BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481692
Length=1296
Score E
Sequences producing significant alignments: (Bits) Value
AT2G28170.1 | Symbols: ATCHX7, CHX7 | Cation/hydrogen exchanger... 1277 0.0
> AT2G28170.1 | Symbols: ATCHX7, CHX7 | Cation/hydrogen exchanger
family protein | chr2:12006371-12009956 REVERSE LENGTH=2406
Length=2406
Score = 1277 bits (691), Expect = 0.0
Identities = 852/930 (92%), Gaps = 9/930 (1%)
Strand=Plus/Plus
Query 352 CCTGACCACATAACCTCCATGGTCAACTTTCTAGATGTTTTTAACCCAACACAAGATTCA 411
|||||||||||||| ||||||||||||||| | || ||||||||||||||||||| |||
Sbjct 1474 CCTGACCACATAACATCCATGGTCAACTTTGTGGAACTTTTTAACCCAACACAAGAATCA 1533
Query 412 CAATTGGAATGCAACGTTGTTCAACTAGGGGAGCTCATAGGTCAAGCCAGTCCTACCTTC 471
|||| |||||||| ||| |||| || | ||||||||||||||| |||| ||||||||||
Sbjct 1534 AAATTAGAATGCAATGTTCTTCACCTTGTGGAGCTCATAGGTCAGGCCATTCCTACCTTC 1593
Query 472 ATTTCCCACAAGATGCAAAAGCCGAGGGTTGGAACACGCTCTTACTCCCGCAATGTCATA 531
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1594 ATTTCCCACAAGATGCAAAAGCCGAAGGTTGGAACACGCTCTTGCTCCCGCAATGTCATA 1653
Query 532 ACTGCATTCTTAAATCTTCGTAGACATTTCACCGAAGAGGCAATGTCCATTGACATCTTT 591
||||||||||||| |||||||||||||| ||| |||||||||| |||||||||||||||
Sbjct 1654 ACTGCATTCTTAAGCCTTCGTAGACATTTAACCAAAGAGGCAATTTCCATTGACATCTTT 1713
Query 592 ACATATGCAAGCTTGGTAGATCACATGCACGAGGACCCCTTTTGGCTTGCCCTTGACAA- 650
|||| ||| ||||||||||| |||||||||||||||| || ||||||||||||||||||
Sbjct 1714 ACATCTGCTAGCTTGGTAGAGCACATGCACGAGGACCTCTGTTGGCTTGCCCTTGACAAG 1773
Query 651 AATTGTAGCTCTCGTTGTGCTTCCTTTTCACCGTTCTTGGTCTGTTGACCGCTCAACCGT 710
|| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 1774 AA-TGTAGCTCTCGTTGTACTTCCTTTTCACCGTTCTTGGTCTGTTGACCGCTCAACCAT 1832
Query 711 GGTCACTGACGACAAGGCCATGCAGAATCTCAACCGTAATGCCTTGAAAAGAGCGTCTTG 770
||| |||||||||||||||||||||||||||||| || | ||||||||||||||||||
Sbjct 1833 TGTCTCTGACGACAAGGCCATGCAGAATCTCAACCACAAAGTCTTGAAAAGAGCGTCTTG 1892
Query 771 CTCTGTTGGAGTCTTCGGCTACCGGAAACCTCTATGGGAATCTCAAATGGACGGATCATG 830
|||||||||| |||||| ||||||||||||| ||||||||||||||||| |||| |||||
Sbjct 1893 CTCTGTTGGAATCTTCGTCTACCGGAAACCTTTATGGGAATCTCAAATGCACGGCTCATG 1952
Query 831 TTACAAGGTGTGTGCAATAGTTGTGGGAGGGAAAGACGATAGAGAAGCCTTAGCATTTAC 890
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 1953 TTACAAGGTGTGTGCAATAGTTGTGGGAGGGAAAGACGATAAAGAAGCCTTAGCATTCAC 2012
Query 891 CAACCGTATGAGGAGAAACAAGCAGACAAGCGTAACCATCTTACGCCTCATCCCTCAACT 950
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 2013 CAACCGTATGAGGAGAAACAAGCAGACAAGCGTAACCATCTTACACCTCATACCTCAACT 2072
Query 951 TACTACGGGGGAAAGCGATGACTCGGTGCAGAAGTTGGATTTCGAGGACA-AAAAGGGGA 1009
|||||| | ||||||||| |||||||||||||||||||||| ||| |||| ||||| | |
Sbjct 2073 TACTACCGAGGAAAGCGAAGACTCGGTGCAGAAGTTGGATTACGATGACATAAAAGAG-A 2131
Query 1010 TAATGAACAATGAGGAGGATTCAAATGAAAATGATTCCATG-ATATGTATCGAAAAAAGG 1068
||||||| | |||||| |||||||||||||||||| ||| |||||||| ||||||||
Sbjct 2132 TAATGAAGACTGAGGA---TTCAAATGAAAATGATTC-ATGGATATGTATAGAAAAAAGC 2187
Query 1069 GTCAAAGAAGGGGCTGAGACTTCAATGATACTAAGATCAATAGCGTATGATTATGCTTTG 1128
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||
Sbjct 2188 GTCAAAGAAGGGGCTGAGACTTCAGTGATACTTAGATCAATAGCGTATGATTATGATTTG 2247
Query 1129 TTTATAGTTGAAAGTAGCAGCGGAATGAATAGCGCGGTTACGCAAGGATTGAATGAACGG 1188
|||||||||| ||| || ||||||||||||||||| ||||| ||||||| |||||| ||
Sbjct 2248 TTTATAGTTGGAAGAAGTAGCGGAATGAATAGCGCAGTTACAAAAGGATTAAATGAATGG 2307
Query 1189 ACAGAGTTTGAGGAACTTGGAGCCATCGGAGATGTTATAGCGTCAAAGGAATTTCCTTCA 1248
|||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 2308 ACAGAGTTCGAGGAACTTGGAGCCCTCGGAGATGTTATAGCGTCAAAGGAGTTTCCTTCA 2367
Query 1249 AGGGTATCTGTCTTGGTCTTGCAACAGCAA 1278
|||| |||||||||||||||||||||||||
Sbjct 2368 AGGGCATCTGTCTTGGTCTTGCAACAGCAA 2397
Score = 340 bits (184), Expect = 2e-92
Identities = 232/254 (91%), Gaps = 7/254 (3%)
Strand=Plus/Plus
Query 46 TTGACAGATCTCAAGATCAAGCATTCCGAGTTTGGACGAATGGTTCAGTCTTGTGCCGCG 105
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 625 TTGACAGATCTCAAGATCAACCATTCCGAGTTTGGACGAATGGTTCAGTCTTGTGCCGCG 684
Query 106 GTCACTGACTTAGTAATCTTTATAATGGCCTCCGGGACGGTTCTTTTAAAAGGACAAAAA 165
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 685 GTCACTGACTTAGTAATCTTTATAATGGTCTCCGGGACCGTTCTTTTAAAAGGACAAAAA 744
Query 166 GGTTTACCACATGTTATGGTTATTGTTTCG-TTATCGTCTTCTTGGTCTACATCGTATAT 224
||||||||||||| ||| ||||| |||| | |||| | ||||||||||||||||||||
Sbjct 745 GGTTTACCACATGGTATTGTTATCGTTTTGGTTATAGGCTTCTTGGTCTACATCGTAT-- 802
Query 225 ATGGCCGGAAATGTTATGGATTATCAAACAGACTCCAGAAGGCAGGCCTG-TTAAAGAAG 283
|||||| ||||||||||||||||| ||||| ||||||||||||| || ||||||| |
Sbjct 803 --GGCCGGTCATGTTATGGATTATCAAGCAGACACCAGAAGGCAGGC-TGGTTAAAGATG 859
Query 284 TCTACATCTACTTG 297
||||||| ||||||
Sbjct 860 TCTACATTTACTTG 873
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63754692150
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5