BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481700
Length=1585
Score E
Sequences producing significant alignments: (Bits) Value
AT2G28100.1 | Symbols: ATFUC1, FUC1 | alpha-L-fucosidase 1 | ch... 2326 0.0
AT2G28105.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Nucleic a... 351 9e-96
> AT2G28100.1 | Symbols: ATFUC1, FUC1 | alpha-L-fucosidase 1 |
chr2:11974663-11976600 FORWARD LENGTH=1772
Length=1772
Score = 2326 bits (1259), Expect = 0.0
Identities = 1491/1601 (93%), Gaps = 23/1601 (1%)
Strand=Plus/Plus
Query 1 ACTAAAAT-TATTCAAGACCCATGAActctcaaatcactc--ttc-tcttcttcttctca 56
|||||||| | ||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 121 ACTAAAATCT-TTCAAGACCCATGAACTCTCAAATCACTCTTTTCTTCTTCTTCTTCTCA 179
Query 57 atcctctgtctctcccaaatctcaaattcatca-c-ct-ctAAAACCACACCCACT-TCC 112
||||||| |||||||||||||||||||||||| | || ||||||||||||||| | |||
Sbjct 180 ATCCTCTCCCTCTCCCAAATCTCAAATTCATCATCACTACTAAAACCACACCCA-TGTCC 238
Query 113 AATTTTACCCCTCCCATCCTCCCAACAGCTCCAATGGCAACTCGGATCCATGGCCATGTT 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 AATTTTACCCCTCCCATCCTCCCAACAGCTCCAATGGCAACTCGGATCCATGGCCATGTT 298
Query 173 CCTCCATTTCGGACCAAACACTTTCACCAACTCCGAATGGGGCACCGGAAAAGCCAACCC 232
||||||||| ||||| |||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 299 CCTCCATTTTGGACCCAACACTTTCACCGACTCCGAATGGGGCACCGGAAAAGCTAACCC 358
Query 233 ATCCGTTTTCAACCCGACCCGTCTCAACGCAAGTCAATGGGTCCAAATCGCTAAAGACTC 292
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 359 ATCCATTTTCAACCCGACCCATCTCAACGCAAGTCAATGGGTCCAAATCGCTAAAGACTC 418
Query 293 AGGCTTTTCCCGCGTTATCCTCACAGCTAAGCACCACGACGGATTCTGTCTCTGGCCTAG 352
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 419 AGGCTTTTCCCGCGTTATCCTCACAGCTAAGCACCATGATGGATTCTGTCTCTGGCCTAG 478
Query 353 CGAATACACAGATTACTCCGTCAAATCGAGCTCA-TGGAGAAACGGAACCGGCGATGTAG 411
||||||||| ||||||||||||||||| ||| || |||||||||||| ||||||||||||
Sbjct 479 CGAATACACTGATTACTCCGTCAAATCTAGC-CAATGGAGAAACGGAGCCGGCGATGTAG 537
Query 412 TGGCGGAGCTAGCTGCTGCGGCGGCGGAAGCTGGAATTGGACTTGGTCTTTACCTTTCTC 471
|||| || |||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 538 TGGCTGAACTAGCTTCTGCGGCAAAGGAAGCTGGAATTGGACTTGGTCTTTACCTTTCTC 597
Query 472 CATGGGATCGTCATGATCAGAGTTATGGCAAGACATTGGAGTATAACGAGTTTTATCTGA 531
|||||||||| ||||| ||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 598 CATGGGATCGACATGAACAGTGTTATGGCAAGACATTGGAGTATAACGAGTTCTATCTGA 657
Query 532 GTCAAATGACTGAGTTATTAACAAAGTATGGAGAGATTAAAGAAGTTTGGTTAGATGGAG 591
|||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 658 GTCAAATGACCGAGTTACTAACAAAGTATGGAGAGATTAAGGAAGTTTGGTTAGATGGAG 717
Query 592 CTAAAGGAGAAGGAGAGAAAGATATGGAGTATTTCTTTGATACTTGGTTTAGTTTGATCC 651
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 718 CTAAAGGAGACGGAGAGAAAGATATGGAATATTTCTTTGATACTTGGTTTAGTTTGATCC 777
Query 652 ATCAGCTTCAGCCTAAAGCTGTTATATTCTCCGACGCCGGTCCTGATGTCCGGTGGATTG 711
||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||
Sbjct 778 ATCAGCTTCAGCCTAAAGCTGTTATATTCTCTGACGCTGGTCCTGATGTCAGGTGGATTG 837
Query 712 GTGACGAAGCTGGACTCGCTGGGTCTACTTGCTGGTCACTCTTTAACCGAACCAATGCCA 771
|||| |||||||| || ||||| |||||||||||||||||||||||| |||||||||| |
Sbjct 838 GTGATGAAGCTGGTCTAGCTGGCTCTACTTGCTGGTCACTCTTTAACAGAACCAATGCAA 897
Query 772 AGATTGGTGACACTGATCCTTTGTATTCTCAGGAAGGTGATAAATTTGGGCAAGATTGGG 831
|||||||||||||||| |||| ||||||||| ||||||||| | ||||||||||||||
Sbjct 898 AGATTGGTGACACTGAGCCTTCGTATTCTCAAGAAGGTGATGGCTATGGGCAAGATTGGG 957
Query 832 TACCGGCGGAATGTGATGTATCGATTCGACCTGGTTGGTTTTGGCATGCGTCGGAGTCGC 891
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 958 TACCAGCGGAATGTGATGTATCGATTCGACCCGGTTGGTTTTGGCATGCGTCGGAGTCGC 1017
Query 892 CTAAACCGGCTGTTAAGCTTTTGGATATATACTATAACTCGGTTGGAAGGAACTGTCTCT 951
|||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1018 CTAAACCGGCTGTTCAGCTTTTGGATATATACTATAACTCAGTTGGAAGAAACTGTCTCT 1077
Query 952 TCTTGCTTAATGTACCTCCTAATTCTTCAGGATTGATATCTGAACAAGACATCAAGGTTC 1011
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1078 TCTTGCTTAATGTACCTCCTAATTCTTCAGGATTGATATCTGAGCAAGACATTAAGGTTC 1137
Query 1012 TTGAGGAGTTCCGCGAAATGACACACACT--ATTTTCTCGAATAATCTCGCCCGCAAAGC 1069
|||| |||||| ||||||||| | | ||| ||||||||||| ||||||||||| |||||
Sbjct 1138 TTGAAGAGTTCAGCGAAATGA-AGA-ACTCCATTTTCTCGAACAATCTCGCCCGTAAAGC 1195
Query 1070 ATTGGTTAACTCGAGCAGTATTCGTGGCGGTCAAAGTTCACAGTTTGGTCCTAAGAATGT 1129
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1196 ATTCGTTAACTCGAGCAGTATTCGTGGCGATCAAAGTTCACAGTTTGGTCCTAAGAATGT 1255
Query 1130 TTTGGAAGAAGGATTAGACAAGTACTGGGCGCCAGAGGA-AAGTCAAAAGGAATGGGAGT 1188
|||||||||||||||||||||||||||||||||||| || || |||||| ||||||| ||
Sbjct 1256 TTTGGAAGAAGGATTAGACAAGTACTGGGCGCCAGAAGAGAA-TCAAAACGAATGGGTGT 1314
Query 1189 TATACTTAGAGTTTAAAGATTCGGTTAGTTTCAATGTGTTGGAAATTCGAGAACCGATCC 1248
||||||||||||||||||||| |||||| |||||||||||||| ||||||||||| ||||
Sbjct 1315 TATACTTAGAGTTTAAAGATTTGGTTAGCTTCAATGTGTTGGAGATTCGAGAACCAATCC 1374
Query 1249 AAATGGGTCAACGGATCGCGTCTTTCCATCTCGAGACGCGGAAGACTGGAAGCGGAAAAT 1308
| ||||||||| ||||||| ||||||||||||||||| ||||||||||||||||| | |
Sbjct 1375 ATATGGGTCAAAGGATCGCATCTTTCCATCTCGAGACACGGAAGACTGGAAGCGGTGAGT 1434
Query 1309 GGGAGAGAGTTGTGAGCGGCACAACAGTCGGGAACAAAAGGCTTTTACGATTTCTGAA-G 1367
|||||||||||||||||||||| || || || ||||||||||||||||| |||||||| |
Sbjct 1435 GGGAGAGAGTTGTGAGCGGCACGACGGTTGGTAACAAAAGGCTTTTACGGTTTCTGAATG 1494
Query 1368 --GTTGAGTCGCGGTCACTAAAGCTTGTGGTGGACAAAGCGAGGACCGACCCACTTATAT 1425
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1495 TTGTTGAGTCGCGGTCTCTAAAGCTTGTGGTGGACAAAGCGAGGACCGACCCACTTATAT 1554
Query 1426 CGTACCTTGGAATCTACATGGACAAGTTTTCGGTTTCGAGTCGAAACACAACAAAGATAA 1485
||||||| ||| |||||||||| |||||||||| ||| ||| ||||||||||||||||||
Sbjct 1555 CGTACCTCGGACTCTACATGGATAAGTTTTCGGGTTCTAGTAGAAACACAACAAAGATAA 1614
Query 1486 CAATCACAAGGACACTAAAGGAAGAGCAACAACTACATGATTTGTAAGAAATAACTCTCA 1545
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1615 CAATCACAAGGACACTAAAGGAAGAGCAGCAACTACATGATTTGTAAGAAATAACTCTCA 1674
Query 1546 AGGATTCACCACATAAGTGTTTGGCT-TTCTTGAGAATATC 1585
|||||||| |||||||||||| || | ||||||||||||||
Sbjct 1675 AGGATTCATCACATAAGTGTTAGG-TATTCTTGAGAATATC 1714
> AT2G28105.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Nucleic
acid-binding, OB-fold-like (InterPro:IPR016027), Replication
factor A, C-terminal (InterPro:IPR013955); Has 20 Blast hits
to 20 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa
- 2; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr2:11976303-11977913 FORWARD
LENGTH=1003
Length=1003
Score = 351 bits (190), Expect = 9e-96
Identities = 225/241 (93%), Gaps = 5/241 (2%)
Strand=Plus/Plus
Query 1349 GCTTTTACGATTTCTGAA-G--GTTGAGTCGCGGTCACTAAAGCTTGTGGTGGACAAAGC 1405
||||||||| |||||||| | |||||||||||||| |||||||||||||||||||||||
Sbjct 1 GCTTTTACGGTTTCTGAATGTTGTTGAGTCGCGGTCTCTAAAGCTTGTGGTGGACAAAGC 60
Query 1406 GAGGACCGACCCACTTATATCGTACCTTGGAATCTACATGGACAAGTTTTCGGTTTCGAG 1465
||||||||||||||||||||||||||| ||| |||||||||| |||||||||| ||| ||
Sbjct 61 GAGGACCGACCCACTTATATCGTACCTCGGACTCTACATGGATAAGTTTTCGGGTTCTAG 120
Query 1466 TCGAAACACAACAAAGATAACAATCACAAGGACACTAAAGGAAGAGCAACAACTACATGA 1525
| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 121 TAGAAACACAACAAAGATAACAATCACAAGGACACTAAAGGAAGAGCAGCAACTACATGA 180
Query 1526 TTTGTAAGAAATAACTCTCAAGGATTCACCACATAAGTGTTTGGCT-TTCTTGAGAATAT 1584
|||||||||||||||||||||||||||| |||||||||||| || | |||||||||||||
Sbjct 181 TTTGTAAGAAATAACTCTCAAGGATTCATCACATAAGTGTTAGG-TATTCTTGAGAATAT 239
Query 1585 C 1585
|
Sbjct 240 C 240
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78262649655
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5