BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481701
Length=921
Score E
Sequences producing significant alignments: (Bits) Value
AT2G28090.1 | Symbols: | Heavy metal transport/detoxification ... 1085 0.0
> AT2G28090.1 | Symbols: | Heavy metal transport/detoxification
superfamily protein | chr2:11972140-11974007 REVERSE LENGTH=996
Length=996
Score = 1085 bits (587), Expect = 0.0
Identities = 836/948 (88%), Gaps = 50/948 (5%)
Strand=Plus/Plus
Query 13 GTGTGTGAATGTTACCACGGAGAT-T--CGGAGGAGAAGAAAAAGAAACAGAACAGTACG 69
|||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||
Sbjct 16 GTGTGTGAATGTTACCACGGAGATGTGGAGGAGGAGAAGAAAAAGAAACAGAACAATACG 75
Query 70 CCGACGACTG-TCACCGTCGTTCTTAAGGTTGATTTTCACTGTGACGGTTGTATCGCTCG 128
|| || | | ||| ||||||||||||| ||||||||||||||||||| ||||||||| |
Sbjct 76 ACGTCGCCGGTTCA-CGTCGTTCTTAAGATTGATTTTCACTGTGACGGCTGTATCGCTAG 134
Query 129 AATCGTTCGATTATCTCGTCGTTTGGAAGGAGTTGAAACAGTGAGAGCAGATCCTGTTTC 188
||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 135 AATCGTTCGCTTATCTCGTCGTTTAGAAGGAGTTGAAACAGTGAGAGCAGATCCTGATTC 194
Query 189 GAACAAGCTGACTCTGATTGGGTTTATCATGGATCCTGTGAAGGTTGCTGAGAAACTTCA 248
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 195 GAACAAGCTGACTCTGATTGGGTTTATCATGGATCCAGTGAAGATTGCTGAGAAACTTCA 254
Query 249 GAAGAAGAGCAAGAAGAAAGTGGAGCTCATATCTCCTAAACCAAACAAAGATACCAAAGA 308
||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||
Sbjct 255 GAAGAAGAGCAAGAAGAAAGTGGAGCTGATATCTCCTAAACCAAAGAAAGACACCAAAGA 314
Query 309 GAAGAATGAGAAAAAAGCTAATGATAAGACTCAGACTGTGGTTGCTGTGACCACTGTGGT 368
||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 315 GAACAATGAGAAAAAGGCTAATGATAAGACTCAGACTGTGGTTGCTGTGACCACAGTGGT 374
Query 369 ACTGAAACTGAATTGCTCATGTGATGGTTGCATCAAGAGGATTTACAAGACTATCTCTAA 428
||||| |||||||||| |||||||||||||||||||| ||| | ||| || ||||||
Sbjct 375 GTTGAAAGTGAATTGCTCTTGTGATGGTTGCATCAAGAGAATTCAAAAGGCTGTCTCTAC 434
Query 429 AACCAAAGGTGTGTATCAAGTCAAAATGGACAAAGAGAAGGAAACGGTAACAGTAATGGG 488
||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 435 GACCAAGGGAGTGTATCAAGTCAAAATGGACAAAGAGAAGGAAACGGTAACAGTCATGGG 494
Query 489 AACGATGGATGTTAAATCTGTGACTGAGAATCTGAAACGTAAGCTGAAGAAAACAGTCCA 548
||| ||||| | || |||||||| || ||| ||||||| |||||||||||||| |||||
Sbjct 495 AACAATGGACATCAAGTCTGTGACAGATAATTTGAAACGCAAGCTGAAGAAAACCGTCCA 554
Query 549 GGTCGTGCCTGagaagaagaagaagaa-agaTA-AAG-ACAATGCAGAGGGAATCACCAA 605
||||||||||||||||||||||||||| | | | ||| |||||||||||| || ||||||
Sbjct 555 GGTCGTGCCTGAGAAGAAGAAGAAGAAGAAAGACAAGGACAATGCAGAGGTAAACACCAA 614
Query 606 AGTCGGGTCTCCGGGTCAACCTG-ATTATGGATGCAATCATGGGCTTGGGCCTTACAGGT 664
|||||||||||| ||||||||| | ||||||||| ||||||| |||||||||||||||
Sbjct 615 AGTCGGGTCTCCTTGTCAACCTGGAA-ATGGATGCACTCATGGGATTGGGCCTTACAGGT 673
Query 665 TCATGGAAGGCCCAATGATTGGGTTTTTCAGTGAGGAGGATCAGAGCTTTTGCAGCGTTA 724
|||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||
Sbjct 674 TCATGGAAGGCCCAATGACTGGGTTTTTCAGTGAGGAAGATCAGAGCTATTGCAGCGTTA 733
Query 725 TGTGAGTTTCGAGGTGACAAA--A-----A--------CA--TATATA--CTAGGAGGTA 765
||||||||||||||||||||| | | || |||||| ||||||||||
Sbjct 734 TGTGAGTTTCGAGGTGACAAAGCATTTGGAGTTTATTACAAATATATATACTAGGAGGTA 793
Query 766 AATAAACTAAATAGGGAACaaaaaagaaaaa-GAAGAAG---TAAAGTCTGACGGATATT 821
|||||||||| |||| |||| |||||||||| ||||||| |||||||||| ||||||
Sbjct 794 AATAAACTAA-TAGGAAACAGAAAAGAAAAAAGAAGAAGAAGTAAAGTCTGAAGGATATA 852
Query 822 TTGTGTGATGGTCTGTGTCACATGAGAGTA--A------TACACTAGTATTTTCTATTTT 873
||||| ||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 853 TTGTG--ATGGTCTGTGTCACATGAGAGTAGTAAAAAAATACACTAGTATTTTCTATTTT 910
Query 874 GAGAAATATTGCAGTGACAGTACGCTTTTGTGGAGAGGATCCACTTTT 921
|||| |||| ||| | ||||| |||||||||||||||||||||||
Sbjct 911 GAGAGATAT--CAG--A--GTACGTTTTTGTGGAGAGGATCCACTTTT 952
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45009795712
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5