTAAGAACAAGAAGCAAGCAGAG 691
Query 640 AAGAATGCTGCTATGGCTGCTTGGTCTTCCCTAAAACAATTGGCAAAAGAAACTTCAAGT 699
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 692 AAGAATGCTGCAATGGCTGCTTGGTCTTCCCTAAAACAATTGGCAAAAGAAACATCAAGT 751
Query 700 TCAATGCCTGAGCCTGAGAACATTGACGAACTAGAACAGGTGATTATAGCAAGAGCTTTG 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 752 TCAATGCCTGAGCCTGAGAACATTGACGAACTAGAACAGGTGATTATAGCAAGAGCTTTG 811
Query 760 ATAAACTATCGTATCAAGGAAAATATTGGTACAGGAAGCTCCTCGAGTGCCCCGGTTCCA 819
||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||
Sbjct 812 ATAAACTATCGTATCAAGGAAAACATTGGCACAGGAAGCTCCTCGAGTGCCCCAGTTCCA 871
Query 820 TTTGCAAAGAAGTTCTTTATGCAGAACCCTAGACCGACAAGTCCACAGCCTTCTCCTGCT 879
|||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 872 TTTGCAAAGAAGTTCTTTATGCAGAACCTTAGACCAACAAGTCCACAGCCTTCTCCTGCA 931
Query 880 ACCACATCGAGAATCTTACCCTTTATTTGCCCAAAACAACCTTCCAGAAGCAGCAG---A 936
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 932 ACCACATCGAGAATCTTACCCTTTATTTGCCCAAAACAACCTTCCAGAAGCAGCAGATCA 991
Query 937 TCCTTAGCAGCAAATTCCGGTATTGACAGAATTATGGCAGCAGCCTTGGAAAGTCGCAGC 996
||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 992 TCCTTAGCAGCAACTTCCGGTATTGACAGAATTATGGCAGCAGCCTTGGAAAGCCGCAGC 1051
Query 997 TACCAGCGGCCTCAGCAGAGATTTGCAAACCCAGGCACAGCAGCTCAGCCTTATGTTCGT 1056
|||||||||||||||||||||||| ||| | | || ||||||||||| |
Sbjct 1052 TACCAGCGGCCTCAGCAGAGATTT----------GCA-A--A--TCCGCCTTATGTTCCT 1096
Query 1057 ATGAGAC-ATTTAAGATCACCATGCCATGGGATGGCTCCACCTGTCACAATCAGAACCGC 1115
||||| | |||| ||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 1097 ATGAGGCAATTT-AGATCGCAATGCCATGGGATGGCTCCACCTGTCACAATCAGAACCGC 1155
Query 1116 TGTACCGGTCTTCTCTGCACCTCCAATGCCTCCTCCTCCATGTACAAACAACACTCAGCT 1175
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1156 TGTACCGGTCTTCTCTGCACCTCCAATGCCTCCTCCACCATGTACAAACAACACTCAGCT 1215
Query 1176 ACCTTCTTCTGTCTATGTGCCATCGCTGATGCGAACTGCACCACCTGTGAGAATCGCACC 1235
|||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1216 ACCTTCTTCTGTGTATGTCCCATCGCTGATGCGAACTGCACCACCTGTGAGGATCGCGCC 1275
Query 1236 ACCTGTCACAATCAGAACCGCGGTGCCCGTTTTTGCTTCTGCGCCACCGGTTAGAATTAG 1295
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1276 GCCTGTCACAATCAGAACCGCGGTGCCCGTATTTGCTTCTGCGCCACCGGTTAGAATT-- 1333
Query 1296 AAAAGTGGATATCCAAACTGCTGTGAAGCCCACAGTTGAGGTAGGAGAAACCCAG-GTAT 1354
| || | | | |||||||||||||||||||||| ||||||||||| | |||
Sbjct 1334 ---A---GA-A--C---C-GCTGTGAAGCCCACAGTTGAGGCAGGAGAAACCC-GCATAT 1379
Query 1355 CATTGGTCCAAGAAAAGGAGGAGAGTATTCCAGTCTTGCCTGATACTCTTGAAATTGGAG 1414
||| ||||||| ||| |||||||||| |||||||||||||||| ||||||||||||||
Sbjct 1380 CATCAGTCCAAG-AAA--AGGAGAGTATACCAGTCTTGCCTGATAGTCTTGAAATTGGAG 1436
Query 1415 AAGTAGGAATTACTATACCAATTTCAGA----GAG-----A--G----A-GAAAAC-AG- 1456
|| ||||| ||||||| ||||| |||| ||| | | | |||| | ||
Sbjct 1437 TAGAAGGAAGTACTATAACAATTACAGATTGTGAGAAAACAGCGTCAAAGGAAACCGAGA 1496
Query 1457 CTGC--A----AAGGACTCATCGAAAGGAGAAGCGGAGACAGCAAGAGAGCGACTGGAGT 1510
|| | ||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1497 GAGCAGAGTTTAAGGATTCATCGAAAGGAGAACCGGAGACAGCAAGAGAGCGACTGGAGA 1556
Query 1511 ACCTAAAAATCTGATGTCTTGAGGACCGTCTCTGAGTTTAG--TTTTTTGAGGTTGGTTT 1568
||||||| |||||||| ||||| ||| ||||||| |||||| |||||||||||||||||
Sbjct 1557 ACCTAAAGATCTGATGCCTTGAAGACTGTCTCTGGGTTTAGTTTTTTTTGAGGTTGGTTT 1616
Query 1569 CTGAAAATTGTTACATTAGTAA--TCGTCCGTTATTATACTCGGTGGATCGAGTAGTTTG 1626
|||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 1617 CTGAAAATTGTTACATTAGTAATCTCGTTCGTTATTATACTCGGTGGATCGAGTAGTTTG 1676
Query 1627 ATAATCCGAAAGATTTGTATTATATTGGG-AGTTTTAGGAGGAACCTGGCCATCTCTGGA 1685
||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||
Sbjct 1677 ATAATCCGAAAGATTTGTATTATATTGGGGAGTTTTGGGAAGAACCTGGCCATCTCTGGA 1736
Query 1686 TTGTAGAATTGTATCAGTTTCACTTTCTATTCTGTTTGTTTGTGTCCTTTTT---AT--- 1739
||||||||||||||||||||| ||| |||||| ||||||||||||||||||| ||
Sbjct 1737 TTGTAGAATTGTATCAGTTTCGCTTCCTATTCAGTTTGTTTGTGTCCTTTTTCTCATCTT 1796
Query 1740 --A-AA-TCCGTTACCTATCGTCGTTCCAGAAGAATCAAGCTC 1778
| || || |||||||||||| ||||||| ||||||||||||
Sbjct 1797 TTATAAATCTGTTACCTATCGTTGTTCCAGCAGAATCAAGCTC 1839
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87951354840
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5