BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg481672 Length=697 Score E Sequences producing significant alignments: (Bits) Value AT2G28330.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 510 6e-144 > AT2G28330.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G08035.1); Has 18 Blast hits to 18 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:12099890-12100757 REVERSE LENGTH=868 Length=868 Score = 510 bits (276), Expect = 6e-144 Identities = 410/468 (88%), Gaps = 35/468 (7%) Strand=Plus/Plus Query 100 ATGGAGCAAGAAGAACCATGTGAAGCAAAAGAAACAG---CTTCTTCGATAGAGCCCAAA 156 |||||||||||||||||||||||||| |||||||||| |||||||||||||||| ||| Sbjct 135 ATGGAGCAAGAAGAACCATGTGAAGCGAAAGAAACAGCTTCTTCTTCGATAGAGCCGAAA 194 Query 157 ACACCAAACCCTAATGTCCCAGATTCGATTCCGGCTATCGATTCTGATTCTTCTCTATCG 216 |||||||||||||||||||||||||||||||| || || ||||| ||||||||||| ||| Sbjct 195 ACACCAAACCCTAATGTCCCAGATTCGATTCCTGCCATTGATTCCGATTCTTCTCTTTCG 254 Query 217 GAAGAAGAAATAACCACAAAGAAAGACAGAGGAATCGTCACTTTGTCT-C-CT-T-T--- 269 |||||||||||| ||| ||||||||||||||||||||||||||||| | || | | Sbjct 255 GAAGAAGAAATAGTTACAGAGAAAGACAGAGGAATCGTCACTTTGTCTCCACTGTGTAAA 314 Query 270 --GTGTATTGATTCTGTTTCAG-TCTCAGATTGTGTTTTGGTATCTGATGAAGAAATTAT 326 | | |||||||||| ||| | |||| ||||||||||||||||||||||| |||||||| Sbjct 315 CAGAGGATTGATTCTGCTTC-GATCTCGGATTGTGTTTTGGTATCTGATGACGAAATTAT 373 Query 327 AGAGTCAATTTATCAGAATCTGTTGAGAGTTATTGTCTC--T---GC---TTC----T-T 373 |||||| |||||||||||||||||||||||||| |||| | || ||| | | Sbjct 374 AGAGTCTCTTTATCAGAATCTGTTGAGAGTTATTCTCTCATTGCAGCAGATTCAAAGTGT 433 Query 374 --C------TACTGAGATTTGGTGTTTTGATGGTTGTAAGACACCGCCTCCTTCGTCTCG 425 | | |||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 434 AGCTGTTGTTCCTGAGATTTGGTGTTTTGATGGTTGTAAAACACCGCCTCCTTCGTCTCG 493 Query 426 GAATCTCGATTCGAATATGGTTAATGATACTTGTCCTGGAGCTCCTATGAAGCTCACTAA 485 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 494 GAATCTCGATTCGAATATGGTTAGTGATACTTGTCCTGGAGCTCCTATGAAGCTCACTAA 553 Query 486 GATAGCTAGGAATATTGATTCTGGATTAAGAAGAAAACTCTTCTGAGT 533 |||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 554 GATATCTAGGAATATTGATTCTGGATTAAGAAGAAAACTCTTCTGAGT 601 Score = 211 bits (114), Expect = 7e-54 Identities = 155/173 (90%), Gaps = 9/173 (5%) Strand=Plus/Plus Query 534 TGTTGTAGT-AGCTATAAGAGCTTTAGAGG--TGAT-AACTCTTATGACTC-T-TGATTT 587 ||||||||| ||||||||||| ||||| || | | |||||||||| ||| | |||||| Sbjct 646 TGTTGTAGTAAGCTATAAGAGATTTAGGGGTTTTTTAAACTCTTATGGCTCTTGTGATTT 705 Query 588 GACTTTTGTTTGTACAGTTTTCTTAGGTTTTTTATGTGTAATTGCTAGCTAAAGCTAGTT 647 |||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||| Sbjct 706 GACTTTTGTTTGTACAGTCTTGTTAGGCTTTTTATGTGTAATTGCTAGCTAAAGCTAGTT 765 Query 648 GTTGT-G--GGAGACATTCAGTTTTTGTTCTTTCTTTCTTGTCTGTAATTTAT 697 ||||| | ||||||||||||||| |||||||||||||||||||||||||||| Sbjct 766 GTTGTTGTTGGAGACATTCAGTTTCTGTTCTTTCTTTCTTGTCTGTAATTTAT 818 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33757346784 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5