BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481696
Length=1678
Score E
Sequences producing significant alignments: (Bits) Value
AT2G28130.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 2350 0.0
> AT2G28130.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: 25
plant structures; EXPRESSED DURING: 13 growth stages; Has
35333 Blast hits to 34131 proteins in 2444 species: Archae -
798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants -
531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
| chr2:11988676-11991617 FORWARD LENGTH=1744
Length=1744
Score = 2350 bits (1272), Expect = 0.0
Identities = 1546/1675 (92%), Gaps = 32/1675 (2%)
Strand=Plus/Plus
Query 1 TTGACTCTTTTAAACACTTGCCCCTT-TTGCGCGCTTCCCAAAGCTGCAAAAG-TTCAAC 58
||| |||||||||||||||| ||||| || ||||||||||||||||||||||| ||||||
Sbjct 25 TTGGCTCTTTTAAACACTTG-CCCTTATT-CGCGCTTCCCAAAGCTGCAAAAGTTTCAAC 82
Query 59 -TTTTAAGGGTTTCGTCTGAAGGAGAAGAAGCTTGAATAAGCCCCAAGTCAGAGAAAGAA 117
||||||||||||||||||||||||||| ||||||||| |||||||||| |||| ||||
Sbjct 83 TTTTTAAGGGTTTCGTCTGAAGGAGAAGGAGCTTGAATCAGCCCCAAGTTAGAG--AGAA 140
Query 118 GTTAACGATGGATTTGGATGGACCTCTTGATTTCGAGAACGAAGATCCTCTGGTTAACCC 177
| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 141 CTCAACGATGGATTTGGATGGACCTCTTGATTTCGAGAACGAAGATCCTCTCGTTAACCC 200
Query 178 TCCACCGACAATTGAAAAAAGGAAGAAAGTTATTGGTTTGGACGATCTTCTATCTGATTT 237
|||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 201 TCCAACGATAATTGAAAAAAGGAAGAAAGTTATTGGTTTGGACGATCTTCTCTCTGATTT 260
Query 238 TTATAAAGAGAAGAGTAAGGTTATAGACAAGGTAAACAAGAAACGCAAAGTCTCTAAGGT 297
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 261 TTACAAAGAGAAGAGTAAGGTTATAGACAAGGTAAACAAGAAACGCAAAGTGTCTAAGGT 320
Query 298 TTATCATTCGGATGATGATGAACAAGGCCAAGTAGATTTGCTTTCTCAATGTGTTGATGA 357
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||
Sbjct 321 TTATCATTCGGATGATGATGAACAAGGTCAAGTAGATAAGCTTTCTCAATGTGTTGTTGA 380
Query 358 GTGTCAGAATCAGATGAATGAGATAGCTGGTGAAGAGGAGAATCAAGATTGGGGATTATC 417
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 381 GTGTCAGAATCAGATGAATGAGATAGCTGATGAAGAGGAGAATCAAGAGTGGGGATTATC 440
Query 418 TTTGTTTGGAGATCAGAAAATTCCAATACCTTCACCGCATGTTGATCTCGATAGTTGCTG 477
| |||||||||||||||||| |||||||||||||| || |||||||||||||||||||||
Sbjct 441 TATGTTTGGAGATCAGAAAACTCCAATACCTTCACTGCTTGTTGATCTCGATAGTTGCTG 500
Query 478 CTTGTTGAAAGAGTTTATGAGTAATCAGTTAAATTTGGTCGTGGGTCTTACCGTAGATGA 537
|||||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||
Sbjct 501 CTTGTTGAAAGAGTTTATGAATAATCAGTTAAATTTGGTGGTGGGTCTTACCGTTGATGA 560
Query 538 AGGAACAACTTTTCTTGAAGGATTGCTGGTTAATGGCTGGCTCACAAGACTGATCTTGAC 597
||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||| ||||
Sbjct 561 AGGAACAACTTTTATTGAAGGCTTGCTGGTTAACGGCTGGCTCACAAGACTGATCATGAC 620
Query 598 TTGTGCG-CGTGTGGAAAAGTTCATATGCAAGTGGACGCTTAATATTTTGTTGTATTCAT 656
||||| | ||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 621 TTGTG-GACGTGTGGAAAAGTTCATTTGCAAGTGGACGCTTAATATATTGTTGTATTCAT 679
Query 657 CTAAAGAAGATCTAAGATCATCTGCTTGTGACTTTTGGTGTTCCATACTGTTATCACAAA 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 680 CTAAAGAAGATCTAAGATCATCTGCTTGTGACTTTTGGTGTTCCATACTGTTATCACAAA 739
Query 717 ACAAGGTTAATGGAGCTCCTGTTGAAATTTACTGGCTGCCTAACTATCAGGAACTTAAAG 776
||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 740 ACAAGGTTAATGGAGCTTCTGTTGAGATTTACTGGCTTCCTAACTATCAGGAACTTAAAG 799
Query 777 AAGCTCTTGAATCATATGGCTTCAGAATTAGTCTGTCACA---AGATGA--T-GAACTAG 830
||||||||||||||||||| |||||||||||||||||||| | | || | |||||||
Sbjct 800 AAGCTCTTGAATCATATGGGTTCAGAATTAGTCTGTCACACTCACAAGACGTTGAACTAG 859
Query 831 CAGACGCGGATTCTGACTCTCAAGGTCCTCCACAGAATATTAGAGCTTGGCTCACACTGG 890
|||| ||||||||||| | ||||||||||||||||||||||||||||||| | ||| |||
Sbjct 860 CAGAAGCGGATTCTGAGTGTCAAGGTCCTCCACAGAATATTAGAGCTTGGTTAACATTGG 919
Query 891 TCACAACTTGTTGTCAAATTAGGTGTAAAAATCCCATTTTTTCCACTTCACAAGTTGAAG 950
| ||||||||||||||| ||||||||||||| || |||||| |||||||||||||||||
Sbjct 920 TTACAACTTGTTGTCAATTTAGGTGTAAAAAACCTATTTTTACCACTTCACAAGTTGAAC 979
Query 951 AGATAGCGGAAATCCTTGTATTGCTGCTATTAGATCGCGGTCTTCTAGGTCTTTCACTTC 1010
||||||| ||||||||||||| | |||| ||||||||| ||||||| ||||||||| |||
Sbjct 980 AGATAGCCGAAATCCTTGTATCGTTGCTCTTAGATCGCAGTCTTCTCGGTCTTTCAATTC 1039
Query 1011 TCTTACAAGAATGCTTAATATCTGTTATTGGATCCTTTAAAGAGGAAGAATGGGTTTCAA 1070
|||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 1040 TCTTACAAGAGTGCTTAATATCTGTTATTGGATCCTTCAAAGAGGAAGAATGGATTTCAA 1099
Query 1071 GCTGCAAGGAAATAGCAAACTCTCTTGCTTCCAGAGTACCTCAAGACATGAATTGTTTGA 1130
|||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1100 GCTGCAAGAAAATAGCTAACTCTCTTGCTTCCAGAGTACCTCAAGACATAAATTGTTTGA 1159
Query 1131 GGGTAGTGGAATCTGTATCAGGTGTTGATGCTCGAAGCAAGCATCTGAGAAGTTCCATCG 1190
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1160 GGGTAGTGGAATCTGTATCAGGTGTTGATGCTCGAAGCAAGCATCTGAGAAGTTCCATTG 1219
Query 1191 CACATCAAATGCTCGTTGTTTTACTTGATCAGAAGGACAGCGACGAAAATTTGTTGAGCT 1250
||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 1220 CACATCAAATGCTTGTTGTTTTACTTGATCATAAGGACAGCGACGAAAATTTGCTGAGCT 1279
Query 1251 CGCTGATGTCTATCAATGTGAAGGAGAAAAGTTGTAACCTATTCAAAACT-TACATTT-C 1308
||||||||||||||||||||||||||| |||||||||||| ||||||| | ||||||| |
Sbjct 1280 CGCTGATGTCTATCAATGTGAAGGAGAGAAGTTGTAACCTTTTCAAAA-TGTACATTTTC 1338
Query 1309 CGTGGTATTGGCGGAGAACTGGCTCTTCTCAAGTACATTGGTAGAAGAAAAGCCGGTACT 1368
| |||||||||| ||||||||||||||||| |||||||||||||||| |||||| |||||
Sbjct 1339 C-TGGTATTGGCTGAGAACTGGCTCTTCTCTAGTACATTGGTAGAAGCAAAGCCTGTACT 1397
Query 1369 GAGGGACATGTGGGCTGTGTTTCTCAGAAACTGTTCTTGTCAGATCAATAGCACCGATCT 1428
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1398 GAGGGACATGTGGGCTGTGTTTCTCAGAAACTGTTCTTGTCAGATCAACAGCACCGATCT 1457
Query 1429 TCGGTCTTATGCATCGAAAGTTCGTACCAAAGCCGCCTATCTTCTTCAAGGATGCAGCAG 1488
||||||||||||||| |||||||| |||| ||||||||||||||||||||| ||||||||
Sbjct 1458 TCGGTCTTATGCATCAAAAGTTCGAACCAGAGCCGCCTATCTTCTTCAAGGTTGCAGCAG 1517
Query 1489 CAATTGAAGGGGTACATCTGAAACTTTAGCAGTAGTTTCGCT-GACATTATTAA--TTTC 1545
|||||||||| ||||| ||||||||| ||||||||||| | | | | | ||||| ||||
Sbjct 1518 CAATTGAAGGAGTACAACTGAAACTTCAGCAGTAGTTTGGTTTG-C-TGATTAAAATTTC 1575
Query 1546 --TAGAGGTTTTACTGTACTTG-TCGAAGTGTTTTTACTACGATTAACCCATAAAAATAA 1602
|| | | | | ||| ||| | ||||| |||||||||| || || |||| |||| ||
Sbjct 1576 GCTA-A--TATAAATGT-CTTTATAGAAGTATTTTTACTACTATAAATCCATTAAAACAA 1631
Query 1603 AATTTATGTCATAACTG-TATTTTATTCTCGCAAAATTCATAGTGACGTAACAAA 1656
|||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 1632 AATTTATGTCTTAACCCCTATTTTATTCTCGCAAAATTCATAGTGACGTAACAAA 1686
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82931300340
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5