BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481703
Length=1512
Score E
Sequences producing significant alignments: (Bits) Value
AT2G28080.1 | Symbols: | UDP-Glycosyltransferase superfamily p... 2501 0.0
> AT2G28080.1 | Symbols: | UDP-Glycosyltransferase superfamily
protein | chr2:11960571-11963293 REVERSE LENGTH=1718
Length=1718
Score = 2501 bits (1354), Expect = 0.0
Identities = 1464/1517 (97%), Gaps = 7/1517 (0%)
Strand=Plus/Plus
Query 1 AAAAAATATAACCTTTAAA-TTTCTCTCATTTCTTCATCTTCCTCTCCACAAAACCCAAG 59
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 4 AAAAAATATAACCTTTAAATTTTCTCTCATTTCTTCATCTTCCTCTCCACAAAACCC-AT 62
Query 60 TTTAATGGCGGACGTTAAAAACCCTaaaaaaaaTCATCATGGTCATCATCATCTTCATGC 119
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 63 TTTAATGGCGGACGTTAGAAACCCTACAAAAAATCATCATGGTCATCATCATCTTCATGC 122
Query 120 TCTCTTGATCCCATATCCATTTCAAGGACATGTAAACCCATTTGTACACTTAGCCATCAA 179
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 123 TCTCTTGATCCCATATCCATTTCAAGGGCATGTAAACCCATTTGTACACTTAGCCATCAA 182
Query 180 GCTCGCGTCACAGGGGATCACCGTGACTTTCGTCAACACTCATTACATCCACCATCAGAT 239
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 183 GCTCGCGTCACAGGGGATCACCGTCACTTTCGTCAACACTCATTACATCCACCACCAGAT 242
Query 240 CACAAACGGCTCCGATGGAGATATTTTCGCCGGAGTTAGGTCAGAGTCTGGCCTTGACAT 299
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 243 CACAAACGGCTCCGATGGAGATATTTTCGCTGGAGTTAGGTCAGAGTCTGGCCTTGACAT 302
Query 300 AAGGTACGCGACGGTTTCCGATGGTTTACCGGTCGGATTTGACCGGTCTTTGAACCATGA 359
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 303 AAGGTACGCGACGGTTTCCGATGGTTTACCGGTCGGATTTGACCGGTCGTTGAACCATGA 362
Query 360 CACGTACCAATCGTCGTTGCTT-CACGTGTTCTATGCGCATGTGGAAGAGCTTGTGGCGA 418
|||||||||||||||| || || |||||||||||||||||||||||||||||||||||||
Sbjct 363 CACGTACCAATCGTCGCTG-TTGCACGTGTTCTATGCGCATGTGGAAGAGCTTGTGGCGA 421
Query 419 GTCTTGTCGGAGGAGACGGCGGTGTGAATGTTATGATCGCCGATACATTCTTTGTTTGGC 478
||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 422 GTCTTGTTGGAGGAGACGGCGGTGTGAATGTGATGATCGCCGACACATTCTTTGTTTGGC 481
Query 479 CGTCGGTGGTGGCTAGGAAGTTTGGTTTGGTTTGTGTCTCGTTTTGGACCGAAGCTGCTT 538
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 CGTCTGTGGTGGCTAGGAAGTTTGGTTTGGTTTGTGTCTCGTTTTGGACCGAAGCTGCTT 541
Query 539 TAGTTTTTTCACTTTATTACCATATGGATCTGCTTCGGATTCATGGCCATTTTGGTGCTC 598
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 TAGTATTTTCACTTTATTACCATATGGATCTGCTTCGGATTCATGGCCATTTTGGTGCTC 601
Query 599 AAGAAACCCGCCGCGATCTAATCGACTACATTCCCGGAGTCGCCGCAATAAACCCAAAAG 658
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 602 AAGAAACCCGCAGCGATCTAATCGACTACATTCCCGGAGTCGCCGCAATTAACCCAAAAG 661
Query 659 ACACGGCGTCGTATCTTCAAGAAACAGACACTTCATCAGTAGTTCATCAAATCATCTTCA 718
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 662 ACACGGCGTCGTATCTTCAAGAAACCGACACGTCATCAGTAGTTCATCAAATCATCTTCA 721
Query 719 AAGCATTCGAAGACGTGAAAAAAGTCGATTTCGTTCTCTGCAACACAATACAACAATTCG 778
||||||||||||||||||||||||||||||| || |||||||||||||| || |||||||
Sbjct 722 AAGCATTCGAAGACGTGAAAAAAGTCGATTTTGTACTCTGCAACACAATTCAGCAATTCG 781
Query 779 AAGACAAAACAATCAAAGCCCTTAATACAAAAATCCCTTTTTACGCCATCGGACCAATCA 838
|||||||||||||||||||||| || ||||||||||| |||||||| |||||||||||||
Sbjct 782 AAGACAAAACAATCAAAGCCCTAAACACAAAAATCCCATTTTACGCAATCGGACCAATCA 841
Query 839 TACCATTCAATAACCAAACCGGTTCAGTCACAACATCACTCTGGTCTGAATCAGATTGTA 898
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 842 TACCATTCAATAACCAAACCGGTTCAGTCACAACCTCACTCTGGTCTGAATCAGATTGTA 901
Query 899 CACAATGGCTCAACACTAAACCAAAAAGCTCAGTACTTTATGTCTCCTTTGGTAGTTACG 958
||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 902 CACAATGGCTCAACACTAAACCAAAAAGCTCCGTACTTTATATCTCCTTTGGTAGTTACG 961
Query 959 CTCACGTCACAAAGAAAGATCTTGTCGAAATCGCTCACGGGATTTTGTTGAGTAAAGTAA 1018
|||| ||||||||||| |||||||| || || |||||||||||||||||||||||||| |
Sbjct 962 CTCATGTCACAAAGAAGGATCTTGTTGAGATAGCTCACGGGATTTTGTTGAGTAAAGTTA 1021
Query 1019 ATTTCGTTTGGGTGGTGAGACCAGACATTGTTAGTTCAGACGAAACCAATCCATTACGAG 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1022 ATTTCGTTTGGGTGGTGAGACCAGACATTGTTAGTTCAGACGAAACCAATCCATTACCAG 1081
Query 1079 AAGGTTTTGAGACAGAAGCTGGAGATCGTGGGATTGTAATACCATGGTGTTGTCAAATGA 1138
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1082 AAGGGTTTGAAACAGAAGCTGGAGATCGTGGGATTGTAATACCATGGTGTTGTCAAATGA 1141
Query 1139 CGGTTTTGTCACATGAGAGTGTTGGTGGGTTTTTGACACATTGTGGTTGGAATTCGATAT 1198
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1142 CGGTTTTGTCACATGAGAGTGTTGGTGGGTTTTTGACACATTGTGGTTGGAACTCGATAT 1201
Query 1199 TGGAGACGATTTGGTGTGAGGTACCAGTTTTGTGTTTTCCATTGTTGACTGATCAGGTTA 1258
|||||||||||||||||||||| || || |||||||||||||||||||||||||||||||
Sbjct 1202 TGGAGACGATTTGGTGTGAGGTTCCTGTGTTGTGTTTTCCATTGTTGACTGATCAGGTTA 1261
Query 1259 CGAATAGGAAGCTTGTGGTTGATGATTGGGAGATTGGGATTAATCTTTGTGAAGATAAGA 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1262 CGAATAGGAAGCTTGTGGTTGATGATTGGGAGATTGGGATTAATCTTTGTGAAGATAAGA 1321
Query 1319 GTGATTTTGGGAGAGATGAAGTTGGGAGGAATATTAACCGTTTGATGTGTGGTGTTTCGA 1378
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1322 GTGATTTTGGTAGAGATGAAGTTGGGAGGAATATTAACCGTTTGATGTGTGGTGTTTCGA 1381
Query 1379 AGGAGAAGATCGGACGGGTTAAAATGAGTTTGGAAGGTGCGGTGAGAAACAGTGGATCTT 1438
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1382 AAGAGAAGATCGGACGGGTTAAAATGAGTTTGGAAGGTGCGGTGAGAAACAGTGGATCTT 1441
Query 1439 CT--G-AGATGAATTTGGGTTTGTTTATTGATGGACTTTTGTCTAAGGTTGGTTTATCAA 1495
|| | |||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1442 CTTCGGAGATGAATTTAGGTTTGTTTATTGATGGACTTTTGTCTAAGGTTGGTTTATCTA 1501
Query 1496 ATGGGAAAGCTTAAATT 1512
|||||||||||||||||
Sbjct 1502 ATGGGAAAGCTTAAATT 1518
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74598009870
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5