BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481676
Length=1402
Score E
Sequences producing significant alignments: (Bits) Value
AT2G28310.1 | Symbols: | Protein of unknown function (DUF707) ... 1779 0.0
AT1G08040.1 | Symbols: | Protein of unknown function (DUF707) ... 1177 0.0
AT3G26440.1 | Symbols: | Protein of unknown function (DUF707) ... 281 1e-74
AT2G13580.1 | Symbols: | pseudogene, similar to OSJNBa0072K14.... 115 1e-24
> AT2G28310.1 | Symbols: | Protein of unknown function (DUF707)
| chr2:12085377-12088060 FORWARD LENGTH=1535
Length=1535
Score = 1779 bits (963), Expect = 0.0
Identities = 1097/1158 (95%), Gaps = 23/1158 (2%)
Strand=Plus/Plus
Query 180 AATGGGAACAATGCACCGCAGTGGTGCTCCTAGAAGAACGAATGAAAATGCAAAGGTTAT 239
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 238 AATGGGAACAATGCACCGCAGTGGTGCTCCTCGAAGAACGAATGAAAATGCAAAGGTTAT 297
Query 240 TATCACTACTATTTTGGGGATAGTGTTTGGGACTTTTATTGGTATCACATTACCTTCACT 299
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 TATTACTACTATTTTGGGGATAGTGTTTGGGACTTTTATTGGTATCACATTACCTTCACT 357
Query 300 TTCTTTTAAGATTAACTTACCCTCGCGCCTTATATCATCTCTTGATGTAGCTATATCAGA 359
||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 358 TTCGTTTAAGATTAACTTACCCTCGCGCCTTATATCATCTCTTGATGTAGC-----C--A 410
Query 360 TGGGAAATTGTTGTCTGGTGGTGACAAATCGCCTGAAGATTTCGGTTCAAGAAAATTTCC 419
| | || |||||||||||| ||||||||||||||||||||||| |||||
Sbjct 411 T-----A------TC---TGGTGACAAATCCCCTGAAGATTTCGGTTCAAGAAAGTTTCC 456
Query 420 TGAGATATATGTTCCAACTAACCCGCGTGGTGCAGAACTACTACCGCCAGGAATTGTTGT 479
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 457 TGAGATATATGTTCCAACTAACCCGCGTGGTGCAGAACTACTACCTCCAGGAATCGTTGT 516
Query 480 GGCAAAAACTGATTTTTATTTGCGTAGATTATGGGGAGAACCTAATGAAGATTTGAAGAA 539
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 517 GGCGAAAACTGATTTTTACTTGCGTAGATTATGGGGAGAACCTAATGAAGATTTGAAGAA 576
Query 540 GAAGCCGAAGTATCTTGTGACATTTACTGTTGGATTTGAGCAGAGGAACCATATTAATGG 599
|||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 577 GAAGCCAAAATATCTTGTGACATTTACAGTTGGATTTGAGCAGAGGAACCATATTAATGG 636
Query 600 AGTTGTTAAGAAGTTTTCTGAAGATTTCCAAATTTTGCTCTTCCATTATGATGGCCGGAC 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 637 AGTTGTTAAGAAGTTTTCTGAAGATTTCCAAATTTTGCTCTTCCATTATGATGGCCGGAC 696
Query 660 AACTGAGTGGGACCAATTTGAGTGGTCAAAGAGCGCGATTCATATTAGTACGAGAAAGCA 719
|||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 697 AACTGAATGGGACCAATTTGAGTGGTCGAAGAGCGCGATTCATATTAGTACAAGAAAGCA 756
Query 720 AACAAAATGGTGGTACGCGAAGAGGTTTTTACATCCTGATGTTGTGTCAGCTTACGAGTA 779
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 757 AACAAAATGGTGGTACGCGAAGAGGTTTTTGCATCCTGATGTTGTGTCAGCTTATGAGTA 816
Query 780 CATATTTATATGGGATGAAGATCTTGGAGTGGAGCATTTCAATGCGGATAAGTACATTGA 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 817 CATATTTATATGGGATGAAGATCTTGGAGTGGAGCATTTCAATGCGGATAAGTACATTGA 876
Query 840 GTTAGTTAAGAAGCATGGTTTAGAGATTTCTCAACCAGGCCTAGAGCCCAACAATGGACT 899
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 877 GTTAGTTAAGAAGCATGGTTTAGAGATTTCTCAACCAGGCTTAGAGCCTAACAATGGACT 936
Query 900 CACATGGGAAATGACAAAAAGGAGAGGTGACCGAGAGGTCCACAAAGATACGAAAGAAAA 959
|||||||||||||||||| |||||||||||||| || ||||| |||||||| ||||| ||
Sbjct 937 CACATGGGAAATGACAAAGAGGAGAGGTGACCGGGAAGTCCATAAAGATACAAAAGAGAA 996
Query 960 ACCAGGATGGTGTAAAGACCCACATTTACCTCCATGTGCCGCATTTGTTGAAATAATGGC 1019
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 997 ACCAGGATGGTGTAAAGACCCACATTTACCTCCATGTGCCGCGTTTGTTGAAATAATGGC 1056
Query 1020 GCCCGTATTTTCTCGAGAAGCATGGCGATGTGTGTGGCATATGATTCAGAACGATCTGGT 1079
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1057 GCCTGTATTTTCTCGAGAAGCATGGCGATGTGTGTGGCATATGATTCAGAATGATCTGGT 1116
Query 1080 TCATGGATGGGGTCTCGACTTTGCGCTTAGAAGATGCGTTGAACCTGCTCATGAGAAGAT 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1117 TCATGGATGGGGTCTCGACTTTGCGCTTAGAAGATGCGTTGAACCTGCTCATGAGAAGAT 1176
Query 1140 TGGTGTTGTGGATTCTCAATGGATAATACATAAAGTGATACCGTCACTTGGAAGTCAAGG 1199
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1177 TGGTGTTGTGGATTCGCAATGGATAATACATAAAGTGATACCTTCACTTGGAAGTCAAGG 1236
Query 1200 AAAGTCAGAGAATGGAAAAGCTCCATGGCAAGGAGTGAGAGAGAGATGCAAAATGGAATG 1259
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1237 AAAGTCAGAGAATGGGAAAGCTCCATGGCAAGGAGTGAGAGATAGATGCAAAATGGAATG 1296
Query 1260 GACAATGTTTCAGAACCGATTGGCAGATGCAGATAAAGAGTACCTTGGGAGGATGGTTAA 1319
|||||||||||||||||||||||| ||||| ||||||||||| ||||||| |||||| ||
Sbjct 1297 GACAATGTTTCAGAACCGATTGGCTGATGCTGATAAAGAGTATCTTGGGAAGATGGTGAA 1356
Query 1320 AGGAT-AGAttttttttt 1336
|| || |||||| |||||
Sbjct 1357 AG-ATTAGATTTGTTTTT 1373
Score = 130 bits (70), Expect = 4e-29
Identities = 76/79 (96%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 24 tctctctgtcacactctttctcactctctgctctcGCAGATCGGAGAATCTCCTCTGAGA 83
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 36 TCTCTCTGTCACACTCTTTATCACTCTCTGCTCTCACAGATCGGAGAATCTCCTCTGAGA 95
Query 84 GCTCTAATCTCTCACCttt 102
|||||||||||||| ||||
Sbjct 96 GCTCTAATCTCTCAGCTTT 114
> AT1G08040.1 | Symbols: | Protein of unknown function (DUF707)
| chr1:2495342-2498764 REVERSE LENGTH=1620
Length=1620
Score = 1177 bits (637), Expect = 0.0
Identities = 966/1126 (86%), Gaps = 18/1126 (2%)
Strand=Plus/Plus
Query 181 ATGGGAACAATGCACCGCAGTGGTGCTCCTAGAAGAACGAATGAAAATGCAAAGGTTATT 240
||||| || |||||||| ||||||||||| ||||| || ||||||||||| ||| ||||
Sbjct 307 ATGGGGACGATGCACCGGAGTGGTGCTCCCAGAAGGACAAATGAAAATGCGAAGCTTATC 366
Query 241 ATCACTACTATTTTGGGGA-TAGTGTTTGGGACTTTTATTGGTATCACATTACC-TTCA- 297
|| || || || | |||| | |||||||| |||| |||||||||||||||| || |
Sbjct 367 ATAACGACAATCGT-GGGAGTGGTGTTTGGTTTTTTTGTTGGTATCACATTACCATT-AG 424
Query 298 CTTTCTTT--TAAGATTAACTTACCCTC-GCGCCTTATATCATCTCTTGATGTAGCTATA 354
|| |||| ||||||| |||||| || | ||||||| ||||||||||||||||| ||
Sbjct 425 GTTCCTTTAGAAAGATTAGCTTACCTTCAG-GCCTTATGTCATCTCTTGATGTAGCCATG 483
Query 355 TCAGATGGGAAATTGTTGTCTGGTGGTGACAAATCGCCTGAAGAT-TTCGGTTCAAGAAA 413
||||||||||||||||| |||||| | | || ||| ||||||||| || |||||||||||
Sbjct 484 TCAGATGGGAAATTGTTTTCTGGT-G-G-CAGATCACCTGAAGATATT-GGTTCAAGAAA 539
Query 414 ATTTCCTGAGATATATGTTCCAACTAACCCGCGTGGTGCAGAACTACTACCGCCAGGAAT 473
| |||| |||||||||||||||| || |||| ||||||||||||||| || || || ||
Sbjct 540 GTCTCCTAAGATATATGTTCCAACCAATCCGCATGGTGCAGAACTACTTCCTCCTGGGAT 599
Query 474 TGTTGTGGCAAAAACTGATTTTTATTTGCGTAGATTATGGGGAGAACCTAATGAAGATTT 533
| | |||||| |||| ||||| || ||||| |||||||||| ||||||| |||||||||
Sbjct 600 TATAGTGGCAGAAACAGATTTCTACTTGCGCCGATTATGGGGTGAACCTAGTGAAGATTT 659
Query 534 GAAGAAGAAGCCGAAGTATCTTGTGACATTTACTGTTGGATTTGAGCAGAGGAACCATAT 593
|||||||||||| |||||||| || || ||||| ||||||||||||||||| ||| | ||
Sbjct 660 GAAGAAGAAGCCAAAGTATCTCGTAACTTTTACAGTTGGATTTGAGCAGAGAAACAACAT 719
Query 594 TAATGGAGTTGTTAAGAAGTTTTCTGAAGATTTCCAAATTTTGCTCTTCCATTATGATGG 653
||||| || |||||||||||||||||||||||||||||| ||| | ||||||||||||||
Sbjct 720 TAATGCAGCTGTTAAGAAGTTTTCTGAAGATTTCCAAATATTGTTATTCCATTATGATGG 779
Query 654 CCGGACAACTGAGTGGGACCAATTTGAGTGGTC-AAAGAGCGCGATTCATATTAGTACGA 712
||| ||||||||||||||||| ||||||||||| ||| | || || ||||| ||| | |
Sbjct 780 CCGAACAACTGAGTGGGACCAGTTTGAGTGGTCTAAAAAT-GCAATACATATCAGTGCAA 838
Query 713 GAAAGCAAACAAAATGGTGGTACGCGAAGAGGTTTTTACATCCTGATGTTGTGTCAGCTT 772
||||||||||||||||||||| || ||||| ||||| |||||||||||||| |||||||
Sbjct 839 AAAAGCAAACAAAATGGTGGTATGCAAAGAGATTTTTGCATCCTGATGTTGTCTCAGCTT 898
Query 773 ACGAGTACATATTTATATGGGATGAAGATCTTGGAGTGGAGCATTTCAATGCGGATAAGT 832
| ||||| ||||||||||||||||||||||||||||| ||||| |||||||| |||| ||
Sbjct 899 ATGAGTATATATTTATATGGGATGAAGATCTTGGAGTCGAGCACTTCAATGCAGATAGGT 958
Query 833 ACATTGAGTTAGTTAAGAAGCATGGTTTAGAGATTTCTCAACCAGGCCTAGAGCCCAACA 892
|| ||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||
Sbjct 959 ACGTTGAGTTAGTTAAGAAGCATGGTTTGGAGATTTCTCAACCAGGCTTAGAGCCAAACA 1018
Query 893 ATGGACTCACATGGGAAATGACAAAAAGGAGAGGTGACCGAGAGGTCCACAAAGATACGA 952
| ||||| ||||||||||||||||| ||||||||||||||||| ||||||||||| || |
Sbjct 1019 ACGGACTTACATGGGAAATGACAAAGAGGAGAGGTGACCGAGATGTCCACAAAGAAACTA 1078
Query 953 AAGAAAAACCAGGATGGTGTAAAGACCCACATTTACCTCCATGTGCCGCATTTGTTGAAA 1012
| ||||||||||||||||| | || |||||||||||||||||||| || |||||||| |
Sbjct 1079 AGGAAAAACCAGGATGGTGCAGTGATCCACATTTACCTCCATGTGCTGCGTTTGTTGAGA 1138
Query 1013 TAATGGCGCCCGTATTTTCTCGAGAAGCATGGCGATGTGTGTGGCATATGATTCAGAACG 1072
| ||||| || ||||||||| ||||||||||||||||||| ||||||||||||||||| |
Sbjct 1139 TTATGGCACCTGTATTTTCTAGAGAAGCATGGCGATGTGTATGGCATATGATTCAGAATG 1198
Query 1073 ATCTGGTTCATGGATGGGGTCTCGACTTTGCGCTTAGAAGATGCGTTGAACCTGCTCATG 1132
|||| |||||||||||||||||||| ||||| || ||| |||||||||| ||||||||||
Sbjct 1199 ATCTTGTTCATGGATGGGGTCTCGATTTTGCTCTCAGACGATGCGTTGAGCCTGCTCATG 1258
Query 1133 AGAAGATTGGTGTTGTGGATTCTCAATGGATAATACATAAAGTGATACCGTCACTTGGAA 1192
||||||||||||| || ||||| || ||||| || ||| ||||||| || || |||||||
Sbjct 1259 AGAAGATTGGTGTGGTAGATTCACAGTGGATTATCCATCAAGTGATTCCTTCCCTTGGAA 1318
Query 1193 GTCAAGGAAAGTCAGAGAATGGAAAAGCTCCATGGCAAGGAGTGAGAGAGAGATGCA-AA 1251
|||| || |||| ||| | || ||| ||||||||||||| ||||| |||||||||| ||
Sbjct 1319 GTCAGGGTGAGTCGGAGGAGGGGAAATCTCCATGGCAAGGGGTGAGGGAGAGATGCAGAA 1378
Query 1252 ATGGAATGGACAATGTTTCAGAACCGATTGGCAGATGCAGATAAAG 1297
| | ||||||| ||||| ||||| || ||||||| || |||||||
Sbjct 1379 ACG-AATGGACGATGTTCCAGAATCGCGTGGCAGAAGCTGATAAAG 1423
> AT3G26440.1 | Symbols: | Protein of unknown function (DUF707)
| chr3:9676982-9679900 FORWARD LENGTH=1532
Length=1532
Score = 281 bits (152), Expect = 1e-74
Identities = 441/577 (76%), Gaps = 34/577 (6%)
Strand=Plus/Plus
Query 715 AAGCAAACAAAATGGTGGTACGCGAAGAGGTTTTTACATCCTGATGTTGT-GTCAGCTTA 773
|||||||| || |||||||| || || |||||| | ||||||||| | | | || | ||
Sbjct 681 AAGCAAACCAAGTGGTGGTATGCTAAAAGGTTTCTGCATCCTGATATCATAG-CACCATA 739
Query 774 CGAGTACATATTTATATGGGATGAAGATCTTGGAGTGGAGCATTTCAATGCGGATA-AGT 832
|| || ||||| || ||||||||||||||||| || || | ||| | || || | |||
Sbjct 740 TGAATATATATTCATTTGGGATGAAGATCTTGGCGTTGAAAACTTCGACGCAGA-AGAGT 798
Query 833 ACATTGAG-TTAGTTAAGAAGCATGGTTTAGAGATTTCTCAACCAGGC-CTAGAGCCCA- 889
|||| || || || || ||||||||| |||| || || ||||| || | || | |
Sbjct 799 ACATCAAGATT-GTGAATAAGCATGGTCTAGAAATATCGCAACC-CGCTGTGGAATCAAG 856
Query 890 ACAATGGACTCACATGGGAA-ATGACAAAAAGGAGA---GGTGACCGAGAGGTCCACAAA 945
| ||| | |||||| |||| || ||||| || | | || | ||| | || ||||||
Sbjct 857 AAAAT-CAATCACAT-GGAAGATAACAAAGAGAATACCCGG-AATCGA-A-GTTCACAAA 911
Query 946 G-A-TACGAAAGAAAAACCAGGATGGTGTAAAGACCCACATTTACCTCCATGTGCCGCAT 1003
| | | || |||| |||||||| | || || ||||| || ||||||| ||||| | |
Sbjct 912 GAAGT-CG-AAGAGAAACCAGGCCGCTGCAATGACCCTCACCTACCTCCTTGTGCAGGGT 969
Query 1004 TTGTTGAAATAATGGCGCCCGTATTT-TCTCGAGAAGCATGGCGATGTGTGTGGCATATG 1062
|| | || || ||||| || || ||| ||| |||| |||||||| |||||||||||||||
Sbjct 970 TTATAGAGATTATGGCTCCAGT-TTTCTCTAGAGAGGCATGGCGTTGTGTGTGGCATATG 1028
Query 1063 ATTCAGAACGATC-TGGTTCATGGATGGGGTCTCGACTTTGCGCTTAGAAGATGCGTTGA 1121
|||||||| || | ||||||| || |||||||| ||||||||||| |||| |||||| ||
Sbjct 1029 ATTCAGAATGA-CTTGGTTCACGGTTGGGGTCTTGACTTTGCGCTAAGAAAATGCGTCGA 1087
Query 1122 ACCTGCTCATGAGAAGATTGGTGTTGTGGATTCTCAATGGATAATACAT-AAAGTGATAC 1180
||||| ||||||||||||||||||||||||||||||||||| || ||| ||| ||| |
Sbjct 1088 GCCTGCACATGAGAAGATTGGTGTTGTGGATTCTCAATGGATCATTCATCAAAA-GATTC 1146
Query 1181 CGTCACTT-GGAAGTCAAGGAAA-GT-CAGAGAATGGAAAAGCTCCATGGCAAGGAGTGA 1237
| || || || || || |||| | ||| ||| |||||| | | | ||||| || |
Sbjct 1147 CTTCT-TTAGGCAGCCAGGGAACCGCGCAG-GAAGGGAAAACCGCGTTC-CAAGGGGTAA 1203
Query 1238 GAGAGAGATGCAAAATGGAATGGACAATGTTTCAGAA 1274
|||||||||| ||| |||||||||||||||||||||
Sbjct 1204 GAGAGAGATGTAAACGGGAATGGACAATGTTTCAGAA 1240
> AT2G13580.1 | Symbols: | pseudogene, similar to OSJNBa0072K14.8,
blastp match of 34% identity and 3.7e-06 P-value to GP|21740743|emb|CAD40552.1||AL606621
OSJNBa0072K14.8 {Oryza sativa
(japonica cultivar-group)} | chr2:5658456-5659763 FORWARD
LENGTH=1308
Length=1308
Score = 115 bits (62), Expect = 1e-24
Identities = 70/74 (95%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 24 tctctctgtcacactctttctcactctctgctctcGCAGATCGGAGAATCTCCTCTGAGA 83
||||||| ||||||||||| |||||||||||| ||| |||||||||||||||||||||||
Sbjct 1039 TCTCTCTATCACACTCTTTATCACTCTCTGCTATCGTAGATCGGAGAATCTCCTCTGAGA 1098
Query 84 GCTCTAATCTCTCA 97
||||||||||||||
Sbjct 1099 GCTCTAATCTCTCA 1112
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69075949920
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5