BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481693
Length=1161
Score E
Sequences producing significant alignments: (Bits) Value
AT2G28160.1 | Symbols: FIT1, ATBHLH029, FRU, BHLH029, ATBHLH29,... 1729 0.0
> AT2G28160.1 | Symbols: FIT1, ATBHLH029, FRU, BHLH029, ATBHLH29,
ATFIT1 | FER-like regulator of iron uptake | chr2:12004708-12006122
FORWARD LENGTH=1176
Length=1176
Score = 1729 bits (936), Expect = 0.0
Identities = 1088/1163 (94%), Gaps = 4/1163 (0%)
Strand=Plus/Plus
Query 1 CACAAATGGAAGGAAGAGTCAACGCTTTGTCAACCATAAACGATCTAGAACTTCACGATT 60
|||||||||||||||||||||||||| |||||| |||||||||||| ||||||||| |||
Sbjct 1 CACAAATGGAAGGAAGAGTCAACGCTCTGTCAAACATAAACGATCTCGAACTTCACAATT 60
Query 61 TCTTGGTCGATCCAAACTTCGATCAGTTCATAAATCTCATACGAGGTGATCATCAAGCCA 120
|||||||||||||||||||||||||||||||||| |||||| |||| ||||||||| |||
Sbjct 61 TCTTGGTCGATCCAAACTTCGATCAGTTCATAAACCTCATAAGAGGAGATCATCAAACCA 120
Query 121 TCGACGAAAACCCAGTTCTTGATTTCGATCTTGGTCCATTACAAAACAGCCCATGTTTCA 180
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 121 TTGACGAAAACCCAGTTCTTGATTTCGATCTTGGTCCATTACAAAACAGCCCCTGTTTCA 180
Query 181 TAGACGAGAACCAGTTCATCCCAACACCTGTCGATGACCTGTTCGACGAACTGCCTGACT 240
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 181 TAGACGAGAACCAGTTCATCCCAACACCTGTCGATGACCTCTTCGACGAATTGCCTGACT 240
Query 241 TAGACTCCAATGTCGCTGAATCTTTCCGTAGCTTTGATGGTGAGAGTGTTAGAGCCAACG 300
|||||||||| || |||||||| ||||||||||| || ||||| |||||||||||| |
Sbjct 241 TAGACTCCAACGTTGCTGAATCATTCCGTAGCTTCGACGGTGATAGTGTTAGAGCCGGTG 300
Query 301 GCgaagaagaagaagaagaTTACAACGACGGTGATGATTCCTCTGCCACTACGACGAATA 360
| |||||||| ||||||||||||||||||||||||||||| || |||||||| |||||||
Sbjct 301 GTGAAGAAGATGAAGAAGATTACAACGACGGTGATGATTCTTCAGCCACTACTACGAATA 360
Query 361 ATGATGGAAGCCGTAAGACTAAGACTGATCGGTCTAGGACTTTGATCTCTGAGAGAAGAA 420
||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ATGATGGGACCCGTAAGACGAAGACTGATCGGTCTAGGACTTTGATCTCTGAGAGAAGAA 420
Query 421 GGAGAGGTCGTATGAAGGATAAGCTTTATGCATTGAGATCTCTTGTTCCTAACATTACTA 480
||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 421 GGAGAGGGCGTATGAAGGATAAGCTTTATGCATTGAGATCTCTTGTTCCCAATATTACTA 480
Query 481 AGATGGATAAAGCATCTATCGTTGGAGATGCGGTGTCGTATGTTCAAGAACTTCAGTCAC 540
|||||||||||||||| || ||||||||||| |||| |||||||||||||||||||||||
Sbjct 481 AGATGGATAAAGCATCCATTGTTGGAGATGCAGTGTTGTATGTTCAAGAACTTCAGTCAC 540
Query 541 AAGCCAAGAAACTCAAATCCGATATCGCGGGACTTGAAGCTTCTTTAAACTTTACTGGTG 600
|||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
Sbjct 541 AAGCGAAGAAACTCAAATCCGATATCGCGGGTCTTGAAGCTTCTTTAAACTCTACTGGAG 600
Query 601 GGTACCAAGAACCTGCTCCGGATGCTCAAAAGACTCAACCTTTTCGCGGTATCAATCCTC 660
|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GGTACCAAGAACATGCTCCTGATGCTCAAAAGACTCAACCTTTTCGCGGTATCAATCCTC 660
Query 661 CGGTTTCCAAGAAAATCGTTCAGATGGATGTTATTCAAGTGGAGGAGAAAGGGTTTTATG 720
| | |||||| |||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 661 CTGCTTCCAAAAAAATCATTCAGATGGATGTTATACAAGTGGAGGAGAAAGGGTTTTATG 720
Query 721 TGAGATTGGTGTGTAATAAAGGAGAAGGTGTTGCTCCATCTCTTTACAAGTCTTTGGAGT 780
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TGAGATTGGTGTGTAACAAAGGAGAAGGTGTTGCTCCATCTCTTTACAAGTCTTTGGAGT 780
Query 781 CTCTTACAAGTTTCCAAGTGCAAAACTCAAACCTAAGCTCTCCTTCTCCTGACAGATACC 840
|||||||||||||||||||||| ||||| |||||||||||||||||||| |||| |||||
Sbjct 781 CTCTTACAAGTTTCCAAGTGCAGAACTCTAACCTAAGCTCTCCTTCTCCGGACACATACC 840
Query 841 TCTTAACATATACGTTAGATGGGACATGCTTTGAACAGAGCTTAAACTTGCCTAACCTGA 900
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 841 TCTTAACATATACCTTAGATGGGACATGCTTCGAACAGAGCTTAAACTTGCCTAACCTGA 900
Query 901 AGCTGTGGATCACTGGATCACTTCTAAACCAAGGTTTTGAATTCATCAAGCCATTCACTT 960
||||||||||||||||||||||| |||| ||||||||||||||||||||| |||| ||||
Sbjct 901 AGCTGTGGATCACTGGATCACTTTTAAATCAAGGTTTTGAATTCATCAAGTCATTTACTT 960
Query 961 GATTCCGTAACGCTTGCTCTAACGTGAGTAAAATCCGGTTCTGCA-TCTCATTGATTGTG 1019
||||| |||||||||||||||||||||| ||||||||||||||| | | ||||||||||
Sbjct 961 GATTCTATAACGCTTGCTCTAACGTGAGTCAAATCCGGTTCTGCACTAT-ATTGATTGTG 1019
Query 1020 TACCTTTCTTGCATGTTTCATAACTTTCAGGGATCTAATTT-TAATTCTAGTGATGATGT 1078
|||||||||| ||||||||||||||| ||||| |||||||| || |||||||||||||||
Sbjct 1020 TACCTTTCTTACATGTTTCATAACTTCCAGGGCTCTAATTTCTA-TTCTAGTGATGATGT 1078
Query 1079 AATCGAGATTGTTGATTCTCTCTTGAATAAACACCGTCTTATAGAGTAATTTAGCGACAA 1138
|| |||||||||||||||||| ||||||||||||| | ||||| ||||||||||||||||
Sbjct 1079 AACCGAGATTGTTGATTCTCTATTGAATAAACACCATGTTATATAGTAATTTAGCGACAA 1138
Query 1139 ATTGTATGATTAAATGAAGTAAT 1161
|||||||| ||||||||||||||
Sbjct 1139 ATTGTATGGTTAAATGAAGTAAT 1161
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56977618575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5