BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg481685 Length=1953 Score E Sequences producing significant alignments: (Bits) Value AT2G28250.1 | Symbols: NCRK | Protein kinase superfamily protei... 2896 0.0 > AT2G28250.1 | Symbols: NCRK | Protein kinase superfamily protein | chr2:12043834-12046537 FORWARD LENGTH=2066 Length=2066 Score = 2896 bits (1568), Expect = 0.0 Identities = 1825/1946 (94%), Gaps = 29/1946 (1%) Strand=Plus/Plus Query 29 GGTTTTAGATTGTTGCACACTTGGAGGTTGAGATTAGTTTGACATGAAGGTCTTTTTCTA 88 ||||||||||| |||||| ||||||||||||| |||||| ||||||||||||||| |||| Sbjct 94 GGTTTTAGATTCTTGCACTCTTGGAGGTTGAGCTTAGTTCGACATGAAGGTCTTTATCTA 153 Query 89 ATCTCCAGCAAACAT--AAACGAAAATGAGAGTGGAAACCGCACTTGCGATTCTCTTGGT 146 ||||||| | | | || ||| |||||||||||||||||||||||||| || ||||| Sbjct 154 ATCTCCA-CTCGC-TGGCAATGAAGATGAGAGTGGAAACCGCACTTGCGATCCTTTTGGT 211 Query 147 TCTCATATCAATTCAACAATGTTATGGAGGTGTAAGCAACTATACGTGTACGTGTTTCTC 206 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 212 TCTCATATCAATTCAACAATGTTATGGAGGTGTAAGCAACTATACATGTACGTGTTTCTC 271 Query 207 TTCGGGCAATCGAAGTGATATCCTGGAATCTAACTGTTCGACATCATGTAATTGCAGACC 266 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | Sbjct 272 TTCGGGCAATCGAAGTGATATCCTGGAATCTAACTGTTCCACATCATGTAATTGCAGA-C 330 Query 267 AGCAGAAAGAGACCAATGGGTATGTTTGTGTCCTGCAAATGGATTTCCAGTAATAGCCAT 326 |||| ||||| ||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 331 --CAGACAGAGATCAATGGGTATGTTTGTGTCCTGCAAATGGATTTCCGGTTATAGCCAT 388 Query 327 TGGCGGTTCCAATTCTTCATGCTTCACTTCCTGCAACTGCTCTGCTGGAGCTTCAAAATC 386 ||| ||||| ||||| |||||||||||||| ||||||||||||||||| ||| ||||||| Sbjct 389 TGGTGGTTCAAATTCGTCATGCTTCACTTCATGCAACTGCTCTGCTGGTGCTACAAAATC 448 Query 387 TTCAAAGAGGCAATATTTATCGAGGAAACTCGTTATAGTTATAGTCCTCTTCTGTGGTGT 446 |||||||| |||||||||||||||||||||||||||||||||| | |||||||| ||||| Sbjct 449 TTCAAAGAAGCAATATTTATCGAGGAAACTCGTTATAGTTATACTACTCTTCTGCGGTGT 508 Query 447 ACTCACTTCACTAGCATTCCTTGCCTCTATGATTTGCTACATTTGTAGAAAGAACAAATT 506 ||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||| || Sbjct 509 ACTCATTTCACTAGCATTCCTTGCCTCTATGATTTGTTACATTTGTAGAAAGGACAAGTT 568 Query 507 TTCTGGAGAAAGCCCTTCAGTTTCTTCAGATAGAGAATCAAGTTGGCATAGCTCTGCCAA 566 ||||||| ||| ||||||||| ||||||||||||||||| || |||||||||||||| || Sbjct 569 TTCTGGACAAACCCCTTCAGTCTCTTCAGATAGAGAATCTAGCTGGCATAGCTCTGCTAA 628 Query 567 CTTAATAAACCGTAAAAGCTCGGTTTCACAATCGAAAATTAGCATCAGCTCCTCAGTGTC 626 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 629 CTTAATAAACCGTAAAAGCTCGGTTTCACAATCGAAAATTAGCATCAGCTCCTCAGTGGC 688 Query 627 AGGTTGCTTCTTTCAGAATGTTTCTTTGTTTTGTGTGAGCAGACCTGAAACAATCCATGG 686 |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct 689 AGGTTGCTTCTTTCAGAATGCTTCTTTGTTTTGTGTGAGCAAACCTGAAACAATCCATGG 748 Query 687 ATCGAT-TGTTCAGTTCTCATATACAGAATTAGAGCAAGCAACCAATAAATTCTCCAGTA 745 | | || | ||||||||||||| |||||||||||||||||||||||||||||||| |||| Sbjct 749 AGCTATCT-TTCAGTTCTCATACACAGAATTAGAGCAAGCAACCAATAAATTCTCAAGTA 807 Query 746 ACAGTGTAATAGGACATGGAGGAAGTAGCTGTGTTTACCGTGGACAGCTCAAAGACGGTA 805 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 808 ACAGTGTAATAGGACATGGAGGAAGTAGTTGTGTTTACCGTGGACAGCTCAAAGACGGTA 867 Query 806 AAACCGCTGCGATCAAACGTCTAAATACCCCTAAAGGAAATGACACTGACACTCTATTCT 865 |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| Sbjct 868 AAACCGCTGCGATCAAACGTCTAAATACCCCTAAAGGAGACGACACTGACACTCTATTCT 927 Query 866 CAACAGAGGTAGAGTTATTATCAAGACTCCATCATTACCATGTGGTTCCGTTAATTGGAT 925 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 928 CAACAGAGGTAGAGTTATTATCAAGACTCCATCATTACCATGTGGTACCGTTAATTGGAT 987 Query 926 ATTGTTCGGAGTTTCATGGCAAACATGCAGAGAGGCTTCTGGTTTTTGAGTACATGTCTT 985 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 988 ATTGTTCGGAGTTTCATGGCAAACATGCAGAGAGGCTTCTGGTTTTTGAGTACATGTCTT 1047 Query 986 ATGGAAGTCTGAGAGATTGCTTAGATGGAGAGTTGGGGGAGAAAATGACATGGAACATTC 1045 |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| | Sbjct 1048 ATGGAAGTCTAAGAGATTGCTTAGATGGAGAGTTAGGGGAGAAAATGACATGGAACATCC 1107 Query 1046 GAATATCTGTTGCTCTTGGAGCTGCAAGAGGTCTCGAGTATCTTCACGAAGCTGCTGCTC 1105 |||| ||||| |||||||||||||||||||| || ||||||||||| |||||||| |||| Sbjct 1108 GAATCTCTGTCGCTCTTGGAGCTGCAAGAGGACTTGAGTATCTTCATGAAGCTGCCGCTC 1167 Query 1106 CAAGAATCTTACACCGAGATGTAAAATCCACTAATATTCTCCTTGATGAGAATTGGCATG 1165 |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| Sbjct 1168 CAAGAATCTTACACCGAGATGTGAAATCCACAAATATTCTCCTTGATGAGAATTGGCATG 1227 Query 1166 CAAAAATAACCGATCTTGGGATGGCTAAGTGTTTGAGTAGCGACGGTTTACAAAGCGGTT 1225 |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1228 CAAAAATAACAGATCTTGGGATGGCTAAGTGTTTGAGTAGCGATGGTTTACAAAGCGGTT 1287 Query 1226 CAAGCTCTCCCACCAAAGGACTACAAGGAACATTTGGCTACTTTGCACCTGAATACGCAA 1285 |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1288 CAAGCTCTCCAACCACAGGACTACAAGGAACATTTGGCTACTTTGCACCTGAATACGCAA 1347 Query 1286 TTGCAGGATGTGCTTCACAGATGTCAGACGTTTTCAGCTTCGGTGTTGTTCTACTCGAGC 1345 |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| Sbjct 1348 TTGCAGGATGTGCTTCACAGATGTCAGATGTTTTCAGCTTTGGTGTTGTTCTACTCGAGC 1407 Query 1346 TTATAACCGGAAGAAAACCGATACAAAAACCAAGCAACAACAAAGGCGAAGAAAGCCTCG 1405 ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 1408 TTATAACCGGAAGGAAACCGATACAGAAACCAAGCAACAACAAAGGCGAAGAAAGCCTAG 1467 Query 1406 TTATTTGGGCTGTGCCGCGTTTACAAGATAGTAAGCGGGTGATCGACGAACTGCCTGATC 1465 |||| ||||||||||| || |||||||||||||||||||||||||| ||||||||||||| Sbjct 1468 TTATATGGGCTGTGCCACGGTTACAAGATAGTAAGCGGGTGATCGAGGAACTGCCTGATC 1527 Query 1466 CGCGGCTAAACGGGAAGTTTGCTGAAGAAGAGATGCAGATAATGGCGTATCTTGCTAAAG 1525 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1528 CGCGGCTAAACGGGAAGTTTGCGGAAGAAGAGATGCAGATAATGGCGTATCTTGCTAAAG 1587 Query 1526 AGTGTTTGCTTTTGGATCCAG-AAGCTAGACCAACTATGAGAGAAGTTGTTCAGATTCTT 1584 ||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||| Sbjct 1588 AGTGTTTGCTTTTGGATCCAGAAAG-TAGACCAACAATGAGAGAAGTTGTTCAGATTCTT 1646 Query 1585 TCAACCATCACACCAGACGCATCATCCAGACGTAGAAATTTCCCCATTAATTATCTTTTC 1644 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1647 TCAACCATCACACCAGACACATCATCCAGACGTAGAAATTTCCCCATTAATTATCTTTTC 1706 Query 1645 CAGAGCAACGAGAAGAAGAAAGAAAGCAAAGTGGGATGGTCAAGAGGTGGGAGCAAGAGT 1704 ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1707 CAGAGTAACGAGAAGAAGAAAGAAAGCAAAGTGGGATGGTCAAGAGGAGGGAGCAAGAGT 1766 Query 1705 GGACATGAGGATGAAACAGTGGACT-TGACTGAGCCACGGTTCGAGTCCTTCTGCTTGCC 1763 ||||| || || ||||||||||| | |||||||||||||||||||||| ||||||||||| Sbjct 1767 GGACAGGAAGAGGAAACAGTGGA-TCTGACTGAGCCACGGTTCGAGTCATTCTGCTTGCC 1825 Query 1764 GAATGTGAAGCCGGTCTTGCTTGAACCATCTGCACATATTTAAAAAGTAGATAGAAAAGC 1823 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1826 GAATGTGAAGCCGGTCTTGCTTGAACCATCTGCACATATTTAAAAAGTAGATAGAAAAGC 1885 Query 1824 ACAGAACAAAAACAGCCATCTCTCACTGTGTAGATAAAAAG-T------GA--AG--TG- 1871 ||||||||||||| ||||| || |||||||||||||||||| | || || || Sbjct 1886 ACAGAACAAAAACTGCCATTTCGCACTGTGTAGATAAAAAGCTCACTCTGACGAGAGTGA 1945 Query 1872 ----TTGAGACTTGAGAGTTTTCTATAAGTGAGAGTGTCAAGATTTGTTCTGAACTAGAG 1927 ||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||| Sbjct 1946 AGCGTTGAGACTTGAGAGTTTACTACAAGTGAGAGTGTCAAGATTTGTTCTAAACTAGAG 2005 Query 1928 AACTTTTAATTTATAATCTTAATAAA 1953 |||||||||| ||||| |||||||| Sbjct 2006 GACTTTTAATTGATAATTTTAATAAA 2031 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 96736450215 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5