BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481685
Length=1953
Score E
Sequences producing significant alignments: (Bits) Value
AT2G28250.1 | Symbols: NCRK | Protein kinase superfamily protei... 2896 0.0
> AT2G28250.1 | Symbols: NCRK | Protein kinase superfamily protein
| chr2:12043834-12046537 FORWARD LENGTH=2066
Length=2066
Score = 2896 bits (1568), Expect = 0.0
Identities = 1825/1946 (94%), Gaps = 29/1946 (1%)
Strand=Plus/Plus
Query 29 GGTTTTAGATTGTTGCACACTTGGAGGTTGAGATTAGTTTGACATGAAGGTCTTTTTCTA 88
||||||||||| |||||| ||||||||||||| |||||| ||||||||||||||| ||||
Sbjct 94 GGTTTTAGATTCTTGCACTCTTGGAGGTTGAGCTTAGTTCGACATGAAGGTCTTTATCTA 153
Query 89 ATCTCCAGCAAACAT--AAACGAAAATGAGAGTGGAAACCGCACTTGCGATTCTCTTGGT 146
||||||| | | | || ||| |||||||||||||||||||||||||| || |||||
Sbjct 154 ATCTCCA-CTCGC-TGGCAATGAAGATGAGAGTGGAAACCGCACTTGCGATCCTTTTGGT 211
Query 147 TCTCATATCAATTCAACAATGTTATGGAGGTGTAAGCAACTATACGTGTACGTGTTTCTC 206
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 212 TCTCATATCAATTCAACAATGTTATGGAGGTGTAAGCAACTATACATGTACGTGTTTCTC 271
Query 207 TTCGGGCAATCGAAGTGATATCCTGGAATCTAACTGTTCGACATCATGTAATTGCAGACC 266
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 272 TTCGGGCAATCGAAGTGATATCCTGGAATCTAACTGTTCCACATCATGTAATTGCAGA-C 330
Query 267 AGCAGAAAGAGACCAATGGGTATGTTTGTGTCCTGCAAATGGATTTCCAGTAATAGCCAT 326
|||| ||||| ||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 331 --CAGACAGAGATCAATGGGTATGTTTGTGTCCTGCAAATGGATTTCCGGTTATAGCCAT 388
Query 327 TGGCGGTTCCAATTCTTCATGCTTCACTTCCTGCAACTGCTCTGCTGGAGCTTCAAAATC 386
||| ||||| ||||| |||||||||||||| ||||||||||||||||| ||| |||||||
Sbjct 389 TGGTGGTTCAAATTCGTCATGCTTCACTTCATGCAACTGCTCTGCTGGTGCTACAAAATC 448
Query 387 TTCAAAGAGGCAATATTTATCGAGGAAACTCGTTATAGTTATAGTCCTCTTCTGTGGTGT 446
|||||||| |||||||||||||||||||||||||||||||||| | |||||||| |||||
Sbjct 449 TTCAAAGAAGCAATATTTATCGAGGAAACTCGTTATAGTTATACTACTCTTCTGCGGTGT 508
Query 447 ACTCACTTCACTAGCATTCCTTGCCTCTATGATTTGCTACATTTGTAGAAAGAACAAATT 506
||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||| ||
Sbjct 509 ACTCATTTCACTAGCATTCCTTGCCTCTATGATTTGTTACATTTGTAGAAAGGACAAGTT 568
Query 507 TTCTGGAGAAAGCCCTTCAGTTTCTTCAGATAGAGAATCAAGTTGGCATAGCTCTGCCAA 566
||||||| ||| ||||||||| ||||||||||||||||| || |||||||||||||| ||
Sbjct 569 TTCTGGACAAACCCCTTCAGTCTCTTCAGATAGAGAATCTAGCTGGCATAGCTCTGCTAA 628
Query 567 CTTAATAAACCGTAAAAGCTCGGTTTCACAATCGAAAATTAGCATCAGCTCCTCAGTGTC 626
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 629 CTTAATAAACCGTAAAAGCTCGGTTTCACAATCGAAAATTAGCATCAGCTCCTCAGTGGC 688
Query 627 AGGTTGCTTCTTTCAGAATGTTTCTTTGTTTTGTGTGAGCAGACCTGAAACAATCCATGG 686
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 689 AGGTTGCTTCTTTCAGAATGCTTCTTTGTTTTGTGTGAGCAAACCTGAAACAATCCATGG 748
Query 687 ATCGAT-TGTTCAGTTCTCATATACAGAATTAGAGCAAGCAACCAATAAATTCTCCAGTA 745
| | || | ||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 749 AGCTATCT-TTCAGTTCTCATACACAGAATTAGAGCAAGCAACCAATAAATTCTCAAGTA 807
Query 746 ACAGTGTAATAGGACATGGAGGAAGTAGCTGTGTTTACCGTGGACAGCTCAAAGACGGTA 805
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 808 ACAGTGTAATAGGACATGGAGGAAGTAGTTGTGTTTACCGTGGACAGCTCAAAGACGGTA 867
Query 806 AAACCGCTGCGATCAAACGTCTAAATACCCCTAAAGGAAATGACACTGACACTCTATTCT 865
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 868 AAACCGCTGCGATCAAACGTCTAAATACCCCTAAAGGAGACGACACTGACACTCTATTCT 927
Query 866 CAACAGAGGTAGAGTTATTATCAAGACTCCATCATTACCATGTGGTTCCGTTAATTGGAT 925
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 928 CAACAGAGGTAGAGTTATTATCAAGACTCCATCATTACCATGTGGTACCGTTAATTGGAT 987
Query 926 ATTGTTCGGAGTTTCATGGCAAACATGCAGAGAGGCTTCTGGTTTTTGAGTACATGTCTT 985
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 988 ATTGTTCGGAGTTTCATGGCAAACATGCAGAGAGGCTTCTGGTTTTTGAGTACATGTCTT 1047
Query 986 ATGGAAGTCTGAGAGATTGCTTAGATGGAGAGTTGGGGGAGAAAATGACATGGAACATTC 1045
|||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1048 ATGGAAGTCTAAGAGATTGCTTAGATGGAGAGTTAGGGGAGAAAATGACATGGAACATCC 1107
Query 1046 GAATATCTGTTGCTCTTGGAGCTGCAAGAGGTCTCGAGTATCTTCACGAAGCTGCTGCTC 1105
|||| ||||| |||||||||||||||||||| || ||||||||||| |||||||| ||||
Sbjct 1108 GAATCTCTGTCGCTCTTGGAGCTGCAAGAGGACTTGAGTATCTTCATGAAGCTGCCGCTC 1167
Query 1106 CAAGAATCTTACACCGAGATGTAAAATCCACTAATATTCTCCTTGATGAGAATTGGCATG 1165
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1168 CAAGAATCTTACACCGAGATGTGAAATCCACAAATATTCTCCTTGATGAGAATTGGCATG 1227
Query 1166 CAAAAATAACCGATCTTGGGATGGCTAAGTGTTTGAGTAGCGACGGTTTACAAAGCGGTT 1225
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1228 CAAAAATAACAGATCTTGGGATGGCTAAGTGTTTGAGTAGCGATGGTTTACAAAGCGGTT 1287
Query 1226 CAAGCTCTCCCACCAAAGGACTACAAGGAACATTTGGCTACTTTGCACCTGAATACGCAA 1285
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1288 CAAGCTCTCCAACCACAGGACTACAAGGAACATTTGGCTACTTTGCACCTGAATACGCAA 1347
Query 1286 TTGCAGGATGTGCTTCACAGATGTCAGACGTTTTCAGCTTCGGTGTTGTTCTACTCGAGC 1345
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1348 TTGCAGGATGTGCTTCACAGATGTCAGATGTTTTCAGCTTTGGTGTTGTTCTACTCGAGC 1407
Query 1346 TTATAACCGGAAGAAAACCGATACAAAAACCAAGCAACAACAAAGGCGAAGAAAGCCTCG 1405
||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1408 TTATAACCGGAAGGAAACCGATACAGAAACCAAGCAACAACAAAGGCGAAGAAAGCCTAG 1467
Query 1406 TTATTTGGGCTGTGCCGCGTTTACAAGATAGTAAGCGGGTGATCGACGAACTGCCTGATC 1465
|||| ||||||||||| || |||||||||||||||||||||||||| |||||||||||||
Sbjct 1468 TTATATGGGCTGTGCCACGGTTACAAGATAGTAAGCGGGTGATCGAGGAACTGCCTGATC 1527
Query 1466 CGCGGCTAAACGGGAAGTTTGCTGAAGAAGAGATGCAGATAATGGCGTATCTTGCTAAAG 1525
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1528 CGCGGCTAAACGGGAAGTTTGCGGAAGAAGAGATGCAGATAATGGCGTATCTTGCTAAAG 1587
Query 1526 AGTGTTTGCTTTTGGATCCAG-AAGCTAGACCAACTATGAGAGAAGTTGTTCAGATTCTT 1584
||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||
Sbjct 1588 AGTGTTTGCTTTTGGATCCAGAAAG-TAGACCAACAATGAGAGAAGTTGTTCAGATTCTT 1646
Query 1585 TCAACCATCACACCAGACGCATCATCCAGACGTAGAAATTTCCCCATTAATTATCTTTTC 1644
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1647 TCAACCATCACACCAGACACATCATCCAGACGTAGAAATTTCCCCATTAATTATCTTTTC 1706
Query 1645 CAGAGCAACGAGAAGAAGAAAGAAAGCAAAGTGGGATGGTCAAGAGGTGGGAGCAAGAGT 1704
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1707 CAGAGTAACGAGAAGAAGAAAGAAAGCAAAGTGGGATGGTCAAGAGGAGGGAGCAAGAGT 1766
Query 1705 GGACATGAGGATGAAACAGTGGACT-TGACTGAGCCACGGTTCGAGTCCTTCTGCTTGCC 1763
||||| || || ||||||||||| | |||||||||||||||||||||| |||||||||||
Sbjct 1767 GGACAGGAAGAGGAAACAGTGGA-TCTGACTGAGCCACGGTTCGAGTCATTCTGCTTGCC 1825
Query 1764 GAATGTGAAGCCGGTCTTGCTTGAACCATCTGCACATATTTAAAAAGTAGATAGAAAAGC 1823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1826 GAATGTGAAGCCGGTCTTGCTTGAACCATCTGCACATATTTAAAAAGTAGATAGAAAAGC 1885
Query 1824 ACAGAACAAAAACAGCCATCTCTCACTGTGTAGATAAAAAG-T------GA--AG--TG- 1871
||||||||||||| ||||| || |||||||||||||||||| | || || ||
Sbjct 1886 ACAGAACAAAAACTGCCATTTCGCACTGTGTAGATAAAAAGCTCACTCTGACGAGAGTGA 1945
Query 1872 ----TTGAGACTTGAGAGTTTTCTATAAGTGAGAGTGTCAAGATTTGTTCTGAACTAGAG 1927
||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||
Sbjct 1946 AGCGTTGAGACTTGAGAGTTTACTACAAGTGAGAGTGTCAAGATTTGTTCTAAACTAGAG 2005
Query 1928 AACTTTTAATTTATAATCTTAATAAA 1953
|||||||||| ||||| ||||||||
Sbjct 2006 GACTTTTAATTGATAATTTTAATAAA 2031
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96736450215
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5