BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg481709
Length=1992
Score E
Sequences producing significant alignments: (Bits) Value
AT2G27990.1 | Symbols: BLH8, PNF | BEL1-like homeodomain 8 | ch... 2499 0.0
> AT2G27990.1 | Symbols: BLH8, PNF | BEL1-like homeodomain 8 |
chr2:11921433-11924698 REVERSE LENGTH=1990
Length=1990
Score = 2499 bits (1353), Expect = 0.0
Identities = 1812/2017 (90%), Gaps = 98/2017 (5%)
Strand=Plus/Plus
Query 1 tctctctctctctcCCACGGTCGGTTTACATACATATCTAAA--C-CCACCGGAGCTCCG 57
||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 21 TCTCTCTCTATCTCCCACGGTCGGTTTACATACATATCTAAACTCACCACCGGAGCTCCG 80
Query 58 ACGAGTTTCCCGGCCACTTTTCGATCGAATATC-GAAGGTACA-AAGAGATGGATATGAT 115
|||| ||| |||||||| || |||||||||||| |||||||| || |||||||||||||
Sbjct 81 ACGATTTTTCCGGCCACCTTCCGATCGAATATCAAAAGGTACATAA-AGATGGATATGAT 139
Query 116 AAAACCAGAGTTGCATGTAGTTCAACAAATCCAAAGAGATAAGTTTAGAGTTGAGCAACT 175
|||||| | | || | |||||||||||| ||||||||||||||||||||||||| |
Sbjct 140 AAAACC--A---G-AT-T--TTCAACAAATCCGAAGAGATAAGTTTAGAGTTGAGCAAAT 190
Query 176 GAATGATTTTCCCAACACTTGGAatcatcatcatcagcagcagcagcagcatcagaacat 235
|||||||||||||||||||||| | | | ||||||||||||||||||||
Sbjct 191 GAATGATTTTCCCAACACTTGG-------A-C-T------CAGCAGCAGCATCAGAACAT 235
Query 236 cagAATTCCCAACAACCTTGATTTGATTGGTATTTTGCAGAACCAGATTTCTGTACCGGT 295
||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||
Sbjct 236 CAGAATTCCCAACAACCTTGATTTGATTGGTATCTTACAGAACCAGATTTCCGTACCGGT 295
Query 296 TCAGACCGATTTGTATCAAGATTCTACCGCAACCTTTATGAACATGCCTCAGTCGATACA 355
||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 296 TCAAACCGATTTGTATCAAGATTCTGCCGCAACCTTTATGAACATGCCTCAGTCGATACA 355
Query 356 TAGAGACCCACAAGGCTCTAGTAATTGGAGAACT-AGTGATTTGTCACAACAGAGTACCG 414
|||||||||||||||| ||||||||||||||| | |||||||||||||||| |||||||
Sbjct 356 TAGAGACCCACAAGGCCCTAGTAATTGGAGAA-TCAGTGATTTGTCACAACCTAGTACCG 414
Query 415 TGAATTGTTCGGTGGTGAATTACGGGTATGATGAGGCTGGTATTAGGCCAAGCAACGTTG 474
|||| || |||| |||||| |||||||||||||||||| ||||||||
Sbjct 415 TGAA----TC-----------ACGGATATGATCAGGCTGGTATTAGGCCAAACAACGTTG 459
Query 475 GAGATTTGTTCTCAAATCATTTCAATTCTCGGAACCAAATATTGGACCGTCCTCTTTATG 534
||||||||| || ||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 460 CAGATTTGTTGTCCGATCATTTCAGTTCTCGAAACCAAATATTGGACCGTCCTCTTTATG 519
Query 535 TTGGCCGGGAAAT-TATTGCTCAGTCTAGCATGACAAGGAGAAGTGAAGTTTCTTGTCTA 593
| ||||||| | | |||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 520 TCGGCCGGG-ACTCTATTCCTCAGTCTAGCATGATTAGGAGAAGTGAAGTTTCTTGTCTA 578
Query 594 GATGATAACCAGAAGGGTTGTGTAACGGTGGCTTGTTCGGGTACTGGTAATGAGATTCTA 653
|| ||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 579 GACGATAATCAAAAGGGTTGTGTAACGGTGGCTTGTTCGGGTACTGGTAATGAGATTTTA 638
Query 654 AAGAGCAGTTATGATCAAGGTTCTTCTTCTGGAAGTTACCGAGGAGAACTTGAGTTTCTC 713
| |||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 639 AGGAGCAGTTATGATCAAGGTTCTTCTTCTGGAAGTTACCGAGGAGAATTTTCGTTTCTC 698
Query 714 CCACGTTTGGAGAATCAATTAGTTGCGCACAATGCAAGCCAGTGGAACCAC-GAACAGCT 772
||| ||||||||||||||| ||||||||||||||||||| | ||||||||| || ||| |
Sbjct 699 CCAAGTTTGGAGAATCAATCAGTTGCGCACAATGCAAGCAACTGGAACCACGGACCAG-T 757
Query 773 GAATTTTACTGCCACTTCTCATACTAATAG---GAAAGGCTTTCCACTCTCACTTTTTTC 829
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 758 GAATGTTACTGCCACTTCTCATACTAATAGTAAGAAAGGCTTTCCACTCTCACTTTTGTC 817
Query 830 TGGA-ATACCTTCATCTAGAGACGTTGGAAATGCCGCTGTTTCGTCTACGATGAATATCC 888
| || || ||| |||||||||||||||||||||| ||||||| ||| || ||||||||
Sbjct 818 T-GATATCCCTCCATCTAGAGACGTTGGAAATGCAGCTGTTTTGTCAACAATGAATAT-- 874
Query 889 ACGGACATTTGGGCCCGCTCGGGCCTTTTACGGGATATGCATCGATACTGAAGAGCTCGA 948
| || ||||| ||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 875 TC--AC-----GGCCCACTCGGGCCTTTCACGGGATATGCATCGATACTGAAGAGTTCGA 927
Query 949 GGTTCTTAGAGCCGGCTCA-ACAAATGTTAGAAGAGTTCTGTATCTCTTATGCATCAAAG 1007
||||||| ||||||||||| | |||||||||||||||| |||||||||||||| ||||||
Sbjct 928 GGTTCTTGGAGCCGGCTCAGA-AAATGTTAGAAGAGTTTTGTATCTCTTATGCTTCAAAG 986
Query 1008 ATTATTAGTAGAAGCGAATCTACTTCCATGgatgatgatgatgatgatgatgatgatAAC 1067
|||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 987 ATTATTAGTAGAAGTGAATCTACTTCCATGGA-G--GATGATGATGATGATGATGATAAC 1043
Query 1068 TCGTCAGTGTTTAGTAGTTCTTATGAGCCAGTAGAGCCCAAGAATAGACTAAAGAGGGCA 1127
| ||||| |||||||||||||| ||||||| |||| ||||||||||||||||||| |||
Sbjct 1044 TTGTCAGGGTTTAGTAGTTCTTCTGAGCCATTAGAACCCAAGAATAGACTAAAGAAAGCA 1103
Query 1128 AAACTTCTTTTTCTACAAGAAGAGGTTTGCAAGTGGTACAAATTATACAATCACCATTTG 1187
|||||||| ||||| ||||||||||||||||||||||||||| |||| ||||| || |||
Sbjct 1104 AAACTTCTCTTTCTGCAAGAAGAGGTTTGCAAGTGGTACAAACTATATAATCATCAGTTG 1163
Query 1188 CAAACAGTTATGTCTTCCTTCAATACAGTGGCTGGTCTAAGA-ACCGCAACACCGTATAT 1246
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 1164 CAAACAGTTATGTCTTCCTTCAATACAGTGGCTGGTCTAA-ACACCGCAACACCGTATAT 1222
Query 1247 CTCGTTGGCTCTCAAACGGACTTCGA-GAAGTTTTAAGGCCCTTAGAACCGCAATATCTG 1305
|||||||||||||||||||||||| | ||||||| ||||||||||||||||||||| |||
Sbjct 1223 CTCGTTGGCTCTCAAACGGACTTC-ACGAAGTTTCAAGGCCCTTAGAACCGCAATAGCTG 1281
Query 1306 AACATGTGAAGCAAATCTCAAGTCACCT-ATCAAGCGGT---GACAAC-ACCGTATTCCA 1360
||||||||||||||||||||||||| || ||||| |||| ||||| |||| ||||||
Sbjct 1282 AACATGTGAAGCAAATCTCAAGTCA-CTCATCAAACGGTAACAACAACAACCG-ATTCCA 1339
Query 1361 AAAGAAACAAAGATCTTTGATTGGTCACAATGTCGGGTTTGAATCTCAACAACAACATAT 1420
||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1340 AAAGAGGCAAAGATCTTTGATTGGTAACAATGTCGGGTTTGAATCTCAACAACAACATAT 1399
Query 1421 GTGGAGGCCTCAAAGGGGATTGCCCGAACCCGCGGTGGCTGTTCTCCGAGCATGGCTCTT 1480
|||||||||||||||||||||||||||| || ||||||||||| |||||||||||||
Sbjct 1400 CTGGAGGCCTCAAAGGGGATTGCCCGAACGTGCAGTGGCTGTTCTTAGAGCATGGCTCTT 1459
Query 1481 TGACCATTTTCTTCATCCGTACCCCACTGATTCTGATAAGCAGATGCTAGCCACTCAAAC 1540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1460 TGACCATTTTCTTCATCCGTACCCCACTGATTCTGATAAGCAGATGCTAGCCACTCAAAC 1519
Query 1541 CGGTCTCTCTCGTAACCAGGTATCAAATTGGTTCATAAACGCCCGTGTTCGATTATGGAA 1600
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1520 TGGTCTCTCTCGTAACCAGGTATCAAATTGGTTCATAAACGCCCGTGTGCGATTATGGAA 1579
Query 1601 ACCAATGGTGGAAGAAATACACACACTTGAGACCAAAGCCATTAAAAATCCAGATACTAG 1660
||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 1580 ACCTATGGTGGAAGAAATACACACACTTGAGACCAAAGCAATTAAAAATGCAGATACTAG 1639
Query 1661 TCACAACATGGAGCCATCAAATAGACCGAATACTGTTAGTAGTACTCCGAGCCATGAACA 1720
||||||||| ||||||||||||||||||||||||||||| ||| | | ||||||||||||
Sbjct 1640 TCACAACATTGAGCCATCAAATAGACCGAATACTGTTAGCAGT-C-C-GAGCCATGAACA 1696
Query 1721 AACGTTAACGGACCTCTCTGGGACAAAACGGTCGAGGTTAGAGTACATGGACATGATGGG 1780
|||| |||||| |||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 1697 AACGCTAACGGGCCTCTCCGGGACAAAACGGTCGAGGTTAGAGTACATGGACATGGTGGG 1756
Query 1781 GTTCAATAGAGGGAACGTGTCACTCACTTTAGAGCTTAGGCGTGGTGTGGACAATGTAAT 1840
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1757 GTTCAATAGAGGGAACGTGTCACTCACGTTAGAGCTTAGGCGTGGTGTGGACAATGTTAT 1816
Query 1841 CCAAACGCAGACGCAGACACAGGATCATCAGTTTGGAACTGGA-GACCATATGTTTCATG 1899
|||||||||||| ||| | |||||||||||||||||||| | ||| ||||||||||
Sbjct 1817 CCAAACGCAGACTCAG-----G-ATCATCAGTTTGGAACTGGAAG-CCAAATGTTTCATG 1869
Query 1900 ACTTTGTGGGTTGAAAC-CCGTTTGCTTTTGTTTCAC-TTAAATGTATTTTGGGTACAGT 1957
|||||||||||||||| || | |||||||||||||| || | ||||||||||||| |||
Sbjct 1870 ACTTTGTGGGTTGAAAATCC-TCTGCTTTTGTTTCACCTTTA-TGTATTTTGGGTAGAGT 1927
Query 1958 GAAAG-A-CAAAGTTGTCTTGAATTGGTTACTCTTAA 1992
|||| | ||||||||||||||| ||||||||| |||
Sbjct 1928 GAAAATAACAAAGTTGTCTTGAAATGGTTACTCCTAA 1964
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98694271470
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5