BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481695
Length=931
Score E
Sequences producing significant alignments: (Bits) Value
AT2G28140.1 | Symbols: | Protein of unknown function (DUF1635)... 1229 0.0
> AT2G28140.1 | Symbols: | Protein of unknown function (DUF1635)
| chr2:11994966-11996002 FORWARD LENGTH=955
Length=955
Score = 1229 bits (665), Expect = 0.0
Identities = 844/925 (91%), Gaps = 34/925 (4%)
Strand=Plus/Plus
Query 1 TTGTGACCAATCTAAAAGCAAATCAAA-TACCCAAAAATTACCCACTAATACACTTATCA 59
||||||||||||||||||||||||||| ||||| | |||||||||||||| || | |
Sbjct 5 TTGTGACCAATCTAAAAGCAAATCAAATTACCC-ATAATTACCCACTAAT--AC--A-C- 57
Query 60 TAATTCATAAGTCATATATAACTCActctctctccctctc-tcC---TTAGAATTGATTC 115
| | |||||||||||||||||||||||||||||| |||| || ||||||||||| |
Sbjct 58 T-A-TCATAAGTCATATATAACTCACTCTCTCTCTTTCTCACCCTATTTAGAATTGATCC 115
Query 116 ATTGAAGAAAGATGGAGAGACAGCAGCAAAATTATCTACTTAGTTGG-GCTCACCAAAAC 174
|||| || ||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 116 ATTG-AGGAAGATGGAGAGACAGCAGCAAAATTATCTACTTAGTTGGAG-TCACCAAAAC 173
Query 175 CATTGTGGTATAAAGACAATAGAAGATCTTAGACATTCTCTTCTTCACACAACAATGGAG 234
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 174 CAGTGTGGTATAAAGACAATAGAAGAGCTTAGACATTCTCTTCTTCACACAACAATGGAG 233
Query 235 TTAGAGCAAACAAGAATGGTAGCCAGTGAAGAACTCATTGCCAAAGATGACCAGATAATG 294
|||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||
Sbjct 234 TTAGAGCAAACAAGAATGGTGGCCAGCGAAGAACTCATTGCCAAAGACGACCAGATAATG 293
Query 295 CATCTCAAAGATCTTCTCAACAAAGCTATCAAAGAGAAAGATGAAGCACAAGAGAGATAC 354
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 CAGCTCAAAGATCTTCTCAACAAAGCTATCAAAGAGAAAGATGAAGCACAAGAGAGATAC 353
Query 355 AAGAGGCTTCTTCTTGACCAAAACAAT-CTTCTTCAACGCCAAACGGACGAAGAGCAAGA 413
|| ||| ||||||||||||||||| | || ||||||| |||||||||||||||||||||
Sbjct 354 AAAAGGATTCTTCTTGACCAAAAC-TTCCTCCTTCAACACCAAACGGACGAAGAGCAAGA 412
Query 414 CCCAAACATCAATGGGTTTCACTCATCAGACGGTGAAGAAAGCATTGTTTCATCTTTTGA 473
|||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||
Sbjct 413 TCCAAACATCAATGGGTTTCACTCATCGGATGGTGAAGAAAGCATTGTCTCATCTTTTGA 472
Query 474 ACCGCCGATGGAGATCGAGTTAGATTTTCCGGAGATGACATTACCGGAGAAAGGGAAGCT 533
||||||| |||| || ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 473 ACCGCCGGTGGAAATTGAGTTAGATTTTCCGGAGATGACTTTACCGGAGAAAGGGAAGCT 532
Query 534 TTTAAAGGCGGTGGTGAAGGCAGGGCCTCTGCTTCAGACTCTGCTTCTAGCTGGACAGCT 593
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 533 TTTAAAGGCGGTGGTGAAGGCAGGGCCTTTGCTTCAGACTCTACTTCTAGCTGGACAGCT 592
Query 594 TCCACAGTGGCGTCATCCACCACCGA-AGCTTGAGTCCTTTGAAATTCCACCAGTGATTA 652
|||||| |||||||| || ||||| | | ||||||||||||||||||||||| |||||||
Sbjct 593 TCCACAATGGCGTCACCCGCCACC-ACAACTTGAGTCCTTTGAAATTCCACCGGTGATTA 651
Query 653 TTGCTGAAGCATCACCATTGTCACAAGATAGTTGTGGGAATAATCTAAACAGGAAGAGGG 712
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 TTGCTGAAGGATCACCATTGTCACAAGATAGTTGTGGGAATAATCTAAACAGGAAGAGGG 711
Query 713 TTCACTGTGACGAGTCTAATTCCAAAAGAGAGACCAAGTACCAAAGGCTCTTCCCTTGAT 772
|||||||||| | | ||||||||||||||||||||||||||||||| |||||||
Sbjct 712 TTCACTGTGA----T-T----CCAAAAGAGAGACCAAGTACCAAAGGCTCTTGCCTTGAT 762
Query 773 CGTTTATGTACTCACATTTCACTTAATCATCAAGTATGTATCGTTTTTCTTTGTATTCTT 832
|||||||| ||| ||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 763 CGTTTATGGACTTACATTTCACTTAAGCATCAAGTATGTATCGCTTTTCTTTGTATTCTT 822
Query 833 TCCAAGGGGTCATTGCA-GTCCTGCCTTTGGGTTAACCCATTTCTTATTTTGGAGTCTAG 891
|||||||| |||||| | ||| ||| |||||||||||||||||||| |||||||||||
Sbjct 823 TCCAAGGG-TCATTGTATGTCAAGCCCGTGGGTTAACCCATTTCTTATCTTGGAGTCTAG 881
Query 892 ATCCATTATATTTaaa-aaaaaaaG 915
||||| || || ||| ||||||||
Sbjct 882 GTCCATCATGTT-AAACAAAAAAAG 905
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45512137182
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5