BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481705
Length=758
Score E
Sequences producing significant alignments: (Bits) Value
AT2G28060.1 | Symbols: | 5'-AMP-activated protein kinase beta-... 963 0.0
> AT2G28060.1 | Symbols: | 5'-AMP-activated protein kinase beta-2
subunit protein | chr2:11949986-11952204 REVERSE LENGTH=802
Length=802
Score = 963 bits (521), Expect = 0.0
Identities = 709/790 (90%), Gaps = 51/790 (6%)
Strand=Plus/Plus
Query 1 AGCCAATAAGCAAAACAAAAGCTGATGCTTGTCGCAACTGTGTTCGTCAAGAATCT-CAG 59
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 32 AGCCAATAAGCAAAACAAAAGCTGATGCTTGTCGCGACTGTGTTCGTCAAGAATCTCCAG 91
Query 60 CACGAACCCAA---------T-----CT-TCT---ATTAATCAATCAATC----A--T-- 93
|||||||||| | || ||| ||||||||||||||| | |
Sbjct 92 GACGAACCCAATCTTCTCTCTCGAAGCTGTCTAAAATTAATCAATCAATCATTGAGCTAA 151
Query 94 TC--ATTCTAGGTTAAGTTGTTTTGAGGATTTGTGTAGACTTTCATTGCTGCTACGTTTT 151
|| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 152 TCATATTCTAGGTT--TTTGTTTTAAGGATTTGTGTAGACTTTCATTGCTGCTACGTTTT 209
Query 152 TGAAAGGGTGATTTGAAGGGCTTAGCTTCACAAAATGGAATATGGTACTAAGGTTGCAAT 211
||||||||| ||||||||||||||||||| | || | || ||| |||| |||||
Sbjct 210 TGAAAGGGTAATTTGAAGGGCTTAGCTTC-C------CAA-A-GGCACT-AGGTGGCAAT 259
Query 212 CTTATCCAAGATGAATAGTCAAAATCCGGATGGTCATGAGGACACAACGGTTGTGGGATT 271
||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 260 CTTATCCAAGATGAACAGTCAAAATCCTGATGATCATGAGGACACAACGGTTGTGGGATT 319
Query 272 TGAAGTACCTGTATCGCCGGTTTCAAGTTACAACAATGTGTATTCCGCAACTGAAGATGA 331
||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 320 TGAAGTACCTGTATCACCGGTTTCAAGTTACAACAATGTGTATTCCTCAACCGAAGATGA 379
Query 332 GACAAGAGATCCTCCAGCAGTACCGCCACACCTTCAACACTCTCTATTAGGCAATCCGGG 391
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 380 GACAAGAGATCCTCCAGCAGTACCGCCACACCTTCAACACTCTCTATTAGGCAATCAGGG 439
Query 392 TAGCATGGAACTGGCTTATGCGCCACAGAATGTCGTCCTGAACCACCTCTATATCGAAAA 451
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 440 TAGCATGGAACTGGCTTATGCGCCACAGAATGTTGTCCTGAACCACCTCTATATCGAGAA 499
Query 452 CCGAGACGCCCCAAGATCTGTTGTAGCACTCGGTTTTTCGCATCGGTTCAG-ATCTAAGT 510
|||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||
Sbjct 500 CCGAGACGCCCCAAGATCTGTTGTAGCACTCGGTTTCTCGCATCGGTTCAGGA-CTAAGT 558
Query 511 TTGTCACAGTGGTGATATACAAGCCTGTCCAAAGAAGAGGGAACGCCAATGTTTAAATGA 570
||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||| |
Sbjct 559 TTGTCACTGTGGTGATATACAAGCCTGTCCAAAGAAGAGGGAGCGCCAATGTTTGAATAA 618
Query 571 TGATGCCTCTTTTTAAGTAGTGTTGGGAACTTGCTTCTTTATGGATTGAATTTGGTATAC 630
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 619 TGATACCTCTTTTTAAGTAGTGTTGGGAATTTGCTTCTTTATGGATTGAATTTGGTATAC 678
Query 631 AAAACCATCTACTCCAG-ACTGAATTTTCTTCTTCTCTTACCGATTCGATTTAGACGGTT 689
|||||||||| ||| | |||||||||| |||||||||||| ||||||||||||||||||
Sbjct 679 AAAACCATCTGGTCC-GTACTGAATTTTATTCTTCTCTTACAGATTCGATTTAGACGGTT 737
Query 690 TCTAGGTA-ATTCGATTGAAATCAAATCATCATCTTGTTCGAAGTTTATATAAAATCTAC 748
|||||||| ||||||||||||||| || | ||||||||| |||||||||||||||| |
Sbjct 738 TCTAGGTACATTCGATTGAAATCA--TC-T--TCTTGTTCGGAGTTTATATAAAATCTCC 792
Query 749 ATGCATTTTT 758
||||||||||
Sbjct 793 ATGCATTTTT 802
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36821629751
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5