BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481677
Length=1051
Score E
Sequences producing significant alignments: (Bits) Value
AT2G28305.1 | Symbols: LOG1, ATLOG1 | Putative lysine decarboxy... 1602 0.0
AT2G37210.2 | Symbols: | lysine decarboxylase family protein |... 257 1e-67
> AT2G28305.1 | Symbols: LOG1, ATLOG1 | Putative lysine decarboxylase
family protein | chr2:12081113-12084664 FORWARD LENGTH=1072
Length=1072
Score = 1602 bits (867), Expect = 0.0
Identities = 964/1007 (96%), Gaps = 21/1007 (2%)
Strand=Plus/Plus
Query 1 CACAACGAGAAAAATAGATTCATCTTTCAATCttttttt-tCCTAAAAACAAAACTTTGT 59
|||||||||||| |||||||||||||||||||||||||| | || |||||||||||||||
Sbjct 3 CACAACGAGAAAGATAGATTCATCTTTCAATCTTTTTTTAT-CTTAAAACAAAACTTTGT 61
Query 60 GTGAAGAGAGAGATGGAGATAGAACCAAAATTCAAGAGAATATGTGTGTTTTGTGGAAGT 119
||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 62 GTGAAGAGAAAGATGGAGATAGAATCAAAGTTCAAGAGAATATGTGTGTTTTGTGGAAGT 121
Query 120 AGTGCTGGTAATAAA-TCCAGTTACAAAGATGCTGCTATCGAGCTCGGAACTGAACTGGT 178
||||||||||||||| | |||||||||||||||||||||||| |||||||| ||||||||
Sbjct 122 AGTGCTGGTAATAAAGT-CAGTTACAAAGATGCTGCTATCGAACTCGGAACCGAACTGGT 180
Query 179 ATCGAGAAATATCGATCTTGTCTATGGTGGAGGGAGCATTGGTTTAATGGGTTTGATTTC 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATCGAGAAATATCGATCTTGTCTATGGTGGAGGGAGCATTGGTTTAATGGGTTTGATTTC 240
Query 239 TCAAGCTGTTTTCAATGGAGGTCGCCATGTCATTGGGGTTATCCCCAAGACACTAATGCC 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TCAAGCTGTTTTCAATGGAGGTCGCCATGTCATTGGGGTTATCCCCAAGACACTAATGCC 300
Query 299 AAGAGAGATAACAGGAGAGACAGTGGGAGAAGTGAAGGCAGTAGCAGACATGCACCAAAG 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AAGAGAGATAACAGGAGAGACAGTGGGAGAAGTGAAGGCAGTAGCAGACATGCACCAAAG 360
Query 359 GAAAGCTGAGATGGCTAAGCACTCTGATGCTTTTATCGCTTTACCTGGTGGGTATGGGAC 418
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GAAAGCTGAAATGGCTAAGCACTCTGATGCTTTTATCGCTTTACCTGGTGGGTATGGGAC 420
Query 419 ACTTGAAGAGCTTCTTGAAGTTATCACTTGGGCACAGCTAGGCATCCATGATAAACCAGT 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ACTTGAAGAGCTTCTTGAAGTTATCACTTGGGCACAGCTAGGCATCCATGATAAACCAGT 480
Query 479 GGGATTGTTGAATGTGGAAGGATACTACAATTCATTGTTATCATTCATAGACAAAGCAGT 538
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GGGACTGTTGAATGTGGAAGGATACTACAATTCATTGTTATCATTCATAGACAAAGCAGT 540
Query 539 GGAAGAAGGTTTCATATCACCAACTGCTCGTCATATCATTGTCTCTGCTCCTTCTGCTAA 598
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 541 GGAAGAAGGTTTCATTTCACCAACTGCTCGTCATATCATTGTATCTGCTCCTTCTGCTAA 600
Query 599 AGAACTTGTCAAGAAACTTGAGGATTATGTACCAAGGCATGAGAAGGTAGCCTCAAAGAA 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AGAACTTGTCAAGAAACTTGAGGATTATGTACCAAGGCATGAGAAGGTAGCCTCAAAGAA 660
Query 659 AAGCTGGGAGATGGAGCAAATAGGGCTAAGTCCCACTTGTGAAATTTCAAGATGAAAAAG 718
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 661 AAGCTGGGAGATGGAGCAAATAGGGCTAAGTCCCACTTGTGAAATCTCAAGATGAAAAAG 720
Query 719 GACTAATTAAATTTCTTTAATTAGGACAACCCAATTGAATGTTTCTCTCCAAAATTGGGA 778
|||||||||| |||| ||||||||||||||||||||||||| | ||||||||| ||||||
Sbjct 721 GACTAATTAA-TTTCCTTAATTAGGACAACCCAATTGAATGAT-CTCTCCAAA-TTGGGA 777
Query 779 TCCTCTTTATTGATTGTAAAACGTAGTCCAAGCAAACCGG--AAAA--CAGATTGACTTT 834
||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||
Sbjct 778 CCCTCTTTATTGATTGTAAAACTTAGTCCAAGCAAACCGGGGAAAAAACAGATTGACTTT 837
Query 835 CTTCTTTTTGTGTAGTTGATTCTGTTGTTTAATGTAttttttttAGATTTTTAT-CTGGG 893
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 838 CTTCTTTTTGTGTAGTTGATTCTGTTGTTTAATGTATTTTTTTTAGATTTTTATTC-GGG 896
Query 894 AAAAA----GAAAAGACAGAAAATATGTTGGTTTTGTTTAGTTTGTATTTTTGTAATATG 949
||||| |||||||||||||||||||||||||| ||||||||| ||||| ||||||||
Sbjct 897 AAAAAAAAAGAAAAGACAGAAAATATGTTGGTTTT-TTTAGTTTGGATTTT-GTAATATG 954
Query 950 TCCCCTAACGAACAACTCAATCTTAGGGGGtttttctttctttcttt 996
||||| ||| ||||||||||| ||| | |||||||||||||||||
Sbjct 955 TCCCCCAACAAACAACTCAATTTTATAG--TTTTTCTTTCTTTCTTT 999
> AT2G37210.2 | Symbols: | lysine decarboxylase family protein
| chr2:15623991-15626938 REVERSE LENGTH=1086
Length=1086
Score = 257 bits (139), Expect = 1e-67
Identities = 266/326 (82%), Gaps = 14/326 (4%)
Strand=Plus/Plus
Query 85 CAAAATTCAAG-AGAATATGTGTGTTTTGTGGAAGTAGTGC-TGGTAATAA-ATCCAGTT 141
|||| ||| || ||||| ||||| || |||||||| || | || || || | |||||
Sbjct 136 CAAAGTTC-AGAAGAATCTGTGTCTTCTGTGGAAGCAG-CCAAGGCAAGAAGA-GCAGTT 192
Query 142 ACAAAGATGCTGCTATCGAGCTCGG-AACTGAACTGGTATCGAGAAATATCGATCTTGTC 200
|| ||||||||||| | || ||||| ||| |||||||| || || ||||| ||||| |||
Sbjct 193 ACCAAGATGCTGCTGTTGACCTCGGCAAC-GAACTGGTTTCAAGGAATATTGATCTAGTC 251
Query 201 TATGGTGGAGGGAGCATTGGTTTAATGGGTTTGATTTCTCAAGCTGTTTTCA--ATGGAG 258
||||| || |||||||| || || ||||||||| |||| ||||||| |||| |||| |
Sbjct 252 TATGGAGGTGGGAGCATAGGATTGATGGGTTTGGTTTCACAAGCTG--TTCATGATGGTG 309
Query 259 GTCGCCATGTCATTGGGGTTATCCCCAAGACACTAATGCCAAGAGAGATAACAGGAGAGA 318
|||| ||||| ||||| | || |||||||| || ||||| |||||| | || || || |
Sbjct 310 GTCGTCATGTTATTGGAATCATTCCCAAGACCCTCATGCCTAGAGAGTTGACTGGTGAAA 369
Query 319 CAGTGGGAGAAGTGAAG-GCAGTAGCAGACATGCACCAAAGGAAAGCTGAGATGGCTAAG 377
|||| |||||||| ||| ||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 370 CAGTAGGAGAAGT-AAGAGCAGTTGCAGATATGCACCAAAGGAAAGCTGAGATGGCTAAG 428
Query 378 CACTCTGATGCTTTTATCGCTTTACC 403
||||||||||||||||| || |||||
Sbjct 429 CACTCTGATGCTTTTATTGCCTTACC 454
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51540234822
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5