BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481708
Length=2019
Score E
Sequences producing significant alignments: (Bits) Value
AT2G28000.1 | Symbols: CPN60A, CH-CPN60A, SLP | chaperonin-60al... 3267 0.0
> AT2G28000.1 | Symbols: CPN60A, CH-CPN60A, SLP | chaperonin-60alpha
| chr2:11926449-11929389 FORWARD LENGTH=2120
Length=2120
Score = 3267 bits (1769), Expect = 0.0
Identities = 1951/2036 (96%), Gaps = 24/2036 (1%)
Strand=Plus/Plus
Query 1 AAAGAATCTTCTGGATCC--TTTCT-TCAGCTA----CTCCATTTATC---TAAACCCTA 50
|||||||||||||||||| ||||| ||||||| ||||||||||| |||||||||
Sbjct 1 AAAGAATCTTCTGGATCCTTTTTCTCTCAGCTACTCTCTCCATTTATCTAATAAACCCTA 60
Query 51 A-CCCT-CT----CACTATTCGTTTTCACTAACCACTTCCTTATCCACACCAATCGAGAA 104
| |||| || |||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 61 ACCCCTCCTCCCACACTATTCGTTTACACTAACCACTTCCTTATCCACACCAATCCAGAA 120
Query 105 CATTCCTCAAAAAGCTCGCTGCTTTTCTCTCAAAATGGCGTCCGCAAACGCTCTCTCTTC 164
| ||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||
Sbjct 121 CGTTCCTCAAAAAGCTCCCTCCTTTTCTCTCAAAATGGCGTCTGCAAACGCTCTCTCTTC 180
Query 165 CGCCTCCGTCCTCTGCTCTTCCCGTCAGAGTAAGTTGGGAGGAGGAAATCAGCAGCAAGG 224
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CGCCTCCGTCCTCTGTTCTTCCCGTCAGAGTAAGTTGGGAGGAGGAAATCAGCAGCAAGG 240
Query 225 TCAGAGAGTTAGCTACAACAAGAGGACAAACAGACGTTTTAGCGTTAGAGCAAATGTAAA 284
||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||
Sbjct 241 TCAGAGAGTTAGCTACAACAAGAGGACAATCAGACGTTTTAGTGTTAGAGCTAATGTAAA 300
Query 285 GGAAATAGCTTTTGACCAGCACTCTAGAGCTGCTCTTCAAGCTGGTATTGATAAGCTTGC 344
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 301 GGAAATAGCTTTTGACCAGCACTCTAGAGCTGCTCTACAAGCTGGTATTGATAAGCTTGC 360
Query 345 TGATTGTGTTGGTCTCACTCTTGGTCCTAGAGGGAGGAATGTTGTGTTGGATGAATTTGG 404
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 361 TGATTGTGTTGGTCTCACTCTTGGCCCTAGAGGGAGGAATGTTGTGTTGGATGAATTTGG 420
Query 405 AAGTCCTAAGGTGGTGAATGATGGTGTCACCATTGCTAGGGCTATTGAGTTACCTAATGC 464
|||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 421 AAGTCCTAAGGTTGTGAATGATGGAGTCACCATTGCTAGAGCTATTGAGTTACCTAATGC 480
Query 465 CATGGAAAATGCTGGTGCTGCGCTTATTCGTGAGGTTGCGAGTAAGACTAATGACTCGGC 524
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 481 CATGGAAAATGCTGGTGCAGCGCTTATTCGTGAGGTTGCGAGTAAGACTAATGACTCTGC 540
Query 525 TGGTGATGGGACAACCACTGCGTCTATCCTTGCTCGGGAGATAATCAAACATGGATTGTT 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TGGTGATGGGACAACCACTGCGTCTATCCTTGCTCGGGAGATAATCAAACATGGATTGTT 600
Query 585 GAGTGTCACTTCTGGTGCAAATCCCGTTTCTCTCAAGAGGGGAATTGATAAGACCGTGCA 644
||| |||||||||||||| ||||||||||| ||||||||||||||||||||||| || ||
Sbjct 601 GAGCGTCACTTCTGGTGCGAATCCCGTTTCACTCAAGAGGGGAATTGATAAGACTGTTCA 660
Query 645 AGGTCTGATTGAAGAGCTTCAGAAGAAAGCTAGGCCTGTGAAAGGTCGTGATGACATCAG 704
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 661 AGGTCTGATCGAAGAGCTTCAGAAGAAAGCTAGGCCCGTGAAAGGTCGTGATGACATCAG 720
Query 705 AGCTGTGGCTTCTATCTCTGCTGGAAATGATGACCTTATAGGGTCAATGATTGCTGATGC 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 AGCTGTGGCTTCTATCTCTGCTGGAAATGATGACCTTATAGGGTCAATGATTGCTGATGC 780
Query 765 CATTGACAAAGTTGGACCTGATGGTGTTTTGTCCATTGAATCTTCGTCCTCTTTTGAGAC 824
||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 781 CATCGACAAAGTTGGACCTGATGGTGTTTTGTCCATTGAATCTTCATCTTCTTTTGAGAC 840
Query 825 CACGGTCGAAGTTGAAGAAGGGATGGAGATTGACAGAGGTTACATCTCGCCTCAGTTTGT 884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CACGGTCGAAGTTGAAGAAGGGATGGAGATTGACAGAGGTTACATCTCGCCTCAGTTTGT 900
Query 885 TACAAACCCTGAGAAACTACTAGCTGAGTTTGAGAATGCTAGGGTTTTGATCACTGATCA 944
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 901 TACAAACCCTGAGAAACTACTAGCTGAGTTTGAGAATGCTAGGGTATTGATCACTGATCA 960
Query 945 GAAGATCACTGCAATCAAAGACATCATTCCTATTTTGGAGAAGACCACTCAGCTTCGTGC 1004
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 961 GAAGATCACTGCGATCAAAGACATCATCCCTATTTTGGAGAAGACCACTCAGCTTCGTGC 1020
Query 1005 TCCGTTGTTGATTATTGCAGAGGATGTTACTGGTGAAGCCTTAGCTACCCTTGTCGTGAA 1064
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 TCCGTTGTTGATTATTGCAGAGGATGTTACTGGTGAAGCCTTAGCTACCCTTGTCGTGAA 1080
Query 1065 CAAGCTCCGTGGTGTCCTCAATGTCGTTGCAGTTAAAGCTCCAGGATTTGGAGAAAGAAG 1124
|||||| ||||||||||||||||| ||||| |||||||| ||||||||||||||||||||
Sbjct 1081 CAAGCTTCGTGGTGTCCTCAATGTTGTTGCCGTTAAAGCGCCAGGATTTGGAGAAAGAAG 1140
Query 1125 AAAAGCCATGCTTCAAGATATTGCAATCTTGACAGGAGCTGAGTACCTAGCCATGGACAT 1184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 AAAAGCCATGCTTCAAGATATTGCAATCTTGACAGGAGCTGAGTACCTAGCCATGGACAT 1200
Query 1185 GAGCTTGCTGGTTGAAAACGCAACCATAGATCAATTGGGTATTGCCCGAAAAGTCACGAT 1244
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 GAGCTTACTGGTTGAAAACGCAACCATAGATCAATTGGGTATTGCCCGAAAAGTCACGAT 1260
Query 1245 TAGCAAAGATTCGACTACCCTTATTGCAGATGCAGCTTCCAAGGACGAATTACAAGCTCG 1304
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1261 TAGCAAAGATTCGACTACCCTCATTGCAGATGCAGCTTCCAAGGACGAATTACAAGCTCG 1320
Query 1305 GATTGCTCAGCTAAAGAAAGAACTATTCGAGACTGATTCTGTGTATGACTCTGAGAAGCT 1364
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1321 GATTGCTCAGCTGAAGAAAGAACTATTCGAGACTGATTCTGTGTATGACTCAGAGAAGCT 1380
Query 1365 TGCTGAGAGAATCGCTAAGCTATCTGGAGGTGTTGCTGTCATTAAAGTCGGAGCAGCAAC 1424
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 CGCTGAGAGAATTGCGAAGCTATCTGGAGGTGTTGCTGTCATTAAAGTCGGAGCAGCAAC 1440
Query 1425 TGAAACGGAGCTTGAGGACCGTAAGCTCCGTATCGAGGATGCAAAGAATGCAACATTTGC 1484
|||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1441 TGAAACTGAGCTTGAGGACCGTAAGCTTCGTATCGAGGATGCAAAGAACGCAACATTTGC 1500
Query 1485 TGCTATCGAGGAAGGCATAGTTCCAGGTGGTGGTGCTGCTTTGGTGCATCTCTCCACTGT 1544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1501 TGCTATCGAGGAAGGCATAGTTCCAGGTGGTGGTGCTGCTTTGGTGCATCTCTCCACTGT 1560
Query 1545 TATTCCCGCCATCAAGGAGACGTTCGAGGATGCTGATGAACGTTTGGGAGCTGATATAGT 1604
|||||||||||| |||||||| || ||||||||||||||||||||||||||||| |||||
Sbjct 1561 TATTCCCGCCATTAAGGAGACTTTTGAGGATGCTGATGAACGTTTGGGAGCTGACATAGT 1620
Query 1605 ACAAAAGGCATTGCTGTCACCAGCTGCACTTATTGCCCAGAACGCTGGAGTTGAAGGAGA 1664
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1621 ACAAAAGGCATTGCTGTCACCAGCTGCTCTTATTGCTCAGAACGCTGGAGTTGAAGGAGA 1680
Query 1665 AGTTGTTGTGGAAAAGATTATGTTCAGCGAATGGGAGCAA-GGGTACAACGCGATGACTG 1723
|||||||||||||||||||||||||||||| |||||| || ||||||||||| |||||||
Sbjct 1681 AGTTGTTGTGGAAAAGATTATGTTCAGCGATTGGGAG-AATGGGTACAACGCAATGACTG 1739
Query 1724 ATACGTATGAGAATCTGTTTGAAGCTGGAGTGATTGATCCCGCAAAAGTGACGAGATGTG 1783
|||| |||||||||||||| |||||||||||||||||||| || |||||||| |||||||
Sbjct 1740 ATACATATGAGAATCTGTTCGAAGCTGGAGTGATTGATCCGGCTAAAGTGACAAGATGTG 1799
Query 1784 CGCTACAGAACGCTGCTTCCGTTGCAGGAATGGTACTGACCACTCAGGCCATTGTTGTCG 1843
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1800 CGCTACAGAACGCTGCTTCCGTAGCAGGAATGGTACTGACCACTCAGGCCATTGTTGTTG 1859
Query 1844 ACAAACCGAAACCCAAGGCTCctgctgctgctgctgctCCTGAGGGTCTCATGGTGTAAT 1903
||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||
Sbjct 1860 ACAAACCGAAACCCAAGGCTCCTGCTGCTGCTGCT-C-C-TGAGGGTCTCATGGTGTAAT 1916
Query 1904 CAAAACACAACATCTTATCATCACAATGGCATAttttgtctttttgcacatttgttatcc 1963
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||
Sbjct 1917 CAAAACACAACATCTTATCATCACAATGGCATCTTT-GTCTTTTTGCACATTTGTCATCC 1975
Query 1964 cccattttatctgcaatgtttttcttttttgGGGGAATATGAGTAGTTTGTTAACA 2019
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1976 CC-ATTT-ATCTGCAATGTTTTTCTTTTTTGGGGGAATATGAGTAGTTTGTTAACA 2029
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100049686185
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5