BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg481702

Length=500
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G28085.1 | Symbols:  | SAUR-like auxin-responsive protein fa...   713    0.0  


> AT2G28085.1 | Symbols:  | SAUR-like auxin-responsive protein 
family  | chr2:11968120-11968620 REVERSE LENGTH=501
Length=501

 Score =  713 bits (386),  Expect = 0.0
 Identities = 465/503 (92%), Gaps = 5/503 (1%)
 Strand=Plus/Plus

Query  1    ATATACTTTTCAAAGAAACCCAAAGCCCCCACaaaaaaaGGAAAAGATCACTTAATATTT  60
            |||||||||||||| ||||  |||    || |||||||||||||| ||||||| || |||
Sbjct  1    ATATACTTTTCAAACAAACAAAAAAAAACCTCAAAAAAAGGAAAATATCACTTTATCTTT  60

Query  61   TAGCATGACCAGGCAAAGAATGATTACAGTTGAGTCGCCGAAGAAGAAAATGGGTGGAAT  120
            ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  61   TAGCATGACGAGGCAAAGAATGATTACAATTGAGTCGCCGAAGAAGAAAATGGGTGGAAT  120

Query  121  TGTGAAGCTCAAGAATGTTGTAGAGAGGTTGGTGCAAATCAAAGGCTTTTCCTCGGCCAA  180
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  121  TGTGAAGCTCAAGAATGTTGTAGAGAGGCTGGTGCAAATCAAAGGCTTTTCCTCGGCCAA  180

Query  181  GAAACCGTGTTCC-GAAGAATATAGCCGTGATTGTGTCCCAAAAGACGTGAAGGAAGGTC  239
            |||||||||| || ||||||||  |||| |||||||||||||||||||| ||||||||||
Sbjct  181  GAAACCGTGT-CCTGAAGAATACGGCCGAGATTGTGTCCCAAAAGACGTAAAGGAAGGTC  239

Query  240  ATTTCGCGGTGATAGCCGTTGATGGGTATCATGAGCCTACACAAAGATTCGTTGTCCCAT  299
            | |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct  240  ACTTCGCGGTGATAGCTGTTGATGGGTATCATGAGCCTACACAAAGATTTGTTGTCCCAT  299

Query  300  TGATGTTTCTAGAACACCCTATGTTCCGGAAGCTTTTGGAACAAGCAGAGGAGGAATACG  359
            |||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||
Sbjct  300  TGATGTTTCTAGAACACCCTATGTTCCGTAAGCTTCTAGAACAAGCAGAGGAGGAATACG  359

Query  360  GGTTCTATCATGACGGAGC-CTTGATGGTACCTTGCCGGCCAAGCCACCTACGAATGATA  418
            |||||||||| || ||||| ||  ||||||||||||||||||||||||||||| ||||||
Sbjct  360  GGTTCTATCACGATGGAGCGCTA-ATGGTACCTTGCCGGCCAAGCCACCTACGGATGATA  418

Query  419  TTGACCGAGCAATGGTGTTAGAATTTATGCTGTAGTTA-TAACTGTTCTACTTCATATTA  477
            |||||||||||||||||||||||||||||||||||||| | |||| || || ||||||||
Sbjct  419  TTGACCGAGCAATGGTGTTAGAATTTATGCTGTAGTTAATTACTGATCAACGTCATATTA  478

Query  478  CATAATAAAACCGAATTATTCAC  500
            |||||||| ||||||||||||||
Sbjct  479  CATAATAATACCGAATTATTCAC  501



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23861219825


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5