BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481698
Length=1547
Score E
Sequences producing significant alignments: (Bits) Value
AT2G28110.1 | Symbols: FRA8, IRX7 | Exostosin family protein | ... 2196 0.0
> AT2G28110.1 | Symbols: FRA8, IRX7 | Exostosin family protein
| chr2:11977944-11979837 REVERSE LENGTH=1623
Length=1623
Score = 2196 bits (1189), Expect = 0.0
Identities = 1434/1550 (93%), Gaps = 25/1550 (2%)
Strand=Plus/Plus
Query 1 TAGTCTTCATCAATCTTTCTCCAACTTCTGCTATTCCTTAATCTCCACTTTATCTCCCAA 60
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 23 TAGTCTTCATCAATCTTTCTCCACCTTCTTCTATTCCTTAATCTCCACTTTATCTCCCAA 82
Query 61 ACCCGAATCCGAAAACTCCTCTTCAACAACTTAAAACCCTTTTAACTAATCCCAACAATC 120
| | ||||||||||||||||| |||||| ||||||| |||||||||||||||||||
Sbjct 83 A--C----CCGAAAACTCCTCTTCACCAACTT-AAACCCTATTAACTAATCCCAACAATC 135
Query 121 AGATGATTCGAATTCAACAACCAACTCCGACCATAAGATTCATTCCGGCA-AAACAAGAA 179
||||| ||||||||||||||||| ||| | ||||||||||||| |||| | |||||||||
Sbjct 136 AGATGTTTCGAATTCAACAACCAGCTCAGGCCATAAGATTCATCCCGG-AGAAACAAGAA 194
Query 180 CCATGATAACACAGAAACAAAGAAGAACAGAGAAAAGTCTCTGTTTAAAACATTACTACA 239
| |||| |||||| ||||| |||||||||||||||| ||||||||| || || |||||||
Sbjct 195 CGATGACAACACATAAACATAGAAGAACAGAGAAAAATCTCTGTTTTAAGCAATACTACA 254
Query 240 AATGGTTCCTCTGTTTTTTCCTTACTCTTTATTTTCTTGCTTCCTTCTTTGTCGACCATG 299
||||| ||||||||||| |||| ||||| |||||| ||||||||||||||||||||||||
Sbjct 255 AATGGATCCTCTGTTTTATCCTCACTCTCTATTTTTTTGCTTCCTTCTTTGTCGACCATG 314
Query 300 ATCAAGATCAAGATCAAGATCAAAGGTCTTCTTCTTCCCGATCAAACCCTCTTCTTACTA 359
||||||||| || || | |||||| ||||| |||||| | |||||||||||
Sbjct 315 ATCAAGATC---AT--AG-----A--TCTTCTACTTCCATATCAAAGCATCTTCTTACTA 362
Query 360 ACTC-TAAACCCAAACTTTTCGCTTCTCGTGCCATGTTTGAATCTAAAATCCATGATCAC 418
|| | |||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 AC-CATAAACCTAAGCTTTTCGCTTCTCGTGCCATGTTTGAATCTAAAATCCATGATCAC 421
Query 419 AAACTTGGGTTTGCCCCTCAACGTCCCAACAT-AAGAACAGATGTATTCAACAATTTGAA 477
|||||||||||| || |||||| || ||||| || |||||| |||||||||||||||||
Sbjct 422 AAACTTGGGTTTACCTCTCAACAACCTAACATCAA-AACAGACGTATTCAACAATTTGAA 480
Query 478 AATCTACGTCTATGACTTGCCGTCAAAGTTCAACAAAGACTGGTTAGCCAATGATAGGTG 537
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||
Sbjct 481 AATCTACGTCTATGACTTACCTTCAAAGTTCAACAAAGACTGGTTAGCCAATGATAGATG 540
Query 538 TAGCAACCACCTCTTTGCCGCGGAGGTGGCTCTCCACAAGGCGTTTCTCAGCCTCGAAGG 597
| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 541 CACCAACCACCTCTTTGCCGCGGAAGTGGCTCTCCATAAGGCGTTTCTCAGCCTCGAAGG 600
Query 598 AGACATACGGACAGAAGATCCATACGAAGCCGATTTCTTCTTTGTTCCTGTCTATGTCTC 657
||| || |||| |||||||| || |||||||||||||||||||| ||||||||||||||
Sbjct 601 AGATGTAAGGACGGAAGATCCGTATGAAGCCGATTTCTTCTTTGTCCCTGTCTATGTCTC 660
Query 658 TTGCAACTTCAGCACCATCAATGGCTTTCCAGCTATTGGTCACGCGCGAACACTCATCAA 717
|||||||||||||||||| |||||||||||||| ||||| || || ||| ||||||||||
Sbjct 661 TTGCAACTTCAGCACCATTAATGGCTTTCCAGCGATTGGCCATGCACGATCACTCATCAA 720
Query 718 TGACGCGATTAAGTTCGTCTCGACTCAATACCCGTTTTGGAATCGAAATAATGGCTCTGA 777
||||||||| ||| ||||||||||||||||||| |||||||| |||| | |||||||||
Sbjct 721 TGACGCGATAAAGCTCGTCTCGACTCAATACCCTTTTTGGAACCGAACCAGTGGCTCTGA 780
Query 778 CCACGTCTTCACCGCCACACATGACTTTGGCTCTTGCTTCCACACCATGGAGGATAGAGC 837
|| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 781 TCATGTCTTCACGGCCACACACGACTTTGGCTCTTGCTTCCACACCATGGAGGATAGAGC 840
Query 838 AATTGCTGATGGAGTACCAAAGATTTTGAGAAACTCTATAGTTTTGCAAACATTTGGTGT 897
||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 841 TATTGCTGATGGAGTACCAATTTTTTTGAGAAACTCTATAATTTTGCAAACATTTGGTGT 900
Query 898 TACTTTTAACCATCCATGCCAAGAGGTAGAGAACGTGGTGATACCACCGTACATCTCACC 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 TACTTTTAACCATCCATGCCAAGAGGTAGAGAACGTGGTGATACCACCGTACATCTCACC 960
Query 958 GGAAAGTTTACACAAGACTCTAAAGAATATTCCGGTAACTAAAGAACGAGACATTTGGGC 1017
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 961 GGAAAGTTTACACAAGACTCAAAAGAATATTCCGGTAACTAAAGAACGAGACATTTGGGT 1020
Query 1018 TTTTTTCCGCGGCAAGATGGAACTTCATCCCAAAAACATCAGTGGACGCTTCTATAGCAA 1077
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 TTTTTTCCGTGGCAAGATGGAACTTCATCCCAAAAACATCAGTGGACGCTTCTATAGCAA 1080
Query 1078 GCGAGTACGGACGAATATATGGCGAAGTTACGGTGGTGACCGGAGGTTTTATCTTCAACG 1137
||| ||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1081 GCGTGTAAGGACGAATATATGGCGGAGTTACGGTGGTGACCGGAGGTTTTATCTCCAACG 1140
Query 1138 GCAACGATTTTCCGGTTACCAGTCAGAAATAGCTCGTTCTGTTTTCTGTTTGTGTCCTCT 1197
|||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1141 GCAAAGATTTGCCGGTTACCAGTCAGAAATAGCTCGTTCTGTTTTCTGTTTATGTCCTCT 1200
Query 1198 CGGGTGGGCACCGTGGAGCCCAAGACTTGTTGAATCGGTGGCTCTTGGCTGTGTACCAGT 1257
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1201 CGGGTGGGCACCGTGGAGCCCAAGACTTGTTGAATCGGTGGCTCTTGGCTGTGTTCCGGT 1260
Query 1258 GATTATAGCCGATGGGATCCGTTTGCCGTTCCCTTCCGCCGTGCGTTGGCCGGATATTTC 1317
|||||||||||| ||||| |||||||||||||||||| |||| |||||||||||||||||
Sbjct 1261 GATTATAGCCGACGGGATTCGTTTGCCGTTCCCTTCCACCGTACGTTGGCCGGATATTTC 1320
Query 1318 GCTCACGGTGGCAGAGAGAGACGTTGGAAAGCTAGGGGATATTTTGGAACACGTGGTGGC 1377
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1321 GCTCACGGTGGCGGAGAGAGACGTTGGAAAGCTAGGGGATATTTTGGAACACGTGGCGGC 1380
Query 1378 AACTAATTTGTCAGTCATACAGAGAAACTTGGAGGATCCGTCTGTTAGGCGGGCCCTTAT 1437
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 TACTAATTTGTCAGTCATACAGAGAAACTTGGAGGATCCGTCTGTTAGGCGGGCCCTTAT 1440
Query 1438 GTTTAATGTTCCTTCAAGAGAGGGAGATGCCACGTGGCAAGTTTTGGACGCTTTGTCAAA 1497
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1441 GTTTAATGTTCCTTCAAGAGAGGGAGATGCCACGTGGCAAGTTTTGGAGGCTTTGTCAAA 1500
Query 1498 GAAATTGAATAGGTCTGTTAGAAGGTCAAACTCTTTCTTGTAAACCAATA 1547
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1501 GAAATTGAATAGGTCTGTTAGAAGGTCAAACTCTTTCTTGTAAACCAATA 1550
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76355028945
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5