BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg481672

Length=697
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G28330.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   510    6e-144


> AT2G28330.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G08035.1); 
Has 18 Blast hits to 18 proteins in 6 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:12099890-12100757 
REVERSE LENGTH=868
Length=868

 Score =  510 bits (276),  Expect = 6e-144
 Identities = 410/468 (88%), Gaps = 35/468 (7%)
 Strand=Plus/Plus

Query  100  ATGGAGCAAGAAGAACCATGTGAAGCAAAAGAAACAG---CTTCTTCGATAGAGCCCAAA  156
            |||||||||||||||||||||||||| ||||||||||   |||||||||||||||| |||
Sbjct  135  ATGGAGCAAGAAGAACCATGTGAAGCGAAAGAAACAGCTTCTTCTTCGATAGAGCCGAAA  194

Query  157  ACACCAAACCCTAATGTCCCAGATTCGATTCCGGCTATCGATTCTGATTCTTCTCTATCG  216
            |||||||||||||||||||||||||||||||| || || ||||| ||||||||||| |||
Sbjct  195  ACACCAAACCCTAATGTCCCAGATTCGATTCCTGCCATTGATTCCGATTCTTCTCTTTCG  254

Query  217  GAAGAAGAAATAACCACAAAGAAAGACAGAGGAATCGTCACTTTGTCT-C-CT-T-T---  269
            ||||||||||||   ||| ||||||||||||||||||||||||||||| | || | |   
Sbjct  255  GAAGAAGAAATAGTTACAGAGAAAGACAGAGGAATCGTCACTTTGTCTCCACTGTGTAAA  314

Query  270  --GTGTATTGATTCTGTTTCAG-TCTCAGATTGTGTTTTGGTATCTGATGAAGAAATTAT  326
              | | |||||||||| ||| | |||| ||||||||||||||||||||||| ||||||||
Sbjct  315  CAGAGGATTGATTCTGCTTC-GATCTCGGATTGTGTTTTGGTATCTGATGACGAAATTAT  373

Query  327  AGAGTCAATTTATCAGAATCTGTTGAGAGTTATTGTCTC--T---GC---TTC----T-T  373
            ||||||  |||||||||||||||||||||||||| ||||  |   ||   |||    | |
Sbjct  374  AGAGTCTCTTTATCAGAATCTGTTGAGAGTTATTCTCTCATTGCAGCAGATTCAAAGTGT  433

Query  374  --C------TACTGAGATTTGGTGTTTTGATGGTTGTAAGACACCGCCTCCTTCGTCTCG  425
              |      | |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  434  AGCTGTTGTTCCTGAGATTTGGTGTTTTGATGGTTGTAAAACACCGCCTCCTTCGTCTCG  493

Query  426  GAATCTCGATTCGAATATGGTTAATGATACTTGTCCTGGAGCTCCTATGAAGCTCACTAA  485
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  494  GAATCTCGATTCGAATATGGTTAGTGATACTTGTCCTGGAGCTCCTATGAAGCTCACTAA  553

Query  486  GATAGCTAGGAATATTGATTCTGGATTAAGAAGAAAACTCTTCTGAGT  533
            |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  554  GATATCTAGGAATATTGATTCTGGATTAAGAAGAAAACTCTTCTGAGT  601


 Score =  211 bits (114),  Expect = 7e-54
 Identities = 155/173 (90%), Gaps = 9/173 (5%)
 Strand=Plus/Plus

Query  534  TGTTGTAGT-AGCTATAAGAGCTTTAGAGG--TGAT-AACTCTTATGACTC-T-TGATTT  587
            ||||||||| ||||||||||| ||||| ||  |  | |||||||||| ||| | ||||||
Sbjct  646  TGTTGTAGTAAGCTATAAGAGATTTAGGGGTTTTTTAAACTCTTATGGCTCTTGTGATTT  705

Query  588  GACTTTTGTTTGTACAGTTTTCTTAGGTTTTTTATGTGTAATTGCTAGCTAAAGCTAGTT  647
            |||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||
Sbjct  706  GACTTTTGTTTGTACAGTCTTGTTAGGCTTTTTATGTGTAATTGCTAGCTAAAGCTAGTT  765

Query  648  GTTGT-G--GGAGACATTCAGTTTTTGTTCTTTCTTTCTTGTCTGTAATTTAT  697
            ||||| |  ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  766  GTTGTTGTTGGAGACATTCAGTTTCTGTTCTTTCTTTCTTGTCTGTAATTTAT  818



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 33757346784


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5