BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481704
Length=2193
Score E
Sequences producing significant alignments: (Bits) Value
AT2G28070.1 | Symbols: | ABC-2 type transporter family protein... 3591 0.0
> AT2G28070.1 | Symbols: | ABC-2 type transporter family protein
| chr2:11956432-11959782 FORWARD LENGTH=2193
Length=2193
Score = 3591 bits (1944), Expect = 0.0
Identities = 2115/2198 (96%), Gaps = 10/2198 (0%)
Strand=Plus/Plus
Query 1 ATGGAGGAGATACAGTCTCAACCGGATTTGTACCGTTCGTCTTCGTCTTCTGCAAGTAGT 60
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGGAGATACAGTCTCAATCGGATTTATACCGTTCGTCTTCGTCTTCTGCAAGTAGT 60
Query 61 CCTACTAGTAGAGTTCCATCTAGTCACTTTTTCTATGTAAGAAAACCCGGTTCTCTTCGA 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 CCTACTAGTAGAGTTCCATCTAGTCACTTTTTCTATGTAAGAAAACCTGGTTCTCTTCGA 120
Query 121 CAACCTATATCTTTTGAGGATTCTCCTGAGTGGGAAGACACACCTGATGTTGATTTAAGA 180
||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||
Sbjct 121 CAACCTATATCTTTTGAAGACTCTCCTGAATGGGAAGACACACCTGATGTTGATTTAAGA 180
Query 181 ATGGAAGATGAAGTTGGCGGTGGTGATTCTATTAATGATGCTACAACAACGCCTGTTTCT 240
||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 181 ATGGAAGATGAAGCTGGTGGTGGTGATTCTATTAATGACGCTACAACAACGCCTGTTTCT 240
Query 241 CCTTCGCTGTCGAAGATGAATAGCGGATCAATGGCTTCTCCTCCTGTGCCTGAAGGAGGA 300
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 241 CCTTCGTTGTCGAAGATGAATAGCGGATCAATGGCTTCTCCTCCTGTTCCTGAAGGAGGA 300
Query 301 GCT-GGAGCTGGTGTTGTTAGAAAGATTGCTGGTGCTTCTATTGCTTGGAAAGATTTGAC 359
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GCTGGGA-CTGGTGTTGTTAGAAAGATTGCTGGTGCTTCTATTGCTTGGAAAGATTTGAC 359
Query 360 TGTTACTATGAAAGGG-AAGAGAAAATATTCTGATAAGGTTGTAAAGAGTTCGAATGGTT 418
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TGTTACTATG-AAGGGAAAGAGAAAATATTCTGATAAGGTTGTAAAGAGTTCGAATGGTT 418
Query 419 ATGCGTTCCCCGGGACTATGACTGTAATTATGGGTCCTGCTAAATCCGGGAAGTCTACTC 478
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 419 ATGCGTTTCCCGGGACTATGACTGTAATTATGGGTCCTGCAAAATCCGGGAAGTCTACTC 478
Query 479 TCTTGAGGGCTCTTGCTGGAAGATTGCCTCCTTCAGCAAAAATGTATGGCGAGGTGTTTG 538
| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 479 TATTGAGGGCTCTTGCTGGAAGATTGCCTCCTTCAGCAAAAATGTACGGTGAGGTGTTTG 538
Query 539 TGAATGGTTCAAAATCACATATGCCTTATGGATCCTATGGATTTGTTGAAAGGGAAACAC 598
||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 539 TGAATGGCTCAAAGTCACATATGCCTTATGGATCCTATGGATTTGTTGAGAGGGAAACAC 598
Query 599 AATTGATTGGTTCACTTACAGTTCGTGAATTCCTGTACTATTCAGCACTGCTTCAGCTTC 658
|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 599 AATTGATTGGTTCACTTACAGTTCGTGAATTCTTGTACTATTCAGCGTTGCTTCAGCTTC 658
Query 659 CGGGTTTTCTCTTTCAGAAAAGGAGTGTTGTCGAAGATGCGATCCAGGCGATGTCTCTGA 718
||||||| ||||||||||||||||||||||| ||||||||||| ||||| ||||||||||
Sbjct 659 CGGGTTTCCTCTTTCAGAAAAGGAGTGTTGTTGAAGATGCGATACAGGCCATGTCTCTGA 718
Query 719 GTGATTATGCAAACAAATTGATTGGTGGTCATTGTTACATGAAGGGTC-TCAGCAGTGGT 777
|||||||||||||||||||||| ||||||||||||||||||||||||| || | ||||||
Sbjct 719 GTGATTATGCAAACAAATTGATCGGTGGTCATTGTTACATGAAGGGTCTTC-GAAGTGGT 777
Query 778 GAAAGAAGACGTGTCTCTATTGCTCGTGAACTTGTGATGCGACCACATATTTTATTCATC 837
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 778 GAAAGAAGACGTGTCTCTATTGCTCGTGAACTTGTGATGCGACCACATATCTTATTCATC 837
Query 838 GATGAGCCTCTTTATTACCTTGACAGTGTTTCGGCTCTGCTTATGATGGTGACACTAAAG 897
||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||
Sbjct 838 GATGAGCCTCTTTATCATCTTGACAGTGTTTCGGCACTGCTTATGATGGTGACACTAAAA 897
Query 898 AAGCTAGCAAGTATGGGTTGTACTCTTGTATTCACGATTTATCAAAGCAGTACCGAAGTT 957
||||| ||||||||||| ||||||||||||||||| ||||||||||| |||||||||||
Sbjct 898 AAGCTTGCAAGTATGGGATGTACTCTTGTATTCACCATTTATCAAAGTAGTACCGAAGTG 957
Query 958 TTTGGTTTGTTCGATAGAATCTGCCTTCTATCAAATGGAAACACGCTCTTCTTTGGGGAG 1017
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 958 TTTGGTTTGTTTGATAGAATCTGCCTTCTATCAAATGGAAACACACTCTTCTTTGGGGAG 1017
Query 1018 ACACTGGCATGCTTACAGCACTTTTCGAATGCTGGATTCCCTTGCCCGATAATGCAAAGT 1077
|||||||| ||||||||||| ||||| |||||||||||||| ||||||||||||||||||
Sbjct 1018 ACACTGGCTTGCTTACAGCATTTTTCAAATGCTGGATTCCCGTGCCCGATAATGCAAAGT 1077
Query 1078 CCATCAGATCATTTTTTGCGGGCTATAAACACAGATTTCGATAGGATTATTGCAATGTGC 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 CCATCAGATCATTTTTTGCGGGCTATAAACACAGATTTCGATAGGATTATTGCAATGTGC 1137
Query 1138 AAAAACTGGCAGGACGATAATGGGGACTTTTCAGCAGTGAATATGGATACTGCTGTTGCT 1197
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1138 AAAAACTGGCAGGACGATAATGGGGACTTTTCAGCAGTGAACATGGATACTGCTGTTGCT 1197
Query 1198 ATTCGCACTCTTGAGGCGACTTATAAATCATCTGCAGATGCTGATTCTGTCG-AGACTAT 1256
||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1198 ATTCGCACTCTCGAGGCGACTTATAAATCATCTGCAGATGCTGATTCTGTCGAAG-CTAT 1256
Query 1257 GATATTAAAACTTACCGAAAGGGAGGGCACACAGCTTAAATCCAAGGGTAAGGCCGGTGC 1316
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1257 GATAATAAAACTTACCGAAAGGGAGGGCACACAGCTTAAATCCAAGGGAAAGGCCGGTGC 1316
Query 1317 TGCTACACGTGTTGCAGTGCTCACTTGGAGATCACTTTTAGTTATGTCAAGAGAATGGAA 1376
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 1317 TGCTACACGTGTTGCAGTGCTCACATGGCGATCACTTTTAGTTATGTCAAGAGAATGGAA 1376
Query 1377 ATACTATTGGCTCCGACTTATCCTCTACATGATTCTTACACTTAGTATTGGCACATTATA 1436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 ATACTATTGGCTCCGACTTATCCTCTACATGATTCTTACACTTAGTATTGGCACATTATA 1436
Query 1437 TTCTGGCTTAGGTCACTCTTTGTCTTCTGTTGCAACAAGAGTTTCTGCGGTATTTGTTTT 1496
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1437 TTCTGGCTTAGGTCACTCTTTGTCTTCTGTTGCAACAAGAGTTGCTGCGGTATTTGTTTT 1496
Query 1497 TGTCTCGTTTGCTTCACTATTGGGGATTGCTGGAATACCTTCACTTTTAAAAGAAATCAA 1556
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1497 TGTCTCGTTTGCTTCACTGTTGGGGATTGCTGGAATACCTTCACTTTTAAAAGAAATCAA 1556
Query 1557 GATTTATAGAAGTGAAGCATCAAACCAGCATTCGGGTGCTTTTGTCTTCTTACTAGGGCA 1616
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1557 GATTTATAGAAGTGAAGCATCGAACCAGCATTCGGGCGCTTTTGTCTTCTTACTAGGGCA 1616
Query 1617 GTTTCTGGGAAGCATACCGTTCTTGTTTCTCATGTCCATTTCCTCAAGTCTTGTGTTCTA 1676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1617 GTTTCTGGGAAGCATACCGTTCTTGTTTCTCATGTCCATTTCCTCAAGTCTTGTGTTCTA 1676
Query 1677 CTTCATGGTCGGATTAAGAGACGATTTCAGCTTGTTAATGTACTTTGTGCTCAACTTCTT 1736
||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1677 CTTCATGGTTGGATTAAGAGATGATTTCAGCTTGTTGATGTACTTTGTGCTCAACTTCTT 1736
Query 1737 CATGTGCCTATTGGTAAACGAGGGATTGATGCTCTCCATTGCTTGCATTTGGCGAAATGT 1796
||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||| ||||
Sbjct 1737 CATGTGCCTATTGGTGAACGAAGGATTGATGCTCTTCATTGCTTGCATTTGGCGAGATGT 1796
Query 1797 TTACTGGAGCACTTTGACTCTCATCTCTGTACACGTGATCATGATGCTCGCAGCAGGTCA 1856
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1797 TTACTGGAGCACTTTGACTCTCATCTCTGTACATGTGATCATGATGCTCGCAGCAGGACA 1856
Query 1857 CTTCAGAATCCGTAACGCCTTGCCAAAACCCGTCTGGACTTACCCGTTTGCTTACATCTC 1916
|||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1857 CTTCAGAATCCGTACCGCCTTGCCCAAACCTGTCTGGACTTACCCGTTTGCTTACATCTC 1916
Query 1917 GTTCCACACCTACTCCATTGAGGGTCTTTTGGAGAACGAGTACCTCGGGGAAGTGTTTGC 1976
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1917 GTTCCACACCTACTCCATTGAGGGTCTTTTGGAGAACGAGTACCTCGGGGAAGTGTTTGC 1976
Query 1977 GGTTGGAGAAGTGAGGAGTATATCGGGATACCAAGCAATCCAAGGAAATTACCAGATATC 2036
||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1977 GGTCGGAGAAGTGAGGAGTATATCGGGTTACCAAGCAATCCAAGGAAATTACCAAATATC 2036
Query 2037 TCCAGACACAAACT-CCAAATGGAGGAACATGCTTGTGTTGTTGGCTATGGCTTTTGGCT 2095
|||||||||||| | |||||||||||||||||||||||||| | || |||||||||||||
Sbjct 2037 TCCAGACACAAA-TGCCAAATGGAGGAACATGCTTGTGTTGCTAGCGATGGCTTTTGGCT 2095
Query 2096 ACCGTCTTCTTGTTTATGTTTTACTACGTTTTGGCCTAAACAAGAATGTGTCTGGTCGTT 2155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2096 ACCGTCTTCTTGTTTATGTTTTACTACGTTTTGGCCTAAACAAGAATGTGTCTGGTCGTT 2155
Query 2156 TACTGCTTAGTCATAAGAAAAATAACAGTTCTAGGTAG 2193
|||||||||||||||||||||||||||| |||||||||
Sbjct 2156 TACTGCTTAGTCATAAGAAAAATAACAGCTCTAGGTAG 2193
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108784581015
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5