BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481691
Length=2613
Score E
Sequences producing significant alignments: (Bits) Value
AT2G28180.1 | Symbols: ATCHX8, CHX8, CHX08 | Cation/hydrogen ex... 3690 0.0
> AT2G28180.1 | Symbols: ATCHX8, CHX8, CHX08 | Cation/hydrogen
exchanger family protein | chr2:12010994-12013890 REVERSE LENGTH=2602
Length=2602
Score = 3690 bits (1998), Expect = 0.0
Identities = 2425/2628 (92%), Gaps = 41/2628 (2%)
Strand=Plus/Plus
Query 1 ATTTCTTTTGTTATCGTCTTCCCCATTTTCACAAGAACTCTCACATAAGATTTT-ATAGT 59
|||| |||||||||||||||||||||||| ||||||| ||||| ||||||||| | |||
Sbjct 1 ATTTATTTTGTTATCGTCTTCCCCATTTTGACAAGAA--CTCACTTAAGATTTTGA-AGT 57
Query 60 TATGGATATGGGGAATGGGACAGGACCCGGGATGTCGGGGGCTTTTAGTGGAGGCGGCGA 119
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 58 CATGGAAATGGGGAACGGGACAGGACCCGGGATGTCGGGGGCTTTTAGTGGAGGCGGCAA 117
Query 120 CGAGATGATGGGAATGGGAGGTGGCGGCGACGTAATGACGGGAATGGTAGGCGGTGAGGT 179
|||||| ||||||||||||||||||||| | || ||||| ||||||||| |
Sbjct 118 CGAGATTTTGGGAATGGGAGGTGGCGGCG--G-CAT------AATGGGAGGCGGTGATAT 168
Query 180 TACGGAGATGAGTCCTGAAGTAAGATGGATATTTGAGATGGCTTGGTATGGTGAAACTTT 239
| | | |||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 169 TTCACATATGAGTCCTGAAGTAAAATGGATATTTGAGATGGCTTGGTATGGTGAAACTGT 228
Query 240 AAGAGACGATGGGTTGATTTGCGAGGAGCATCCCCCTAAGCTGTCTTCAGATGGTATTTG 299
|||| | |||||||| ||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 229 AAGATATGATGGGTTAATTTGTGAGGAGCATCCCCCTAAGCTCTCTTCAGATGGTATTTG 288
Query 300 GGAGAAACTTATTGTGAAAACGGTAGGTCTTTATTTTTGGCAATATCGTCTTCCGAAGCT 359
||||||||||||| | ||| ||| |||||| |||||||||||||||||||||||||||||
Sbjct 289 GGAGAAACTTATTATTAAATCGGCAGGTCTATATTTTTGGCAATATCGTCTTCCGAAGCT 348
Query 360 CGAGATTGTCATCTTGCTCGTCTT-TTTCCTTTGGCAAGCCTTTAATATCCTGTTCAAGA 418
|||||||||||||||||||||||| ||| |||||||||| |||||||||| |||| ||||
Sbjct 349 CGAGATTGTCATCTTGCTCGTCTTCTTT-CTTTGGCAAGGCTTTAATATCTTGTTTAAGA 407
Query 419 AATTGCGTCTTTCTGTTCCCAAGTTCTCCTCTATGATGCTCGCTGGGCTACTCTTGAATG 478
||||| |||||||| |||||||||| |||||||||||||| || ||||||||||||||||
Sbjct 408 AATTGGGTCTTTCTATTCCCAAGTTATCCTCTATGATGCTTGCAGGGCTACTCTTGAATG 467
Query 479 TTGTAGTTACTTTATCGGGAGACAACTCGCTCATTGGGGAGATCTTAGTCACCAAAAACA 538
|| ||||||||||||||||||| |||||| |||||| ||| ||||| ||||| |||||||
Sbjct 468 TTCTAGTTACTTTATCGGGAGAGAACTCGATCATTGCGGATATCTTGGTCACGAAAAACA 527
Query 539 GAGTCGACATAGCAGCACT-CCTTGGATCATTTGGATTCTTGATTTTCTGGTTCCTCAAA 597
|| ||||| |||||| | | ||||||||||||||||||||||||||||||||||||||||
Sbjct 528 GAATCGACGTAGCAGGA-TGCCTTGGATCATTTGGATTCTTGATTTTCTGGTTCCTCAAA 586
Query 598 GGTGTGAA-AATGGACGTCAAGAGAATCTTCAAGGCTGAAGCAAAAGCAAGAGTCACTGG 656
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 587 GGTGT-AAGAATGGACGTCAAGAGAATCTTCAAGGCTGAAGCAAAAGCAAGAGTCACTGG 645
Query 657 AGTTGCATCGGTTACTTTCCCTATACTTGTTGGCTTCTTCCTTTACTCGCTCAAATCAGC 716
||||||| ||||||||||||||||| ||||||||||||| |||| | |||||||||||
Sbjct 646 AGTTGCAGCGGTTACTTTCCCTATAGTTGTTGGCTTCTTGCTTTTCAATCTCAAATCAGC 705
Query 717 TGAGAATCGACCGCTCA-GTGCCAACGAGTATGACATAATGCTGCTAATGGAAAGCATCA 775
| |||||||||| |||| | |||| |||||||| ||||||| ||||||||||||||||
Sbjct 706 TAAGAATCGACCTCTCACTTTCCAA-GAGTATGATGTAATGCTACTAATGGAAAGCATCA 764
Query 776 CATCCTTCTCGGGGATCGCAAGACTCTTGCGCGACCTCGGCATGAACCATTCATCTATTG 835
| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 765 CGTCCTTCTCGGGGATCGCAAGACTCTTGCGTGACCTTGGCATGAACCATTCATCTATTG 824
Query 836 GCCGGGTCGCTTTATCCTCAGCCTTAGTCTCTGATATAGTTGGACTCCTGCTCTTGGTGG 895
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 825 GCCGGGTTGCTTTATCCTCAGCCTTAGTCTCTGATATAGTTGGACTCCTGCTCTTGATTG 884
Query 896 CGAACGTTTCTAG-AGTTTCA--AAGTCTTTTA-ATGATGGTCTGTCTATACTTTTTGAG 951
||||||||||||| || |||| || | |||| ||||||| || |||||||| |||
Sbjct 885 CGAACGTTTCTAGAAG-TTCAGCAA--C-TTTAGCTGATGGTTTGGCTATACTTACAGAG 940
Query 952 ATATCCTTATTTCTCGTCATTGCGTTTGCGGCTGTGAGGCCGTTAATGTTTAAAGTAATC 1011
||| ||||||| ||||||||||| ||||||| |||||||||| ||||||| ||| ||||
Sbjct 941 ATAACCTTATTCCTCGTCATTGCATTTGCGGTTGTGAGGCCGATAATGTTCAAAATAATA 1000
Query 1012 AAGCGGAAACGAGAAGGGAGACCAATCGAAGACAAATACATCTACGGGATTCTCGTCTTG 1071
||||||||| ||||||| |||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1001 AAGCGGAAAGGAGAAGGAAGACCAATCGAAGACAAATACATCCACGGGGTTCTCGTCTTG 1060
Query 1072 GTTTGCTTATCTTGTATGTATTGGGAAGATCTCAGTCAGTTTCCTCCACTTGGAGCCTTC 1131
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1061 GTTTGCTTATCTTGTATGTATTGGGAAGATCTTAGCCAGTTTCCTCCACTTGGAGCCTTC 1120
Query 1132 TTTCTTGGCCTCGCCATTCCCAATGGACCTCCTATTGGATCTGCATTGGTCGAACGATTA 1191
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1121 TTTCTTGGTCTCGCCATTCCCAATGGACCTCCTATTGGATCTGCATTGGTCGAACGATTA 1180
Query 1192 GAGAGCTTCAATTTTGGTATCATATTGCCTCTCTTCTTATCAGCCATTATGCTCAGGACT 1251
|| ||||||||||||||||||||||| ||||| |||||| ||||| ||||||||||||||
Sbjct 1181 GAAAGCTTCAATTTTGGTATCATATTACCTCTTTTCTTAACAGCCGTTATGCTCAGGACT 1240
Query 1252 GATATCACTTCTTGGAAAGGCTG-TTTGACATTCTTTAGCAGCGATGATAAGAAATTTGC 1310
|||| |||| ||||||||||| | ||||||||||||||| |||||||||||||||||||
Sbjct 1241 GATACCACTGCTTGGAAAGGC-GCTTTGACATTCTTTAGTGGCGATGATAAGAAATTTGC 1299
Query 1311 GGTTGCGTCTCTCATCTTGCTCATCTTCTTGTTGAAGCTCTCTGTCTCAGTGATTGTACC 1370
||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||| ||
Sbjct 1300 GGTTGCGTCTCTCGTCTTGCTCATTTTCTTGTTGAAGCTCTCTGTCTCAGTCATTGTTCC 1359
Query 1371 TTACCTCTATAAAATGCCGTTGAGAGACTCTATTATCCTTGCCCTTATCATGTCTCATAA 1430
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1360 TTACCTCTATAAAATGCCGTTGAGAGACTCTATTATCCTTGCCCTAATAATGTCTCATAA 1419
Query 1431 GGGTATTATCGAACTCAGCTTCTACCTTTTCTCT-TACAGCCTCGTGATGGTAAGCAAAG 1489
|||||||||||||||||||||||||||||||||| || |||||| | |||||| |||||
Sbjct 1420 GGGTATTATCGAACTCAGCTTCTACCTTTTCTCTCTA-AGCCTCAAGTTGGTAACCAAAG 1478
Query 1490 ATACATTCTCAATCCTAGTCTTGTCCATTGTCCTCAACTCTGTGTTCATACCAGTAGTGA 1549
||||||||||||| ||||||||||||||||||||||||||| || |||||||| | | ||
Sbjct 1479 ATACATTCTCAATTCTAGTCTTGTCCATTGTCCTCAACTCTCTGCTCATACCAATGGCGA 1538
Query 1550 TCGGGTTTCTCTACGATCCATCTAAGCAATTCATGTGCTACCAAAAGAGAAATTTAGCGA 1609
|||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1539 TCGGGTTTCTCTACGACCCATCTAAACAATTCATATGCTACCAAAAGAGAAATTTAGCGA 1598
Query 1610 GTATGAAGAACAGT-GGAGAGCTAAAGACTCTTGTGTGCATCCATAGACCAGACCACATA 1668
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1599 GTATGAAGAACA-TGGGAGAGCTAAAGACTCTTGTGTGCATCCATAGACCAGACCACATA 1657
Query 1669 TCTTCCATGATCAACCTT-TTAGAAGCTTCTTATCAATCCGAAGAGAGCCCTCTCACTTG 1727
|||||||||||||||||| || ||||||||||||||||||||||| || |||||||||||
Sbjct 1658 TCTTCCATGATCAACCTTCTT-GAAGCTTCTTATCAATCCGAAGACAGTCCTCTCACTTG 1716
Query 1728 CTACGTGCTTCACCTCGTCGAGTTACAAGGTCAAGACGTTCCCACTTTGATCTCACACAA 1787
|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1717 CTACGTCCTTCACCTCGTCGAGTTACGAGGTCAAGACGTTCCCACTTTGATCTCACACAA 1776
Query 1788 AGTTCAGAAACTAGGAGTCGGGTCTGGAAAGAAATATTCCGAAAACGTCATTCTCTCTTT 1847
|||||||||||| ||||||||| ||||||| |||||||||||||| ||||| ||||||||
Sbjct 1777 AGTTCAGAAACTCGGAGTCGGGGCTGGAAATAAATATTCCGAAAATGTCATCCTCTCTTT 1836
Query 1848 TGAACATTTCCACCGTTATGTCTGCAGTTCCATTTCCATAGACACATTCACTTGCATCGC 1907
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1837 TGAACATTTCCACCGTTCTGTCTGCAGTTCCATTTCCATAGACACATTCACTTGCATCGC 1896
Query 1908 AAACGCGAACCATATGCAGGATGATATTTGTTGGCTAGCTCTTGATAAAGCTGTCACACT 1967
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1897 AAACGCAAACCATATGCAGGATGACATTTGTTGGCTAGCTCTTGATAAAGCTGTCACGCT 1956
Query 1968 TATCATTCTTCCTTTCCACCGGACTTGGTCACTTGACCGAACATCCATCGTATCCGACGT 2027
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1957 TATCATTCTTCCTTTTCACCGGACTTGGTCACTTGACCGAACATCCATCGTATCCGACGT 2016
Query 2028 TGAGATGACCCGATTTCTCAATCTCAATGTCTTGAAACAAGCTCCTTGCTCTGTCGGCAT 2087
|||| || ||||||||| ||| |||| |||||||||||||| |||||||||||||||||
Sbjct 2017 TGAGGCGATCCGATTTCTGAATGTCAACGTCTTGAAACAAGCACCTTGCTCTGTCGGCAT 2076
Query 2088 TCTTATCGAACGCCATCTCGTTAACAAAAAGCAAGAACCGCA-GCAAAGCCTTAAGGTGT 2146
||||||||||||||||||||||||||| ||||||||||| || | |||||||||||||||
Sbjct 2077 TCTTATCGAACGCCATCTCGTTAACAAGAAGCAAGAACCACATG-AAAGCCTTAAGGTGT 2135
Query 2147 GTACAATATTCGTGGGAGGAAAAGACGATAGGGAAGCTCTGGCCTTTGCGAAGCGAATGG 2206
|| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2136 GTGTAATATTCGTGGGAGGAAAAGACGATAGGGAAGCTTTGGCCTTTGCGAAGCGAATGG 2195
Query 2207 CCC-TACAAGAGAACGTAACATTAACAGTTCTACGCCTCCTGGCATCGGGAAAGAGCAAA 2265
||| | ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 2196 CCCGT-CAAGAGAACGTAACATTAACAGTTCTACGCCTCCTAGCATCAGGAAAGAGCAAA 2254
Query 2266 GAAGCGACAGGATGGGATCAAATGCTTGACACAGTGGAACTAAGAGAGTTGATGAAAAGC 2325
|| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 2255 GACGCGACAGGATGGGATCAAATGCTTGACACGGTGGAACTAAGAGAGTTGATTAAAAGC 2314
Query 2326 AACGATGCCGGAACAGTAAAAGAAGAAACATCAACAATTTACTTGGAACAAGAGATATTG 2385
||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2315 AACAATGCCGGAATGGTAAAAGAAGAAACATCAACAATTTATTTGGAACAAGAGATATTG 2374
Query 2386 GATGGAGCGGATACGTCAATGCTTCTACGTTCCATGGCATTCGATTATGATCTTTTCGTC 2445
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 2375 GATGGAGCGGATACGTCAATGCTTCTACGTTCCATGGCTTTCGATTACGATCTTTTCGTC 2434
Query 2446 GTGGGAAGAACATGTGGCGAAAACCACGAGGCAACTAGCGGTATAGAGAATTGGTGTGAG 2505
|||||||||||||| ||||| |||||||||||||| | |||||||||||||||||||||
Sbjct 2435 GTGGGAAGAACATGCGGCGAGAACCACGAGGCAACCAAAGGTATAGAGAATTGGTGTGAG 2494
Query 2506 TTTGAGGAGCTTGGAGTCATTGGTGATTTCTTGGCCTCGCCGGATTTCCCGAGCAAAACG 2565
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 2495 TTTGAGGAGCTTGGAGTCATTGGTGATTTCTTGGCCTCGCCGGATTTTCCGAGTAAAACA 2554
Query 2566 TCGGTGTTAGTAGTGCAACAACAACGAACGGTAGTCAATAATAATTAG 2613
|||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2555 TCGGTGTTAGTAGTGCAACAACAACGAACGGTAGCCAATAATAATTAG 2602
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 129731714598
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5