BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481687
Length=831
Score E
Sequences producing significant alignments: (Bits) Value
AT2G28230.1 | Symbols: | TATA-binding related factor (TRF) of ... 1168 0.0
AT4G09070.1 | Symbols: | TATA-binding related factor (TRF) of ... 682 0.0
AT2G28020.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 399 2e-110
> AT2G28230.1 | Symbols: | TATA-binding related factor (TRF) of
subunit 20 of Mediator complex | chr2:12037677-12039046 REVERSE
LENGTH=875
Length=875
Score = 1168 bits (632), Expect = 0.0
Identities = 737/786 (94%), Gaps = 13/786 (2%)
Strand=Plus/Plus
Query 1 GTCTTTCTCCCTCAACAACAATGCCAGTGAAATGGGTTTTACATTGGCAACCAAACCAAG 60
||| ||||||||||||||||||||| || || ||||||||||||||||||||||||||||
Sbjct 18 GTCATTCTCCCTCAACAACAATGCCCGTCAAGTGGGTTTTACATTGGCAACCAAACCAAG 77
Query 61 GATCAACAGTAAGCAGCCAAATCCTAAACGAAGTAACACAATGTGTAGAGAGCATCAATG 120
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 78 GATCAACAGTAAGCAGCCAAATCCTAAACGAAGCAACACAATGTGTAGAGAGCATCAATG 137
Query 121 GTGTCAAAGAAGGAAGATGGAAAGCTACTCTCAACTATTACAAACCCATGTTACGAGACC 180
|||| |||||||||||||||||||| || |||||||||||||||||||||||| |||||
Sbjct 138 GTGTGAAAGAAGGAAGATGGAAAGCAACACTCAACTATTACAAACCCATGTTAAAAGACC 197
Query 181 AAGCGAATCAATCAGAGTTTCCTCGTGATTTTCTAGGGATTTCACTTGCGGATCAGCCGA 240
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 198 AAGCGAATCAATTGGAGTTTCCTCGTGATTTTCTAGGGATTTCACTTGCGGATCAGCCGA 257
Query 241 ATAAGTACTATTTCATTATCAGGTCACAGAGGATTGTGTTGGAAGCTGATTCTTCGATTC 300
||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||
Sbjct 258 ATAAGTACTATTTCATTATCAGGACGCAGAGGATTGTCTTGGAAGCTGATTCTTCGATTC 317
Query 301 AATTGATTATGGAGAAGCTTCAGTCTTATAAATCGAAAGTTGCGCTTTACTTTGATGGGT 360
| |||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||
Sbjct 318 AGTTGATTATGGAGAAGCTTCAGTCTTATAAATCTAAAGTGGCTCTTTACTTTGATGGGT 377
Query 361 TTCAGTATCAGCTTGGTGATTTTAGGTTGAGAGTTGGTAAAGTTGTTCCTACTCATTCTG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 378 TTCAGTATCAGCTTGGTGATTTTAGGTTGAGAGTTGGTAAAGTTGTTCCTACTCATTCTG 437
Query 421 AGAATGTTAGAGGAATTGTCATGGAGGTGGAGTATCTTCCTATATCATCAATGGAAAAGG 480
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 438 AGAATGTTAGAGGCATTGTCATGGAGGTGGAGTATCTTCCTATATCATCAATGGAAAAGG 497
Query 481 CACAAAAAGTGATGGAGGAGTTCTTGGAGATATGGAATGAAGCTCTGGCTAAAAGGTCGT 540
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 498 CACAAAAGGTGATGGAGGAGTTCTTGGAGATATGGAATGAAGCTCTGGCTAAAAGGTCGT 557
Query 541 TGCCGGGTAAGTTTGTGAACATAGATCTCAACTTTGGGGAGTTTGGACTTGGAGACAACT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 558 TGCCGGGTAAGTTTGTGAACATAGATCTCAACTTTGGGGAGTTTGGACTTGGAGACATCT 617
Query 601 ACACTCCACAACACACCGCTGTTCGATATGCTCTCGTGATGGCTCACATGATTGCTACCG 660
|||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||
Sbjct 618 ACACTCCACAACACACAGCTGTTCGTTACGCTCTCGTGATGGCTCACATGATTGCTACCG 677
Query 661 TTCAAGCTGTGAGAGGCTAATACTTGTTC-TGAAATC-GTATTTCTAGGTAAAATTCTGT 718
|||||||||||||||||||| || | | || | |||||||||||||||||| |||
Sbjct 678 TTCAAGCTGTGAGAGGCTAA-ACCAAAACAT-AACTTAGTATTTCTAGGTAAAATTATGT 735
Query 719 G-TTCTGCAATATTTGTGATTTCTTT----GGTCATGTTTATCTATATGCA-C-T-GAGA 770
| || ||||||||| ||||||||||| ||||||||||||||||| | | | | ||||
Sbjct 736 GCTT-TGCAATATTAGTGATTTCTTTCTTTGGTCATGTTTATCTATAAGAAGCATTGAGA 794
Query 771 AAAAAT 776
||||||
Sbjct 795 AAAAAT 800
> AT4G09070.1 | Symbols: | TATA-binding related factor (TRF) of
subunit 20 of Mediator complex | chr4:5802308-5803392 FORWARD
LENGTH=660
Length=660
Score = 682 bits (369), Expect = 0.0
Identities = 571/668 (85%), Gaps = 16/668 (2%)
Strand=Plus/Plus
Query 21 ATGCCAGTGAAATGGGTTTTACATTGGCAACCAAACCAAGGATCAACAGTAAGCAGCCAA 80
||||| || |||||| |||| |||||||||||||| || ||||||||| | |||||||||
Sbjct 1 ATGCCCGTCAAATGGCTTTTGCATTGGCAACCAAATCAGGGATCAACATTTAGCAGCCAA 60
Query 81 ATCCTAAACGAAGTAACACAATGTGTAGAGAG-CATCAATGGTGTCAAAGAAGGAAGATG 139
||||||||||||||||||||| | ||||||| | ||||||| |||||||| |||| |||
Sbjct 61 ATCCTAAACGAAGTAACACAAAGCATAGAGAGTC-TCAATGGCGTCAAAGAGGGAACATG 119
Query 140 GAAAGCTACTCTCAACTATTACAAACCCATGTTACGAGACCAAGCGAATCAATCAGAGTT 199
|||||| |||||||||||||||||||||||||| | ||| || ||||||||| | |||||
Sbjct 120 GAAAGCCACTCTCAACTATTACAAACCCATGTTGCAAGATCAGGCGAATCAAGCTGAGTT 179
Query 200 TCCTCGTGATTTTCTAGGGATTTCACTTGCGGATCAGCCGA-ATAAGTACTATTTCATTA 258
|| ||||| ||| |||| ||||| ||| |||| |||| | |||||||||||||| | |
Sbjct 180 CCCGCGTGAATTTGTAGGAATTTCGCTTCCGGAGGAGCC-AGATAAGTACTATTTCGTCA 238
Query 259 TCAGGTCACAGAGGATTGT-GTTGGAAGCTGATTCTTCGATTCAATTGATTATGGAGAAG 317
||||||| || ||||| || | ||||||| |||||||| |||||| |||| |||||| ||
Sbjct 239 TCAGGTCGCAAAGGATCGTCG-TGGAAGCAGATTCTTCAATTCAAATGATCATGGAG-AG 296
Query 318 -CTTCAGTCTTATAAATCG-AAAGT-TGCGCTTTACTTTGATGGGTTTCAGTATCAGCTT 374
||||||||||| |||| | ||| | | || |||||||||| ||| || ||||||| |||
Sbjct 297 CCTTCAGTCTTACAAAT-GCAAACTCT-CGTTTTACTTTGAAGGGCTTGAGTATCAACTT 354
Query 375 GGTGATTTTAGGTTGAGAGTTGGTAAAGTTGTTCCTACTCATTCTGAGAATGTTAGAGGA 434
|| |||||| | |||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 355 GGGGATTTTCGTTTGAGAGTTGGTAAAGTTGTTCCTACTCATGCTGAGACCATTAGAGGC 414
Query 435 ATTGTCATGGAGGTGGAGTATCTTCCTATATCATCAATGGAAAAGGCACAAAAAGTGATG 494
| ||||||||||||||||||||||||||||||||||||| || |||| ||||| |||||
Sbjct 415 GTAGTCATGGAGGTGGAGTATCTTCCTATATCATCAATGGGAATGGCAAAAAAATTGATG 474
Query 495 GAGGAGTTCTTGGAGATATGG-AATGAAGCTCTGGCTAAAAGGTCGTTGCCGGGTAAGTT 553
||||||||||||||||||||| || |||||| || | |||||||||||||||||||||||
Sbjct 475 GAGGAGTTCTTGGAGATATGGCAA-GAAGCTATGTCGAAAAGGTCGTTGCCGGGTAAGTT 533
Query 554 TGTGAACATAGATCTCAACTTTGGGGAGTTTGGACTTGGAGACAACTACACTCCACAACA 613
|||||||| ||| |||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 534 TGTGAACAAAGAACTCAACTTTGAAAAGTTTGGACTTGGAGACAACTACACTCCGCAACA 593
Query 614 CACCGCTGTTCGATATGCTCTCGTGATGGCTCACATGATTGCTACCG-TTCAAGCTGTGA 672
||||||||| |||||||| || | |||||| | |||| || | | ||||||||| ||
Sbjct 594 TACCGCTGTTGGATATGCTTTCTTCATGGCTAATTTGATGGC-AGCAATTCAAGCTGGGA 652
Query 673 GAGGCTAA 680
||||||||
Sbjct 653 GAGGCTAA 660
> AT2G28020.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: TATA-binding related factor (TRF) of subunit 20 of
Mediator complex (TAIR:AT2G28230.1); Has 37 Blast hits to 37
proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr2:11933702-11934060 FORWARD LENGTH=359
Length=359
Score = 399 bits (216), Expect = 2e-110
Identities = 304/344 (88%), Gaps = 15/344 (4%)
Strand=Plus/Plus
Query 445 AGGTGGAGTATCTTCCTATATCATCAATGGAAA-AGGCACA-AAAAGTGATGGAGGAGTT 502
||||||||||||||||||||||||||||||||| | ||| | ||||||||||||||||||
Sbjct 1 AGGTGGAGTATCTTCCTATATCATCAATGGAAATA-GCA-AGAAAAGTGATGGAGGAGTT 58
Query 503 CTTGGAGATATGGAATGAAGCTCTGGCTAAAAGGTCGTTGCCGGGTAAGTTTGTGAACAT 562
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 59 CTTGGAGATATGGAATGAAGCTCTGGCTAAAAGGTCGTTACCGGGTAAGTTTGTGAACAA 118
Query 563 AGATCTCAACTTTGGGGAGTTTGGACTTGGAGACAACTACACTCCACAACACACCGCTGT 622
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 AGATCTTAACTTTGGGGAGTTTGGACTTGGAGACAACTACACTCCACAACACACCGCTGT 178
Query 623 TCG-A-T-ATGCTCTCGTGATGGCTCACATGATTGCTACCGTTCAAGCTGTGAGAGGCTA 679
||| | | | |||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 179 TCGTAATTACGCTCTCGTTATGGCTCACATGATTGCTACCGTTCAAGCTGTGAGTGGCTA 238
Query 680 ATACTTGTTCTGAAATC-GTATTTCTAGGTAAAATTCTGTGTTCTGCAATATTTGTGATT 738
| || || | | |||||| ||||| ||||||||||| ||| |||| ||||||
Sbjct 239 A-ACCAAAACTCAGCTTTGTATTT--AGGTAGAATTCTGTGTTTTGCGTTATTAGTGATT 295
Query 739 TCTTTGGTCATGTTTATCTATATGCA-C-T-GAGAAAAAA-TTG 778
|| || | |||||||||||||| | | | | ||||||||| |||
Sbjct 296 TCGTTAGCCATGTTTATCTATAAGAAGCATTGAGAAAAAAATTG 339
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40488722482
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5